cyanobase » Microcystis aeruginosa PCC 9443

Microcystis aeruginosa PCC 9443

Summary

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Data source name GCA_000312185.1
Full name Microcystis aeruginosa PCC 9443 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.

Genome Information

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Chromosomes
Name Size (bp) Genes
HE972990 196,505 164
HE973002 174,813 160
HE972931 173,427 146
HE973010 164,288 190
HE973011 160,453 159
HE972966 155,317 148
HE973014 155,134 138
HE972954 143,348 120
HE972947 142,948 143
HE972973 135,271 132
HE972953 122,060 112
HE972939 120,819 108
HE973008 118,910 119
HE972962 105,035 98
HE973005 104,221 113
HE972989 100,857 90
HE973013 100,693 101
HE972994 98,671 99
HE972981 98,118 106
HE972961 97,076 98
HE972998 94,545 98
HE972943 91,677 73
HE972951 83,950 59
HE972977 79,486 35
HE972955 71,121 63
HE972933 70,154 66
HE972958 69,325 74
HE972982 68,389 78
HE972985 68,264 58
HE972937 62,007 51
HE972968 59,456 58
HE972992 58,389 54
HE973012 57,757 49
HE973001 57,082 58
HE972997 55,786 45
HE973004 54,780 51
HE972996 54,437 52
HE972964 53,747 48
HE972928 53,101 44
HE973009 52,709 57
HE972991 48,744 54
HE972924 48,568 48
HE973006 47,374 37
HE972941 44,322 42
HE972923 41,696 35
HE973003 37,722 30
HE972975 37,714 50
HE972999 37,098 37
HE972944 36,989 27
HE972922 36,714 35
HE972988 34,985 29
HE972936 34,006 32
HE972963 31,465 18
HE972940 31,026 31
HE973017 29,973 20
HE972938 29,219 32
HE972983 28,608 30
HE972984 28,248 29
HE972950 26,579 22
HE973015 25,872 22
HE972960 24,519 12
HE972946 23,901 27
HE972948 22,602 20
HE972976 21,515 18
HE972971 20,502 24
HE972945 19,162 20
HE972934 18,161 15
HE972930 16,132 18
HE972972 14,532 19
HE972965 13,436 11
HE972927 12,587 11
HE972935 12,523 6
HE972942 12,260 12
HE972967 12,152 8
HE972929 11,023 12
HE972956 10,479 13
HE972969 10,276 20
HE972993 9,577 10
HE973016 7,806 8
HE972926 7,187 10
HE972995 7,063 5
HE972980 6,882 8
HE972949 6,420 11
HE972970 6,311 7
HE972978 5,788 6
HE973000 5,025 6
HE972925 4,395 2
HE972987 4,341 3
HE972952 3,954 6
HE972974 3,682 6
HE972959 2,968 0
HE972979 2,933 4
HE973007 2,797 4
HE972986 2,427 2
HE972932 2,228 3
HE972957 2,154 2
HE973077 1,854 2
HE973125 1,550 1
HE973126 1,522 2
HE973089 1,498 1
HE973063 1,477 3
HE973022 1,426 2
HE973112 1,414 1
HE973108 1,396 1
HE973066 1,384 3
HE973087 1,375 2
HE973121 1,368 3
HE973130 1,350 2
HE973122 1,323 2
HE973097 1,289 1
HE973113 1,257 0
HE973071 1,235 2
HE973107 1,195 1
HE973078 1,191 2
HE973031 1,188 2
HE973033 1,179 1
HE973038 1,149 3
HE973018 1,136 0
HE973051 1,134 0
HE973119 1,126 1
HE973085 1,109 1
HE973061 1,090 2
HE973123 1,071 0
HE973127 1,068 2
HE973065 1,063 0
HE973043 1,062 1
HE973020 1,056 1
HE973041 1,039 1
HE973044 1,034 0
HE973028 1,034 1
HE973093 1,033 1
HE973055 1,027 0
HE973074 1,016 2
HE973117 1,008 1
HE973037 1,002 1
HE973075 1,000 0
HE973116 999 0
HE973072 996 1
HE973084 976 0
HE973060 943 0
HE973079 926 3
HE973086 922 1
HE973134 920 1
HE973103 920 0
HE973096 918 2
HE973026 917 1
HE973083 915 2
HE973036 913 0
HE973050 904 1
HE973049 901 2
HE973062 897 1
HE973129 892 0
HE973052 877 2
HE973101 876 0
HE973115 869 0
HE973027 859 2
HE973023 857 1
HE973132 855 0
HE973114 848 2
HE973094 840 0
HE973034 835 0
HE973082 829 0
HE973059 827 0
HE973035 826 0
HE973124 825 0
HE973095 811 1
HE973070 802 0
HE973098 791 0
HE973046 789 1
HE973068 789 1
HE973030 786 0
HE973105 783 0
HE973076 781 0
HE973040 781 0
HE973081 781 0
HE973064 780 1
HE973025 779 1
HE973137 778 1
HE973099 776 0
HE973141 774 0
HE973058 763 2
HE973021 761 1
HE973128 750 0
HE973047 748 2
HE973045 747 0
HE973104 740 0
HE973131 737 1
HE973090 736 0
HE973109 733 2
HE973135 731 0
HE973069 731 1
HE973042 723 1
HE973092 721 1
HE973073 715 0
HE973057 711 0
HE973056 702 0
HE973139 700 0
HE973110 696 1
HE973111 692 0
HE973138 686 0
HE973080 685 1
HE973019 680 0
HE973032 677 1
HE973039 673 0
HE973029 665 1
HE973088 663 0
HE973053 663 0
HE973024 649 0
HE973067 640 0
HE973118 639 0
HE973100 636 0
HE973120 636 0
HE973102 630 0
HE973106 628 1
HE973133 623 1
HE973048 621 1
HE973054 604 1
HE973136 604 0
HE973091 604 0
HE973140 603 1
HE973142 556 0
Total 5,185,041 4,844
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000312185.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000312185.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000312185.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000312185.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000312185.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000312185.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000312185.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000312185.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000312185.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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