cyanobase » Calothrix sp. PCC 7103

Calothrix sp. PCC 7103

Summary

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Data source name GCA_000331305.1
Full name Calothrix sp. PCC 7103 External
Taxonomy Lineage Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.

Genome Information

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Chromosomes
Name Size (bp) Genes
KB217478 8,793,494 0
KB217483 1,563,682 0
KB217480 392,323 0
KB217481 321,658 0
KB217482 209,850 0
KB217472 102,424 0
KB217473 88,063 0
KB217479 45,255 0
KB217474 30,445 0
KB217476 22,361 0
KB217475 12,707 0
KB217477 2,131 0
Total 11,584,393 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000331305.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000331305.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000331305.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000331305.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000331305.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000331305.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000331305.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000331305.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000331305.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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