cyanobase » Microcoleus sp. PCC 7113

Microcoleus sp. PCC 7113

Summary

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Data source name GCA_000317515.1
Full name Microcoleus sp. PCC 7113 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.

Genome Information

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Chromosomes
Name Size (bp) Genes
Chromosome 7,470,429 6,112
pMIC7113.01 146,045 105
pMIC7113.02 93,032 70
pMIC7113.03 92,471 76
pMIC7113.04 50,464 48
pMIC7113.05 38,468 39
pMIC7113.06 28,816 32
pMIC7113.07 25,982 18
pMIC7113.08 20,803 29
Total 7,966,510 6,529
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000317515.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000317515.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000317515.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000317515.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000317515.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000317515.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000317515.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000317515.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000317515.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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