cyanobase » Chlorogloeopsis fritschii PCC 9212

Chlorogloeopsis fritschii PCC 9212

Summary

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Data source name GCA_000317265.1
Full name Chlorogloeopsis fritschii PCC 9212 External
Taxonomy Lineage Cyanobacteria; Stigonematales; Chlorogloeopsis.

Genome Information

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Chromosomes
Name Size (bp) Genes
AJLM01000039 499,684 0
AJLM01000012 339,561 0
AJLM01000058 336,074 0
AJLM01000040 278,803 0
AJLM01000026 233,606 0
AJLM01000177 221,618 0
AJLM01000110 215,126 0
AJLM01000030 195,630 0
AJLM01000028 190,802 0
AJLM01000151 166,126 0
AJLM01000025 160,061 0
AJLM01000100 151,968 0
AJLM01000055 145,168 0
AJLM01000187 137,262 0
AJLM01000060 122,488 0
AJLM01000104 121,353 0
AJLM01000157 120,855 0
AJLM01000015 118,406 0
AJLM01000107 117,952 0
AJLM01000118 117,515 0
AJLM01000061 115,991 0
AJLM01000097 111,230 0
AJLM01000175 98,539 0
AJLM01000017 97,528 0
AJLM01000165 96,787 0
AJLM01000178 95,494 0
AJLM01000020 94,794 0
AJLM01000051 92,828 0
AJLM01000050 92,809 0
AJLM01000112 85,506 0
AJLM01000008 84,162 0
AJLM01000021 82,898 0
AJLM01000109 82,380 0
AJLM01000063 75,844 0
AJLM01000088 72,675 0
AJLM01000119 62,301 0
AJLM01000156 62,172 0
AJLM01000038 62,147 0
AJLM01000057 57,852 0
AJLM01000179 57,255 0
AJLM01000049 55,762 0
AJLM01000186 53,588 0
AJLM01000013 52,365 0
AJLM01000032 51,444 0
AJLM01000048 51,196 0
AJLM01000125 49,874 0
AJLM01000154 49,736 0
AJLM01000095 48,827 0
AJLM01000031 47,356 0
AJLM01000022 45,021 0
AJLM01000024 44,535 0
AJLM01000099 43,696 0
AJLM01000056 42,955 0
AJLM01000043 41,993 0
AJLM01000176 39,410 0
AJLM01000087 38,632 0
AJLM01000166 38,213 0
AJLM01000011 36,959 0
AJLM01000101 36,567 0
AJLM01000152 35,727 0
AJLM01000064 35,037 0
AJLM01000019 35,020 0
AJLM01000033 33,955 0
AJLM01000163 33,875 0
AJLM01000114 33,715 0
AJLM01000113 32,041 0
AJLM01000102 31,828 0
AJLM01000065 31,797 0
AJLM01000094 31,359 0
AJLM01000162 31,077 0
AJLM01000027 30,055 0
AJLM01000153 29,761 0
AJLM01000093 29,334 0
AJLM01000047 29,133 0
AJLM01000089 27,353 0
AJLM01000090 26,093 0
AJLM01000018 25,886 0
AJLM01000016 25,784 0
AJLM01000158 25,699 0
AJLM01000098 24,343 0
AJLM01000121 21,367 0
AJLM01000132 21,194 0
AJLM01000188 20,332 0
AJLM01000138 20,237 0
AJLM01000130 20,182 0
AJLM01000133 18,172 0
AJLM01000014 17,846 0
AJLM01000131 17,461 0
AJLM01000126 17,201 0
AJLM01000096 17,011 0
AJLM01000123 15,580 0
AJLM01000136 14,722 0
AJLM01000137 14,521 0
AJLM01000053 13,668 0
AJLM01000052 13,091 0
AJLM01000150 13,047 0
AJLM01000062 10,481 0
AJLM01000122 10,081 0
AJLM01000037 7,020 0
AJLM01000106 6,923 0
AJLM01000115 6,686 0
AJLM01000105 6,673 0
AJLM01000117 6,610 0
AJLM01000161 6,471 0
AJLM01000135 6,334 0
AJLM01000067 5,594 0
AJLM01000140 5,521 0
AJLM01000139 5,254 0
AJLM01000042 4,715 0
AJLM01000041 4,610 0
AJLM01000075 4,186 0
AJLM01000059 3,545 0
AJLM01000006 3,346 0
AJLM01000124 3,321 0
AJLM01000149 3,268 0
AJLM01000129 3,258 0
AJLM01000073 3,249 0
AJLM01000134 3,113 0
AJLM01000078 3,018 0
AJLM01000127 2,589 0
AJLM01000076 2,502 0
AJLM01000079 2,336 0
AJLM01000111 2,278 0
AJLM01000174 2,278 0
AJLM01000080 2,242 0
AJLM01000103 2,205 0
AJLM01000155 2,181 0
AJLM01000023 2,089 0
AJLM01000069 1,999 0
AJLM01000071 1,948 0
AJLM01000070 1,947 0
AJLM01000082 1,925 0
AJLM01000116 1,761 0
AJLM01000029 1,726 0
AJLM01000081 1,680 0
AJLM01000084 1,598 0
AJLM01000072 1,570 0
AJLM01000005 1,569 0
AJLM01000092 1,562 0
AJLM01000147 1,555 0
AJLM01000036 1,482 0
AJLM01000083 1,434 0
AJLM01000128 1,423 0
AJLM01000066 1,408 0
AJLM01000044 1,365 0
AJLM01000068 1,339 0
AJLM01000108 1,214 0
AJLM01000074 1,189 0
AJLM01000159 1,027 0
AJLM01000180 1,004 0
AJLM01000086 975 0
AJLM01000077 936 0
AJLM01000034 912 0
AJLM01000085 864 0
AJLM01000046 859 0
AJLM01000003 843 0
AJLM01000144 739 0
AJLM01000091 700 0
AJLM01000173 644 0
AJLM01000146 642 0
AJLM01000141 633 0
AJLM01000004 585 0
AJLM01000045 557 0
AJLM01000142 503 0
AJLM01000160 488 0
AJLM01000002 462 0
AJLM01000010 428 0
AJLM01000171 400 0
AJLM01000169 399 0
AJLM01000054 399 0
AJLM01000001 381 0
AJLM01000035 345 0
AJLM01000181 343 0
AJLM01000167 341 0
AJLM01000007 324 0
AJLM01000170 314 0
AJLM01000183 314 0
AJLM01000182 308 0
AJLM01000172 302 0
AJLM01000168 297 0
AJLM01000143 289 0
AJLM01000120 289 0
AJLM01000185 263 0
AJLM01000148 262 0
AJLM01000184 243 0
AJLM01000164 237 0
AJLM01000009 235 0
AJLM01000145 211 0
Total 7,649,851 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000317265.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000317265.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000317265.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000317265.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000317265.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000317265.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000317265.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000317265.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000317265.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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