cyanobase » Microcystis sp. T1-4

Microcystis sp. T1-4

Summary

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Data source name GCA_000297435.1
Full name Microcystis sp. T1-4 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.

Genome Information

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Chromosomes
Name Size (bp) Genes
CAIP01000402 73,081 73
CAIP01000214 63,750 48
CAIP01000244 62,669 62
CAIP01000009 60,383 66
CAIP01000415 57,472 57
CAIP01000187 56,097 44
CAIP01000146 54,760 46
CAIP01000419 54,006 49
CAIP01000155 49,420 53
CAIP01000421 45,198 49
CAIP01000073 44,228 28
CAIP01000128 42,514 43
CAIP01000413 42,401 33
CAIP01000186 42,116 38
CAIP01000040 41,850 52
CAIP01000368 40,901 46
CAIP01000174 40,722 38
CAIP01000021 39,498 42
CAIP01000442 38,558 26
CAIP01000119 35,929 41
CAIP01000346 35,750 29
CAIP01000031 35,418 27
CAIP01000170 34,561 36
CAIP01000144 34,391 36
CAIP01000123 33,900 22
CAIP01000004 33,764 29
CAIP01000107 33,520 36
CAIP01000212 32,729 26
CAIP01000177 32,652 39
CAIP01000019 32,237 30
CAIP01000147 31,931 29
CAIP01000074 31,554 35
CAIP01000115 31,533 42
CAIP01000414 30,358 31
CAIP01000093 30,160 32
CAIP01000247 29,224 33
CAIP01000323 29,183 28
CAIP01000290 29,182 27
CAIP01000391 28,235 29
CAIP01000056 28,024 26
CAIP01000092 27,896 18
CAIP01000139 27,540 22
CAIP01000045 27,107 25
CAIP01000172 27,052 25
CAIP01000279 26,804 24
CAIP01000440 26,596 29
CAIP01000062 26,203 32
CAIP01000405 25,531 29
CAIP01000222 25,439 19
CAIP01000194 25,238 29
CAIP01000049 25,162 16
CAIP01000250 25,042 21
CAIP01000411 25,028 24
CAIP01000054 25,004 22
CAIP01000140 24,970 29
CAIP01000409 24,911 26
CAIP01000026 24,856 27
CAIP01000412 24,787 30
CAIP01000124 24,469 28
CAIP01000430 24,355 13
CAIP01000433 24,191 22
CAIP01000205 24,075 24
CAIP01000025 24,074 21
CAIP01000099 24,028 24
CAIP01000392 24,014 31
CAIP01000425 23,879 24
CAIP01000131 23,408 24
CAIP01000109 23,280 18
CAIP01000227 23,234 13
CAIP01000183 22,899 23
CAIP01000132 22,398 23
CAIP01000394 22,018 26
CAIP01000083 20,511 29
CAIP01000190 20,422 15
CAIP01000398 19,973 13
CAIP01000158 19,931 14
CAIP01000096 19,803 19
CAIP01000152 19,656 14
CAIP01000110 19,353 30
CAIP01000404 19,234 19
CAIP01000095 19,040 12
CAIP01000098 18,858 13
CAIP01000185 18,807 16
CAIP01000209 18,753 20
CAIP01000192 18,641 33
CAIP01000084 18,570 16
CAIP01000184 18,524 11
CAIP01000438 18,436 19
CAIP01000390 18,289 17
CAIP01000088 18,244 17
CAIP01000122 17,920 14
CAIP01000195 17,848 16
CAIP01000038 17,793 19
CAIP01000154 17,637 13
CAIP01000249 17,543 16
CAIP01000094 17,455 17
CAIP01000235 17,452 23
CAIP01000301 16,997 21
CAIP01000429 16,763 7
CAIP01000445 16,618 21
CAIP01000020 16,508 15
CAIP01000176 16,399 17
CAIP01000234 16,367 16
CAIP01000046 16,295 18
CAIP01000171 16,263 15
CAIP01000082 16,152 14
CAIP01000237 16,081 14
CAIP01000168 16,025 19
CAIP01000213 15,953 18
CAIP01000424 15,950 19
CAIP01000078 15,897 16
CAIP01000232 15,673 17
CAIP01000199 15,664 16
CAIP01000003 15,635 9
CAIP01000106 15,459 13
CAIP01000182 15,342 15
CAIP01000014 15,190 1
CAIP01000257 15,164 13
CAIP01000379 15,120 15
CAIP01000085 15,085 10
CAIP01000034 15,050 15
CAIP01000193 14,287 13
CAIP01000103 14,079 13
CAIP01000248 13,976 18
CAIP01000416 13,930 14
CAIP01000150 13,850 9
CAIP01000397 13,642 16
CAIP01000220 13,544 13
CAIP01000231 13,523 12
CAIP01000407 13,401 11
CAIP01000161 13,154 15
CAIP01000224 12,950 11
CAIP01000225 12,738 10
CAIP01000011 12,687 12
CAIP01000032 12,684 11
CAIP01000145 12,393 10
CAIP01000241 12,362 8
CAIP01000037 12,271 13
CAIP01000043 12,015 12
CAIP01000432 11,905 9
CAIP01000312 11,846 15
CAIP01000230 11,746 14
CAIP01000022 11,727 10
CAIP01000134 11,650 10
CAIP01000113 11,617 12
CAIP01000101 11,552 9
CAIP01000153 11,501 9
CAIP01000216 11,425 11
CAIP01000053 11,362 9
CAIP01000165 11,304 17
CAIP01000427 11,123 10
CAIP01000039 11,116 12
CAIP01000434 11,032 13
CAIP01000410 10,608 13
CAIP01000181 10,199 10
CAIP01000143 10,074 14
CAIP01000160 10,023 9
CAIP01000180 9,983 10
CAIP01000102 9,953 9
CAIP01000228 9,931 9
CAIP01000105 9,823 8
CAIP01000403 9,608 5
CAIP01000426 9,551 12
CAIP01000125 9,309 11
CAIP01000393 9,285 10
CAIP01000188 9,127 6
CAIP01000087 9,114 6
CAIP01000396 9,102 8
CAIP01000197 8,965 11
CAIP01000130 8,954 8
CAIP01000030 8,929 9
CAIP01000236 8,866 6
CAIP01000169 8,779 10
CAIP01000229 8,775 5
CAIP01000075 8,726 8
CAIP01000028 8,613 10
CAIP01000116 8,592 8
CAIP01000251 8,582 1
CAIP01000076 8,529 6
CAIP01000059 8,527 5
CAIP01000240 8,511 15
CAIP01000203 8,498 16
CAIP01000149 8,205 6
CAIP01000027 8,157 8
CAIP01000226 8,087 6
CAIP01000127 8,085 12
CAIP01000211 8,032 8
CAIP01000055 8,030 15
CAIP01000400 7,909 6
CAIP01000198 7,787 9
CAIP01000050 7,762 5
CAIP01000200 7,729 9
CAIP01000431 7,683 8
CAIP01000057 7,402 9
CAIP01000118 7,338 9
CAIP01000070 7,295 8
CAIP01000233 7,200 7
CAIP01000060 6,912 8
CAIP01000047 6,842 7
CAIP01000137 6,654 7
CAIP01000017 6,447 2
CAIP01000114 6,414 6
CAIP01000108 6,375 6
CAIP01000420 6,323 7
CAIP01000422 6,208 8
CAIP01000036 6,175 4
CAIP01000090 6,136 8
CAIP01000052 6,109 3
CAIP01000357 6,008 5
CAIP01000051 5,984 8
CAIP01000156 5,976 5
CAIP01000089 5,956 7
CAIP01000012 5,868 4
CAIP01000443 5,862 1
CAIP01000058 5,860 5
CAIP01000048 5,856 5
CAIP01000068 5,743 8
CAIP01000268 5,596 13
CAIP01000002 5,463 8
CAIP01000444 5,424 6
CAIP01000138 5,331 6
CAIP01000255 5,229 2
CAIP01000135 5,206 4
CAIP01000408 5,199 1
CAIP01000401 5,196 7
CAIP01000418 5,183 4
CAIP01000437 5,160 5
CAIP01000064 5,149 6
CAIP01000167 5,123 4
CAIP01000204 5,094 5
CAIP01000164 5,053 5
CAIP01000029 5,037 3
CAIP01000242 4,959 6
CAIP01000117 4,955 8
CAIP01000091 4,936 7
CAIP01000104 4,903 3
CAIP01000067 4,897 5
CAIP01000207 4,799 0
CAIP01000189 4,774 5
CAIP01000097 4,763 2
CAIP01000129 4,754 4
CAIP01000061 4,679 5
CAIP01000024 4,570 4
CAIP01000449 4,561 4
CAIP01000033 4,550 7
CAIP01000441 4,526 5
CAIP01000010 4,524 2
CAIP01000175 4,479 3
CAIP01000120 4,477 4
CAIP01000159 4,423 3
CAIP01000221 4,422 4
CAIP01000151 4,421 3
CAIP01000423 4,412 3
CAIP01000202 4,411 6
CAIP01000178 4,383 6
CAIP01000072 4,221 5
CAIP01000218 4,140 5
CAIP01000133 4,134 8
CAIP01000243 4,095 3
CAIP01000210 4,062 5
CAIP01000335 3,991 4
CAIP01000208 3,842 2
CAIP01000446 3,789 3
CAIP01000219 3,714 4
CAIP01000141 3,710 3
CAIP01000162 3,698 3
CAIP01000179 3,670 2
CAIP01000069 3,652 2
CAIP01000016 3,647 0
CAIP01000245 3,606 2
CAIP01000206 3,585 3
CAIP01000163 3,571 3
CAIP01000173 3,561 5
CAIP01000015 3,561 0
CAIP01000428 3,523 2
CAIP01000157 3,485 4
CAIP01000121 3,403 2
CAIP01000065 3,391 2
CAIP01000196 3,391 2
CAIP01000246 3,305 6
CAIP01000447 3,277 3
CAIP01000406 3,168 8
CAIP01000126 3,128 4
CAIP01000142 3,119 7
CAIP01000448 3,086 5
CAIP01000223 2,983 1
CAIP01000044 2,913 3
CAIP01000191 2,909 3
CAIP01000081 2,855 0
CAIP01000071 2,794 3
CAIP01000086 2,790 2
CAIP01000148 2,775 2
CAIP01000006 2,756 5
CAIP01000018 2,692 3
CAIP01000217 2,690 4
CAIP01000013 2,680 0
CAIP01000008 2,644 2
CAIP01000252 2,615 0
CAIP01000111 2,611 5
CAIP01000439 2,603 3
CAIP01000001 2,563 1
CAIP01000035 2,557 1
CAIP01000435 2,513 0
CAIP01000042 2,502 3
CAIP01000112 2,500 5
CAIP01000079 2,486 2
CAIP01000077 2,451 0
CAIP01000253 2,308 2
CAIP01000063 2,225 2
CAIP01000023 2,194 2
CAIP01000334 2,180 1
CAIP01000201 2,167 0
CAIP01000238 2,142 2
CAIP01000080 2,078 0
CAIP01000041 2,069 2
CAIP01000256 2,054 2
CAIP01000254 2,039 1
CAIP01000417 2,012 2
CAIP01000100 1,997 1
CAIP01000399 1,967 1
CAIP01000351 1,967 3
CAIP01000272 1,949 2
CAIP01000339 1,936 1
CAIP01000280 1,930 4
CAIP01000166 1,848 3
CAIP01000293 1,840 3
CAIP01000277 1,835 1
CAIP01000362 1,814 1
CAIP01000363 1,791 1
CAIP01000332 1,782 1
CAIP01000325 1,781 2
CAIP01000215 1,776 1
CAIP01000436 1,766 0
CAIP01000367 1,751 1
CAIP01000354 1,734 2
CAIP01000326 1,728 2
CAIP01000315 1,711 1
CAIP01000289 1,705 1
CAIP01000320 1,690 1
CAIP01000303 1,685 1
CAIP01000381 1,666 0
CAIP01000292 1,661 2
CAIP01000329 1,653 1
CAIP01000271 1,643 2
CAIP01000258 1,642 1
CAIP01000005 1,633 3
CAIP01000395 1,605 2
CAIP01000007 1,602 4
CAIP01000330 1,554 4
CAIP01000285 1,543 1
CAIP01000318 1,539 1
CAIP01000360 1,530 2
CAIP01000317 1,525 1
CAIP01000136 1,509 5
CAIP01000319 1,505 3
CAIP01000265 1,466 2
CAIP01000337 1,442 1
CAIP01000304 1,432 2
CAIP01000308 1,429 2
CAIP01000328 1,374 1
CAIP01000364 1,328 0
CAIP01000348 1,324 0
CAIP01000262 1,303 3
CAIP01000302 1,226 2
CAIP01000273 1,223 1
CAIP01000278 1,205 1
CAIP01000350 1,204 2
CAIP01000266 1,192 0
CAIP01000310 1,176 1
CAIP01000355 1,169 2
CAIP01000300 1,154 0
CAIP01000353 1,104 0
CAIP01000349 1,094 2
CAIP01000342 1,062 3
CAIP01000341 1,037 0
CAIP01000327 1,037 0
CAIP01000283 1,026 0
CAIP01000264 1,016 1
CAIP01000314 969 1
CAIP01000307 951 2
CAIP01000366 947 0
CAIP01000263 927 1
CAIP01000299 927 1
CAIP01000371 920 3
CAIP01000388 917 2
CAIP01000372 907 2
CAIP01000389 894 1
CAIP01000336 893 0
CAIP01000376 888 1
CAIP01000377 877 0
CAIP01000356 866 0
CAIP01000288 866 2
CAIP01000296 858 1
CAIP01000340 845 1
CAIP01000316 835 2
CAIP01000386 816 2
CAIP01000267 813 1
CAIP01000380 803 1
CAIP01000378 795 1
CAIP01000295 784 0
CAIP01000358 776 0
CAIP01000311 772 1
CAIP01000352 749 0
CAIP01000373 747 1
CAIP01000375 744 0
CAIP01000343 738 2
CAIP01000385 712 1
CAIP01000345 708 0
CAIP01000361 706 0
CAIP01000321 697 1
CAIP01000284 689 2
CAIP01000387 689 0
CAIP01000274 687 1
CAIP01000309 684 0
CAIP01000287 683 2
CAIP01000276 671 1
CAIP01000370 669 1
CAIP01000298 667 0
CAIP01000306 661 1
CAIP01000344 659 1
CAIP01000313 652 0
CAIP01000261 651 1
CAIP01000384 642 1
CAIP01000359 635 1
CAIP01000260 634 1
CAIP01000365 619 0
CAIP01000269 618 0
CAIP01000239 614 0
CAIP01000305 601 1
CAIP01000369 594 2
CAIP01000297 591 1
CAIP01000294 574 1
CAIP01000322 569 1
CAIP01000333 567 0
CAIP01000281 567 1
CAIP01000291 564 0
CAIP01000374 564 0
CAIP01000282 561 0
CAIP01000259 556 1
CAIP01000331 555 0
CAIP01000270 555 1
CAIP01000347 548 0
CAIP01000286 543 0
CAIP01000275 532 0
CAIP01000338 516 0
CAIP01000324 514 0
CAIP01000383 504 0
CAIP01000382 503 0
CAIP01000066 459 0
Total 4,693,747 4,488
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000297435.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000297435.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000297435.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000297435.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000297435.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000297435.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000297435.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000297435.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000297435.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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