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cyanobase » Microcystis aeruginosa PCC 9701

Microcystis aeruginosa PCC 9701

Summary

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Data source name GCA_000312285.1
Full name Microcystis aeruginosa PCC 9701
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.

Genome Information

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Chromosomes
Name Size (bp) Genes
HE974183 1,010,642 932
HE974191 766,571 774
HE974173 487,117 475
HE974200 440,374 377
HE974190 67,154 69
CAIQ01000048 43,069 52
CAIQ01000124 40,657 34
CAIQ01000505 40,356 46
CAIQ01000135 33,975 30
CAIQ01000513 33,696 28
CAIQ01000009 32,969 32
CAIQ01000168 31,183 33
CAIQ01000268 29,431 26
CAIQ01000043 27,564 34
CAIQ01000523 26,010 33
CAIQ01000101 25,041 21
CAIQ01000005 23,532 24
CAIQ01000516 23,302 22
CAIQ01000509 22,024 23
CAIQ01000546 21,118 22
CAIQ01000368 20,649 17
CAIQ01000112 20,086 18
CAIQ01000025 20,017 18
CAIQ01000301 19,968 13
CAIQ01000002 19,263 17
CAIQ01000014 18,821 20
CAIQ01000011 18,340 18
CAIQ01000520 17,974 19
CAIQ01000530 17,854 11
CAIQ01000079 17,709 18
CAIQ01000028 17,016 20
CAIQ01000090 16,895 21
CAIQ01000017 16,882 16
CAIQ01000016 16,845 19
CAIQ01000535 16,834 15
CAIQ01000543 16,813 16
CAIQ01000042 16,639 20
CAIQ01000531 16,471 17
CAIQ01000501 16,019 15
CAIQ01000026 15,877 16
CAIQ01000021 15,803 14
CAIQ01000515 15,744 13
CAIQ01000508 15,354 14
CAIQ01000390 15,344 15
CAIQ01000037 15,267 19
CAIQ01000335 15,267 27
CAIQ01000012 15,224 12
CAIQ01000201 15,141 14
CAIQ01000412 14,868 14
CAIQ01000038 14,843 21
CAIQ01000007 14,676 11
CAIQ01000524 14,575 17
CAIQ01000334 14,065 12
CAIQ01000346 14,058 11
CAIQ01000518 13,703 15
CAIQ01000521 13,663 10
CAIQ01000050 13,459 9
CAIQ01000157 13,314 12
CAIQ01000057 13,305 12
CAIQ01000008 13,103 11
CAIQ01000468 11,776 12
CAIQ01000510 11,736 8
CAIQ01000190 11,651 12
CAIQ01000290 11,547 12
CAIQ01000545 11,280 12
CAIQ01000223 11,224 13
CAIQ01000532 11,084 10
CAIQ01000052 10,666 20
CAIQ01000056 10,527 8
CAIQ01000036 10,523 6
CAIQ01000536 10,213 13
CAIQ01000003 10,184 12
CAIQ01000529 10,167 8
CAIQ01000548 9,988 9
CAIQ01000031 9,807 9
CAIQ01000279 9,773 11
CAIQ01000434 9,584 6
CAIQ01000527 9,478 11
CAIQ01000235 9,411 9
CAIQ01000507 9,267 10
CAIQ01000047 9,265 9
CAIQ01000058 9,188 8
CAIQ01000027 9,172 11
CAIQ01000022 8,936 8
CAIQ01000068 8,911 5
CAIQ01000423 8,444 8
CAIQ01000039 8,413 8
CAIQ01000517 8,269 1
CAIQ01000379 7,889 6
CAIQ01000040 7,797 8
CAIQ01000030 7,770 4
CAIQ01000506 7,655 7
CAIQ01000550 7,561 7
CAIQ01000032 7,439 6
CAIQ01000479 7,395 5
CAIQ01000401 7,394 16
CAIQ01000511 7,166 6
CAIQ01000446 7,160 7
CAIQ01000522 7,045 7
CAIQ01000053 6,745 6
CAIQ01000055 6,734 10
CAIQ01000004 6,682 5
CAIQ01000534 6,536 10
CAIQ01000010 6,533 9
CAIQ01000544 6,320 9
CAIQ01000540 6,307 6
CAIQ01000023 6,233 4
CAIQ01000029 6,197 7
CAIQ01000538 6,194 4
CAIQ01000212 6,152 4
CAIQ01000146 6,120 10
CAIQ01000049 6,100 4
CAIQ01000034 5,839 6
CAIQ01000045 5,820 7
CAIQ01000006 5,818 6
CAIQ01000019 5,766 12
CAIQ01000051 5,694 6
CAIQ01000528 5,675 4
CAIQ01000490 5,574 4
CAIQ01000033 5,500 7
CAIQ01000539 5,485 3
HE974210 5,296 4
CAIQ01000013 5,268 3
CAIQ01000246 5,252 5
CAIQ01000547 5,219 8
CAIQ01000257 4,979 7
CAIQ01000046 4,931 3
HE974213 4,920 2
CAIQ01000514 4,807 3
CAIQ01000024 4,657 5
CAIQ01000512 4,592 3
CAIQ01000020 4,587 3
HE974192 4,428 2
CAIQ01000041 4,360 3
CAIQ01000035 4,289 3
HE974181 4,122 6
CAIQ01000054 4,079 3
CAIQ01000504 4,058 5
HE974179 4,035 5
HE974187 4,002 5
CAIQ01000526 3,995 6
CAIQ01000525 3,950 3
HE974176 3,885 2
HE974185 3,820 5
CAIQ01000542 3,792 6
HE974211 3,792 3
HE974199 3,770 3
CAIQ01000224 3,762 2
HE974188 3,727 3
HE974197 3,717 4
CAIQ01000312 3,678 3
CAIQ01000357 3,647 4
CAIQ01000533 3,605 6
HE974193 3,601 2
HE974205 3,583 3
CAIQ01000457 3,527 4
CAIQ01000179 3,464 1
HE974201 3,463 5
CAIQ01000018 3,446 4
HE974189 3,346 1
CAIQ01000537 3,325 2
HE974184 3,279 5
HE974177 3,257 4
CAIQ01000113 3,255 3
HE974196 3,250 3
HE974180 3,078 1
HE974206 3,061 2
HE974182 3,025 3
CAIQ01000541 2,846 0
HE974175 2,782 1
HE974172 2,757 3
HE974198 2,747 5
HE974178 2,718 3
HE974203 2,657 1
CAIQ01000323 2,617 2
HE974209 2,563 2
HE974170 2,553 2
HE974202 2,457 3
HE974195 2,399 2
HE974186 2,357 2
CAIQ01000549 2,267 3
HE974212 2,248 5
HE974194 2,213 2
HE974204 2,209 2
HE974208 2,117 3
HE974174 2,113 2
HE974207 2,109 2
HE974171 2,106 2
CAIQ01000015 2,024 2
HE974226 2,019 3
HE974283 2,015 3
HE974233 2,015 0
CAIQ01000503 1,975 2
HE974340 1,973 1
HE974289 1,962 2
HE974320 1,930 1
HE974333 1,916 1
HE974330 1,882 1
HE974227 1,835 3
HE974303 1,769 2
CAIQ01000044 1,744 2
HE974249 1,733 2
HE974267 1,732 2
CAIQ01000445 1,728 3
HE974293 1,699 1
HE974331 1,663 2
HE974296 1,660 4
HE974236 1,625 1
HE974262 1,605 0
HE974252 1,590 2
HE974297 1,587 0
HE974286 1,565 2
HE974239 1,562 2
CAIQ01000001 1,562 0
HE974304 1,552 1
HE974243 1,541 1
HE974334 1,514 1
HE974272 1,513 1
HE974291 1,478 2
HE974271 1,450 2
HE974301 1,396 3
HE974232 1,377 0
HE974279 1,376 1
HE974261 1,375 1
HE974292 1,373 1
HE974248 1,368 1
HE974253 1,366 1
HE974270 1,365 1
HE974258 1,340 1
HE974298 1,335 1
HE974302 1,332 2
HE974335 1,329 1
HE974234 1,323 2
HE974217 1,297 2
HE974310 1,297 0
HE974259 1,268 1
HE974307 1,256 1
HE974332 1,251 1
HE974263 1,234 4
HE974306 1,207 1
HE974300 1,182 2
HE974223 1,180 1
HE974224 1,137 2
HE974218 1,136 0
HE974294 1,124 0
HE974235 1,103 1
HE974316 1,100 0
HE974277 1,087 1
HE974241 1,081 1
CAIQ01000060 1,061 1
HE974337 1,052 0
HE974268 1,043 1
HE974250 1,032 0
HE974315 1,018 0
CAIQ01000059 977 0
HE974240 965 1
HE974323 953 1
HE974221 953 0
HE974276 940 0
HE974295 938 1
HE974246 920 0
HE974264 912 1
HE974216 911 1
HE974327 910 0
HE974280 899 0
HE974339 899 0
HE974311 894 1
HE974325 866 0
HE974255 866 2
HE974287 862 1
HE974285 860 0
HE974229 852 0
HE974314 852 1
HE974308 849 1
HE974318 844 0
HE974321 815 0
HE974260 815 0
HE974282 806 0
HE974256 802 1
HE974257 799 1
HE974288 797 0
HE974290 793 0
HE974309 782 1
HE974317 779 0
HE974322 777 0
HE974215 775 0
HE974237 762 0
HE974278 756 0
HE974319 753 0
HE974242 745 0
HE974231 743 1
HE974324 740 0
HE974329 735 2
CAIQ01000519 722 0
HE974225 714 2
HE974338 714 0
HE974247 711 0
HE974336 698 1
HE974228 696 0
HE974269 694 1
HE974245 687 0
HE974214 684 1
HE974220 680 1
HE974222 678 1
HE974275 677 0
HE974312 669 1
HE974284 660 0
HE974254 659 0
HE974326 657 1
HE974305 651 1
HE974238 649 0
HE974251 649 1
HE974265 641 0
HE974219 633 0
HE974244 622 0
HE974230 620 0
HE974274 620 0
HE974273 620 0
HE974281 620 0
HE974266 612 0
HE974299 610 1
HE974328 606 1
HE974313 602 1
Total 4,755,998 4,542
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000312285.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000312285.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000312285.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000312285.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000312285.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000312285.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000312285.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000312285.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000312285.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000312285.1/genes/interpro.txt (File format)

MicrobeBase