cyanobase » Prochlorococcus sp. W5

Prochlorococcus sp. W5

Summary

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Data source name GCA_000291985.1
Full name Prochlorococcus sp. W5 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
ALPL01000005 11,787 0
ALPL01000045 8,580 0
ALPL01000017 8,377 0
ALPL01000089 5,521 0
ALPL01000016 5,266 0
ALPL01000057 3,914 0
ALPL01000092 2,558 0
ALPL01000032 2,429 0
ALPL01000025 2,288 0
ALPL01000080 2,234 0
ALPL01000083 2,195 0
ALPL01000085 2,038 0
ALPL01000020 2,004 0
ALPL01000061 1,847 0
ALPL01000050 1,839 0
ALPL01000004 1,662 0
ALPL01000053 1,413 0
ALPL01000079 1,253 0
ALPL01000010 999 0
ALPL01000091 924 0
ALPL01000038 899 0
ALPL01000003 847 0
ALPL01000067 842 0
ALPL01000055 821 0
ALPL01000039 807 0
ALPL01000088 778 0
ALPL01000030 719 0
ALPL01000035 717 0
ALPL01000049 701 0
ALPL01000001 665 0
ALPL01000074 648 0
ALPL01000066 639 0
ALPL01000060 579 0
ALPL01000078 574 0
ALPL01000024 573 0
ALPL01000075 537 0
ALPL01000018 531 0
ALPL01000081 519 0
ALPL01000033 512 0
ALPL01000002 508 0
ALPL01000009 506 0
ALPL01000086 495 0
ALPL01000087 494 0
ALPL01000048 489 0
ALPL01000077 487 0
ALPL01000014 481 0
ALPL01000065 446 0
ALPL01000069 437 0
ALPL01000027 435 0
ALPL01000015 428 0
ALPL01000008 428 0
ALPL01000064 427 0
ALPL01000013 415 0
ALPL01000084 386 0
ALPL01000068 378 0
ALPL01000082 375 0
ALPL01000031 370 0
ALPL01000040 360 0
ALPL01000052 337 0
ALPL01000019 321 0
ALPL01000047 315 0
ALPL01000042 313 0
ALPL01000007 309 0
ALPL01000006 307 0
ALPL01000023 299 0
ALPL01000071 297 0
ALPL01000044 287 0
ALPL01000037 286 0
ALPL01000012 284 0
ALPL01000051 283 0
ALPL01000058 283 0
ALPL01000073 281 0
ALPL01000072 277 0
ALPL01000011 275 0
ALPL01000076 272 0
ALPL01000070 271 0
ALPL01000034 267 0
ALPL01000026 266 0
ALPL01000062 260 0
ALPL01000059 257 0
ALPL01000046 248 0
ALPL01000054 247 0
ALPL01000029 243 0
ALPL01000021 238 0
ALPL01000056 228 0
ALPL01000036 227 0
ALPL01000022 223 0
ALPL01000063 222 0
ALPL01000090 222 0
ALPL01000041 217 0
ALPL01000028 216 0
ALPL01000043 208 0
Total 99,467 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000291985.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000291985.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000291985.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000291985.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000291985.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000291985.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000291985.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000291985.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000291985.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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