cyanobase » Microcoleus sp. PCC 7113

Microcoleus sp. PCC 7113

Summary

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Data source name GCA_000317515.1
Full name Microcoleus sp. PCC 7113
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.

Genome Information

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Chromosomes
Name Size (bp) Genes
Chromosome 7,470,429 6,112
pMIC7113.01 146,045 105
pMIC7113.02 93,032 70
pMIC7113.03 92,471 76
pMIC7113.04 50,464 48
pMIC7113.05 38,468 39
pMIC7113.06 28,816 32
pMIC7113.07 25,982 18
pMIC7113.08 20,803 29
Total 7,966,510 6,529
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000317515.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000317515.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000317515.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000317515.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000317515.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000317515.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000317515.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000317515.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000317515.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000317515.1/genes/interpro.txt (File format)

MicrobeBase