cyanobase » Microcystis aeruginosa PCC 9809

Microcystis aeruginosa PCC 9809

Summary

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Data source name GCA_000312265.1
Full name Microcystis aeruginosa PCC 9809 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.

Genome Information

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Chromosomes
Name Size (bp) Genes
HE973753 895,631 821
HE973734 486,866 485
HE973759 482,915 495
HE973756 408,683 336
HE973763 389,357 384
HE973742 306,064 318
HE973776 286,216 260
HE973777 224,400 186
HE973754 200,548 190
HE973781 185,823 161
HE973766 178,835 175
HE973750 140,160 141
HE973780 133,353 129
HE973725 126,019 111
HE973774 46,592 37
HE973761 41,698 45
HE973724 39,326 36
HE973721 31,218 31
HE973738 27,178 26
HE973751 5,700 4
HE973737 4,509 5
HE973768 3,848 3
HE973748 3,798 2
HE973767 3,581 3
HE973735 3,453 3
HE973762 3,358 4
HE973752 3,273 1
HE973730 3,204 2
HE973741 3,196 4
HE973760 3,116 4
HE973765 3,091 2
HE973740 3,042 3
HE973729 3,027 3
HE973736 3,013 7
HE973773 2,980 2
HE973771 2,915 3
HE973731 2,914 3
HE973723 2,870 2
HE973772 2,865 2
HE973728 2,861 2
HE973757 2,791 2
HE973744 2,753 4
HE973758 2,700 3
HE973770 2,674 2
HE973733 2,660 2
HE973745 2,641 2
HE973769 2,598 3
HE973726 2,577 2
HE973746 2,465 4
HE973739 2,422 4
HE973743 2,376 2
HE973749 2,369 1
HE973779 2,338 6
HE973747 2,289 2
HE973764 2,269 5
HE973732 2,262 3
HE973722 2,229 2
HE973727 2,188 2
HE973778 2,146 2
HE973775 2,136 1
HE973755 2,130 1
HE973924 2,095 2
HE973843 2,073 1
HE973802 2,062 3
HE973950 2,050 4
HE973787 2,002 4
HE973940 1,986 4
HE973938 1,926 2
HE973948 1,925 1
HE973944 1,921 2
HE973920 1,879 3
HE973799 1,862 1
HE974010 1,862 1
HE973872 1,847 0
HE973930 1,846 2
HE973907 1,838 1
HE973851 1,796 1
HE973876 1,796 1
HE973855 1,792 5
HE973880 1,788 1
HE974002 1,756 1
HE973971 1,742 1
HE973912 1,736 1
HE973854 1,727 1
HE973915 1,724 1
HE973835 1,710 1
HE973825 1,704 2
HE973936 1,696 3
HE973949 1,692 2
HE973803 1,662 1
HE973921 1,640 2
HE973984 1,634 1
HE973886 1,631 1
HE973870 1,618 2
HE973808 1,601 3
HE973863 1,595 2
HE973939 1,579 4
HE973899 1,558 2
HE973926 1,551 3
HE973943 1,545 2
HE973868 1,512 0
HE973856 1,499 2
HE973840 1,499 2
HE973792 1,474 2
HE973962 1,465 2
HE974020 1,445 3
HE973898 1,439 1
HE973838 1,434 1
HE973986 1,394 1
HE973990 1,388 3
HE973961 1,383 1
HE973812 1,372 1
HE973892 1,365 2
HE973878 1,360 2
HE973975 1,357 2
HE973790 1,352 2
HE973815 1,346 2
HE973833 1,343 2
HE973976 1,330 2
HE973947 1,321 0
HE973958 1,317 2
HE973785 1,311 0
HE974014 1,311 1
HE973917 1,297 3
HE973988 1,296 1
HE973919 1,284 1
HE973832 1,282 2
HE973842 1,273 2
HE974000 1,271 0
HE973902 1,261 2
HE973867 1,253 1
HE973847 1,251 2
HE973829 1,247 1
HE973857 1,239 2
HE973903 1,227 0
HE973819 1,220 2
HE973946 1,215 1
HE973928 1,197 2
HE973967 1,188 0
HE973909 1,181 2
HE973977 1,179 2
HE973813 1,172 2
HE973914 1,168 2
HE973905 1,159 2
HE973999 1,139 1
HE973822 1,133 1
HE973966 1,127 1
HE973817 1,125 0
HE974021 1,115 3
HE973827 1,109 2
HE973794 1,105 0
HE973908 1,103 2
HE973992 1,102 0
HE973959 1,086 2
HE973879 1,078 0
HE973796 1,074 1
HE973918 1,065 1
HE973841 1,064 1
HE974022 1,064 1
HE973798 1,061 1
HE973929 1,061 3
HE974012 1,059 0
HE974009 1,053 1
HE973965 1,051 1
HE974015 1,051 1
HE973791 1,047 1
HE973941 1,032 2
HE973942 1,010 2
HE973823 1,005 1
HE973820 1,001 1
HE973951 998 1
HE973910 994 2
HE973800 993 2
HE973811 988 0
HE973824 986 0
HE973814 979 0
HE973927 978 1
HE973789 975 2
HE973913 971 1
HE973786 966 0
HE973987 959 1
HE973894 956 0
HE973983 953 2
HE973836 944 1
HE973906 938 0
HE973973 928 0
HE973831 927 0
HE974018 926 0
HE974006 912 1
HE973845 908 2
HE973955 905 1
HE973934 904 1
HE973957 904 0
HE974005 902 1
HE973932 889 0
HE973985 884 0
HE973853 884 1
HE973828 883 1
HE973935 879 0
HE973830 877 2
HE973866 873 0
HE973997 871 0
HE973981 865 1
HE973804 861 2
HE973846 856 1
HE973991 850 0
HE973784 849 0
HE973882 841 0
HE973839 837 0
HE973782 832 0
HE973783 829 0
HE973995 828 1
HE973922 827 0
HE973989 821 0
HE973864 821 0
HE973884 821 2
HE973877 821 0
HE973834 819 0
HE973801 813 0
HE974019 812 2
HE973887 810 2
HE973826 807 2
HE973974 806 0
HE973875 805 1
HE973807 798 0
HE973844 797 2
HE973891 795 0
HE973861 794 1
HE973895 793 0
HE973881 792 0
HE973821 790 2
HE973805 790 0
HE973996 775 0
HE973883 773 0
HE973797 772 1
HE973916 770 1
HE973980 769 2
HE973964 768 0
HE973972 768 1
HE974017 758 1
HE974008 757 0
HE973937 747 1
HE973890 744 0
HE973994 741 1
HE973793 741 0
HE974011 740 1
HE973979 739 0
HE973862 739 0
HE974016 734 1
HE973860 734 1
HE973901 734 0
HE973889 733 1
HE973933 732 1
HE973896 726 0
HE973850 725 0
HE973859 715 2
HE973888 709 0
HE973865 707 1
HE973952 706 0
HE973993 706 1
HE973788 705 0
HE973810 704 0
HE973848 701 2
HE973871 696 1
HE974003 696 0
HE973931 691 1
HE973873 690 0
HE973968 687 0
HE973874 686 1
HE973893 686 0
HE973869 686 0
HE974023 677 0
HE973897 674 0
HE974013 668 0
HE973849 668 1
HE973852 666 1
HE974001 666 1
HE973900 665 0
HE973963 665 1
HE973816 662 0
HE973885 662 0
HE973978 657 0
HE973982 652 0
HE973954 651 1
HE973911 649 2
HE973818 647 0
HE973904 644 1
HE973806 642 0
HE973858 641 1
HE973960 640 1
HE973837 633 1
HE974007 626 0
HE973970 623 1
HE973945 621 1
HE973925 620 2
HE973956 617 1
HE973969 608 0
HE973953 606 0
HE973923 602 0
HE973809 602 0
HE974004 602 1
HE973795 602 1
HE973998 601 1
Total 5,011,016 4,742
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000312265.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000312265.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000312265.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000312265.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000312265.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000312265.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000312265.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000312265.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000312265.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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