cyanobase » Chlorogloeopsis fritschii PCC 6912

Chlorogloeopsis fritschii PCC 6912

Summary

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Data source name GCA_000317285.1
Full name Chlorogloeopsis fritschii PCC 6912 External
Taxonomy Lineage Cyanobacteria; Stigonematales; Chlorogloeopsis.

Genome Information

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Chromosomes
Name Size (bp) Genes
AJLN01000116 778,383 0
AJLN01000100 336,181 0
AJLN01000084 197,183 0
AJLN01000050 195,638 0
AJLN01000037 195,373 0
AJLN01000047 194,853 0
AJLN01000051 182,448 0
AJLN01000085 179,595 0
AJLN01000061 166,255 0
AJLN01000134 165,886 0
AJLN01000063 154,844 0
AJLN01000145 152,079 0
AJLN01000068 151,811 0
AJLN01000040 146,330 0
AJLN01000104 142,863 0
AJLN01000015 140,421 0
AJLN01000153 138,993 0
AJLN01000045 126,705 0
AJLN01000107 124,635 0
AJLN01000149 123,903 0
AJLN01000098 122,369 0
AJLN01000141 121,431 0
AJLN01000081 118,406 0
AJLN01000152 116,510 0
AJLN01000049 98,820 0
AJLN01000078 98,525 0
AJLN01000033 97,542 0
AJLN01000120 96,787 0
AJLN01000066 95,607 0
AJLN01000097 88,992 0
AJLN01000143 84,181 0
AJLN01000074 80,264 0
AJLN01000094 75,845 0
AJLN01000123 74,015 0
AJLN01000017 72,674 0
AJLN01000067 69,794 0
AJLN01000093 66,961 0
AJLN01000062 63,665 0
AJLN01000140 62,172 0
AJLN01000117 62,146 0
AJLN01000108 60,879 0
AJLN01000044 59,865 0
AJLN01000101 57,855 0
AJLN01000109 55,770 0
AJLN01000065 54,123 0
AJLN01000125 53,420 0
AJLN01000083 52,362 0
AJLN01000071 48,832 0
AJLN01000161 44,869 0
AJLN01000039 44,535 0
AJLN01000077 43,695 0
AJLN01000102 42,920 0
AJLN01000113 41,998 0
AJLN01000016 41,144 0
AJLN01000079 39,410 0
AJLN01000137 39,259 0
AJLN01000042 38,487 0
AJLN01000119 38,219 0
AJLN01000146 36,462 0
AJLN01000124 35,962 0
AJLN01000135 35,585 0
AJLN01000035 35,020 0
AJLN01000088 33,878 0
AJLN01000055 33,715 0
AJLN01000048 33,530 0
AJLN01000060 32,597 0
AJLN01000056 31,480 0
AJLN01000070 31,381 0
AJLN01000087 31,043 0
AJLN01000075 30,972 0
AJLN01000046 30,057 0
AJLN01000136 29,760 0
AJLN01000069 29,414 0
AJLN01000112 29,170 0
AJLN01000059 29,143 0
AJLN01000058 28,710 0
AJLN01000148 28,590 0
AJLN01000110 28,330 0
AJLN01000036 27,637 0
AJLN01000096 27,003 0
AJLN01000122 26,851 0
AJLN01000080 26,047 0
AJLN01000154 26,011 0
AJLN01000034 25,949 0
AJLN01000142 25,706 0
AJLN01000076 24,343 0
AJLN01000111 22,854 0
AJLN01000121 20,341 0
AJLN01000014 18,748 0
AJLN01000082 17,847 0
AJLN01000105 13,669 0
AJLN01000041 13,230 0
AJLN01000106 13,121 0
AJLN01000138 10,494 0
AJLN01000095 10,266 0
AJLN01000132 9,693 0
AJLN01000072 8,508 0
AJLN01000073 8,333 0
AJLN01000118 7,140 0
AJLN01000054 7,073 0
AJLN01000052 6,996 0
AJLN01000151 6,981 0
AJLN01000150 6,677 0
AJLN01000043 6,495 0
AJLN01000086 5,911 0
AJLN01000114 4,713 0
AJLN01000115 4,623 0
AJLN01000099 3,545 0
AJLN01000131 3,501 0
AJLN01000021 3,346 0
AJLN01000147 2,998 0
AJLN01000133 2,963 0
AJLN01000139 2,336 0
AJLN01000103 2,298 0
AJLN01000064 2,226 0
AJLN01000156 2,197 0
AJLN01000038 2,089 0
AJLN01000025 1,854 0
AJLN01000053 1,761 0
AJLN01000026 1,727 0
AJLN01000020 1,569 0
AJLN01000006 1,560 0
AJLN01000027 1,483 0
AJLN01000158 1,455 0
AJLN01000005 1,442 0
AJLN01000029 1,441 0
AJLN01000004 1,408 0
AJLN01000090 1,385 0
AJLN01000013 1,331 0
AJLN01000001 1,206 0
AJLN01000092 1,196 0
AJLN01000031 1,161 0
AJLN01000157 1,076 0
AJLN01000057 1,069 0
AJLN01000129 1,027 0
AJLN01000028 918 0
AJLN01000032 912 0
AJLN01000009 907 0
AJLN01000002 859 0
AJLN01000008 781 0
AJLN01000155 745 0
AJLN01000003 579 0
AJLN01000010 521 0
AJLN01000011 503 0
AJLN01000126 443 0
AJLN01000089 430 0
AJLN01000019 425 0
AJLN01000091 398 0
AJLN01000159 382 0
AJLN01000024 346 0
AJLN01000144 342 0
AJLN01000022 324 0
AJLN01000007 310 0
AJLN01000018 305 0
AJLN01000012 302 0
AJLN01000030 299 0
AJLN01000128 286 0
AJLN01000160 280 0
AJLN01000127 264 0
AJLN01000023 234 0
AJLN01000130 214 0
Total 7,751,745 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000317285.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000317285.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000317285.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000317285.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000317285.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000317285.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000317285.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000317285.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000317285.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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