cyanobase » Fischerella muscicola PCC 7414

Fischerella muscicola PCC 7414

Summary

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Data source name GCA_000317205.1
Full name Fischerella muscicola PCC 7414 External
Taxonomy Lineage Cyanobacteria; Stigonematales; Fischerella.

Genome Information

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Chromosomes
Name Size (bp) Genes
AJLK01000109 186,439 0
AJLK01000156 155,665 0
AJLK01000073 147,506 0
AJLK01000087 147,350 0
AJLK01000117 117,502 0
AJLK01000124 116,952 0
AJLK01000058 105,367 0
AJLK01000086 104,868 0
AJLK01000150 102,483 0
AJLK01000189 99,894 0
AJLK01000039 99,665 0
AJLK01000151 97,335 0
AJLK01000085 96,175 0
AJLK01000020 93,255 0
AJLK01000033 89,795 0
AJLK01000163 88,312 0
AJLK01000118 85,047 0
AJLK01000167 83,516 0
AJLK01000013 81,721 0
AJLK01000040 79,786 0
AJLK01000078 79,467 0
AJLK01000131 76,067 0
AJLK01000065 75,961 0
AJLK01000004 72,960 0
AJLK01000207 72,758 0
AJLK01000114 72,567 0
AJLK01000161 70,754 0
AJLK01000076 69,750 0
AJLK01000125 69,150 0
AJLK01000116 66,433 0
AJLK01000201 66,373 0
AJLK01000011 65,266 0
AJLK01000113 62,439 0
AJLK01000030 61,968 0
AJLK01000019 61,589 0
AJLK01000196 60,206 0
AJLK01000130 60,114 0
AJLK01000180 60,105 0
AJLK01000170 57,778 0
AJLK01000110 56,995 0
AJLK01000060 55,553 0
AJLK01000062 55,011 0
AJLK01000035 54,825 0
AJLK01000127 53,944 0
AJLK01000177 51,976 0
AJLK01000057 50,929 0
AJLK01000041 50,389 0
AJLK01000072 50,198 0
AJLK01000153 49,995 0
AJLK01000152 49,259 0
AJLK01000028 48,515 0
AJLK01000081 48,192 0
AJLK01000183 47,811 0
AJLK01000140 46,833 0
AJLK01000146 46,343 0
AJLK01000006 46,305 0
AJLK01000128 44,799 0
AJLK01000029 44,038 0
AJLK01000008 43,021 0
AJLK01000098 42,438 0
AJLK01000126 42,251 0
AJLK01000164 41,941 0
AJLK01000120 41,199 0
AJLK01000182 39,539 0
AJLK01000005 39,217 0
AJLK01000069 39,100 0
AJLK01000024 38,584 0
AJLK01000134 38,081 0
AJLK01000165 37,770 0
AJLK01000121 37,044 0
AJLK01000025 36,966 0
AJLK01000026 36,785 0
AJLK01000172 36,575 0
AJLK01000018 35,421 0
AJLK01000100 35,071 0
AJLK01000036 34,120 0
AJLK01000162 33,536 0
AJLK01000188 33,212 0
AJLK01000158 32,858 0
AJLK01000047 32,843 0
AJLK01000084 32,504 0
AJLK01000042 32,082 0
AJLK01000173 31,665 0
AJLK01000115 30,898 0
AJLK01000007 29,506 0
AJLK01000091 28,438 0
AJLK01000052 28,211 0
AJLK01000070 28,032 0
AJLK01000175 27,840 0
AJLK01000139 27,813 0
AJLK01000148 27,400 0
AJLK01000080 27,007 0
AJLK01000074 26,688 0
AJLK01000032 26,422 0
AJLK01000099 26,131 0
AJLK01000075 25,486 0
AJLK01000103 25,316 0
AJLK01000102 25,200 0
AJLK01000037 24,714 0
AJLK01000106 24,400 0
AJLK01000129 23,439 0
AJLK01000138 23,383 0
AJLK01000003 22,818 0
AJLK01000010 22,515 0
AJLK01000119 22,051 0
AJLK01000012 21,704 0
AJLK01000064 20,809 0
AJLK01000061 20,741 0
AJLK01000023 20,285 0
AJLK01000160 20,249 0
AJLK01000101 19,686 0
AJLK01000105 18,660 0
AJLK01000044 18,659 0
AJLK01000168 18,410 0
AJLK01000171 18,185 0
AJLK01000001 18,126 0
AJLK01000176 17,517 0
AJLK01000059 17,388 0
AJLK01000054 17,062 0
AJLK01000136 16,902 0
AJLK01000174 16,599 0
AJLK01000043 16,422 0
AJLK01000190 16,028 0
AJLK01000169 15,893 0
AJLK01000094 15,817 0
AJLK01000002 15,787 0
AJLK01000166 15,371 0
AJLK01000090 15,226 0
AJLK01000199 15,026 0
AJLK01000093 14,834 0
AJLK01000198 14,480 0
AJLK01000111 14,266 0
AJLK01000048 14,206 0
AJLK01000055 14,150 0
AJLK01000137 14,042 0
AJLK01000122 13,992 0
AJLK01000096 13,963 0
AJLK01000068 13,505 0
AJLK01000154 13,369 0
AJLK01000185 12,956 0
AJLK01000141 12,593 0
AJLK01000045 11,856 0
AJLK01000178 11,808 0
AJLK01000051 11,807 0
AJLK01000017 11,340 0
AJLK01000197 11,235 0
AJLK01000021 11,186 0
AJLK01000077 10,495 0
AJLK01000046 10,407 0
AJLK01000157 10,113 0
AJLK01000038 9,985 0
AJLK01000200 9,788 0
AJLK01000071 9,483 0
AJLK01000097 8,850 0
AJLK01000204 8,256 0
AJLK01000155 7,939 0
AJLK01000191 7,563 0
AJLK01000088 7,040 0
AJLK01000159 6,782 0
AJLK01000202 6,741 0
AJLK01000186 6,579 0
AJLK01000092 6,458 0
AJLK01000143 6,282 0
AJLK01000027 6,113 0
AJLK01000009 5,916 0
AJLK01000095 5,910 0
AJLK01000203 5,565 0
AJLK01000053 5,550 0
AJLK01000133 5,405 0
AJLK01000195 5,333 0
AJLK01000112 4,715 0
AJLK01000181 4,691 0
AJLK01000123 4,673 0
AJLK01000108 4,425 0
AJLK01000056 4,380 0
AJLK01000049 4,289 0
AJLK01000187 4,003 0
AJLK01000184 3,957 0
AJLK01000016 3,893 0
AJLK01000179 3,826 0
AJLK01000031 3,819 0
AJLK01000194 3,736 0
AJLK01000142 3,657 0
AJLK01000107 3,651 0
AJLK01000079 3,572 0
AJLK01000089 3,447 0
AJLK01000211 3,233 0
AJLK01000063 3,189 0
AJLK01000050 3,137 0
AJLK01000135 2,835 0
AJLK01000132 2,797 0
AJLK01000209 2,730 0
AJLK01000082 2,686 0
AJLK01000034 2,583 0
AJLK01000144 2,512 0
AJLK01000206 2,502 0
AJLK01000083 2,395 0
AJLK01000147 2,342 0
AJLK01000212 2,333 0
AJLK01000205 2,284 0
AJLK01000192 2,206 0
AJLK01000149 2,161 0
AJLK01000067 1,894 0
AJLK01000208 1,885 0
AJLK01000145 1,863 0
AJLK01000213 1,766 0
AJLK01000214 1,740 0
AJLK01000022 1,665 0
AJLK01000215 1,638 0
AJLK01000210 1,607 0
AJLK01000066 1,507 0
AJLK01000216 1,480 0
AJLK01000104 1,427 0
AJLK01000217 1,381 0
AJLK01000218 1,351 0
AJLK01000014 1,347 0
AJLK01000219 1,308 0
AJLK01000220 1,170 0
AJLK01000221 1,132 0
AJLK01000222 1,118 0
AJLK01000223 1,099 0
AJLK01000224 1,058 0
AJLK01000225 1,037 0
AJLK01000226 1,029 0
AJLK01000227 895 0
AJLK01000228 885 0
AJLK01000193 823 0
AJLK01000229 822 0
AJLK01000230 703 0
AJLK01000231 701 0
AJLK01000232 673 0
AJLK01000233 634 0
AJLK01000234 623 0
AJLK01000235 606 0
AJLK01000015 605 0
AJLK01000236 587 0
AJLK01000237 531 0
AJLK01000238 504 0
AJLK01000239 479 0
AJLK01000240 471 0
AJLK01000241 464 0
AJLK01000242 454 0
AJLK01000243 453 0
AJLK01000244 438 0
AJLK01000245 425 0
AJLK01000246 421 0
AJLK01000247 394 0
AJLK01000248 370 0
AJLK01000249 369 0
AJLK01000250 361 0
AJLK01000251 346 0
AJLK01000252 342 0
AJLK01000253 331 0
AJLK01000254 329 0
AJLK01000255 310 0
AJLK01000256 306 0
AJLK01000257 289 0
AJLK01000258 288 0
AJLK01000259 282 0
AJLK01000260 278 0
AJLK01000261 265 0
AJLK01000262 263 0
AJLK01000264 241 0
AJLK01000263 240 0
AJLK01000265 238 0
AJLK01000266 228 0
AJLK01000267 222 0
AJLK01000268 215 0
AJLK01000269 207 0
AJLK01000270 206 0
AJLK01000271 204 0
Total 6,902,954 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000317205.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000317205.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000317205.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000317205.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000317205.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000317205.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000317205.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000317205.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000317205.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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