cyanobase » Tolypothrix sp. PCC 7601

Tolypothrix sp. PCC 7601

Summary

? | +/- | Top
Data source name GCA_000300115.1
Full name Tolypothrix sp. PCC 7601 External
Taxonomy Lineage Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
JH930357 2,130,100 2,107
JH930358 917,944 956
JH930359 594,120 579
JH930360 542,731 532
JH930361 535,494 620
JH930362 520,995 525
JH930363 510,341 519
JH930364 454,059 456
JH930365 440,366 370
JH930366 359,964 381
JH930367 347,850 361
JH930368 334,816 318
JH930369 265,808 267
JH930370 248,094 297
JH930371 213,943 208
JH930372 200,357 188
JH930373 187,189 219
JH930374 126,302 112
JH930375 122,846 111
JH930376 117,462 125
JH930377 107,817 115
JH930378 102,800 105
JH930379 75,529 76
JH930380 68,542 75
JH930381 51,646 49
JH930382 45,449 38
JH930398 42,952 57
JH930399 42,408 37
JH930383 41,254 40
JH930384 41,134 32
JH930385 38,031 46
JH930386 37,774 42
JH930397 33,253 46
JH930387 31,800 13
JH930388 14,900 17
JH930389 12,751 16
JH930390 10,290 8
JH930391 2,359 1
JH930392 1,255 1
JH930393 912 4
JH930394 754 1
JH930395 543 2
JH930396 208 0
Total 9,975,142 10,072
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset GCA_000300115.1

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000300115.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000300115.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000300115.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000300115.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000300115.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000300115.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000300115.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000300115.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer