cyanobase » Prochlorococcus sp. W12

Prochlorococcus sp. W12

Summary

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Data source name GCA_000291965.1
Full name Prochlorococcus sp. W12 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
ALPJ01000222 27,866 0
ALPJ01000181 17,708 0
ALPJ01000145 15,643 0
ALPJ01000193 13,221 0
ALPJ01000132 12,918 0
ALPJ01000160 12,071 0
ALPJ01000102 9,981 0
ALPJ01000082 9,658 0
ALPJ01000049 9,627 0
ALPJ01000184 8,845 0
ALPJ01000213 8,495 0
ALPJ01000118 7,890 0
ALPJ01000194 6,829 0
ALPJ01000086 6,476 0
ALPJ01000154 5,886 0
ALPJ01000191 5,623 0
ALPJ01000036 5,496 0
ALPJ01000028 5,350 0
ALPJ01000007 4,902 0
ALPJ01000178 4,804 0
ALPJ01000157 4,663 0
ALPJ01000105 4,382 0
ALPJ01000207 4,316 0
ALPJ01000065 4,307 0
ALPJ01000047 4,291 0
ALPJ01000003 4,037 0
ALPJ01000171 3,984 0
ALPJ01000088 3,951 0
ALPJ01000146 3,844 0
ALPJ01000170 3,803 0
ALPJ01000075 3,530 0
ALPJ01000226 3,469 0
ALPJ01000123 3,301 0
ALPJ01000141 3,263 0
ALPJ01000149 3,185 0
ALPJ01000221 3,180 0
ALPJ01000180 3,108 0
ALPJ01000131 2,986 0
ALPJ01000183 2,984 0
ALPJ01000051 2,956 0
ALPJ01000014 2,732 0
ALPJ01000166 2,645 0
ALPJ01000069 2,567 0
ALPJ01000104 2,545 0
ALPJ01000041 2,492 0
ALPJ01000029 2,456 0
ALPJ01000201 2,442 0
ALPJ01000143 2,386 0
ALPJ01000027 2,351 0
ALPJ01000070 2,332 0
ALPJ01000158 2,196 0
ALPJ01000211 2,193 0
ALPJ01000161 2,190 0
ALPJ01000175 2,152 0
ALPJ01000052 2,136 0
ALPJ01000214 1,986 0
ALPJ01000062 1,931 0
ALPJ01000220 1,916 0
ALPJ01000168 1,837 0
ALPJ01000169 1,736 0
ALPJ01000179 1,728 0
ALPJ01000195 1,724 0
ALPJ01000064 1,670 0
ALPJ01000106 1,653 0
ALPJ01000142 1,638 0
ALPJ01000044 1,628 0
ALPJ01000117 1,574 0
ALPJ01000076 1,563 0
ALPJ01000165 1,523 0
ALPJ01000137 1,515 0
ALPJ01000197 1,408 0
ALPJ01000048 1,386 0
ALPJ01000059 1,370 0
ALPJ01000188 1,293 0
ALPJ01000130 1,275 0
ALPJ01000045 1,222 0
ALPJ01000187 1,147 0
ALPJ01000186 1,139 0
ALPJ01000163 1,120 0
ALPJ01000032 1,115 0
ALPJ01000129 1,112 0
ALPJ01000189 1,099 0
ALPJ01000063 1,077 0
ALPJ01000017 985 0
ALPJ01000054 976 0
ALPJ01000173 974 0
ALPJ01000122 968 0
ALPJ01000164 955 0
ALPJ01000212 941 0
ALPJ01000081 936 0
ALPJ01000140 917 0
ALPJ01000190 911 0
ALPJ01000159 910 0
ALPJ01000228 898 0
ALPJ01000085 898 0
ALPJ01000005 896 0
ALPJ01000109 892 0
ALPJ01000121 869 0
ALPJ01000002 864 0
ALPJ01000096 851 0
ALPJ01000230 849 0
ALPJ01000107 834 0
ALPJ01000015 832 0
ALPJ01000084 828 0
ALPJ01000126 823 0
ALPJ01000147 822 0
ALPJ01000016 817 0
ALPJ01000227 811 0
ALPJ01000023 803 0
ALPJ01000192 789 0
ALPJ01000026 751 0
ALPJ01000108 740 0
ALPJ01000203 727 0
ALPJ01000093 696 0
ALPJ01000177 696 0
ALPJ01000152 686 0
ALPJ01000092 679 0
ALPJ01000229 677 0
ALPJ01000053 674 0
ALPJ01000120 666 0
ALPJ01000001 646 0
ALPJ01000019 644 0
ALPJ01000022 643 0
ALPJ01000115 626 0
ALPJ01000148 624 0
ALPJ01000072 621 0
ALPJ01000144 612 0
ALPJ01000198 609 0
ALPJ01000151 576 0
ALPJ01000037 570 0
ALPJ01000008 564 0
ALPJ01000208 562 0
ALPJ01000231 558 0
ALPJ01000119 558 0
ALPJ01000043 555 0
ALPJ01000068 554 0
ALPJ01000006 543 0
ALPJ01000172 543 0
ALPJ01000134 526 0
ALPJ01000078 525 0
ALPJ01000080 515 0
ALPJ01000094 511 0
ALPJ01000199 510 0
ALPJ01000040 502 0
ALPJ01000113 495 0
ALPJ01000127 485 0
ALPJ01000232 483 0
ALPJ01000067 476 0
ALPJ01000218 472 0
ALPJ01000139 471 0
ALPJ01000021 463 0
ALPJ01000079 461 0
ALPJ01000004 459 0
ALPJ01000206 458 0
ALPJ01000060 456 0
ALPJ01000097 452 0
ALPJ01000182 445 0
ALPJ01000074 444 0
ALPJ01000057 425 0
ALPJ01000089 422 0
ALPJ01000101 416 0
ALPJ01000009 414 0
ALPJ01000156 411 0
ALPJ01000111 405 0
ALPJ01000162 399 0
ALPJ01000153 396 0
ALPJ01000012 390 0
ALPJ01000077 388 0
ALPJ01000110 386 0
ALPJ01000103 386 0
ALPJ01000083 385 0
ALPJ01000056 383 0
ALPJ01000087 376 0
ALPJ01000176 358 0
ALPJ01000135 351 0
ALPJ01000034 351 0
ALPJ01000128 343 0
ALPJ01000073 342 0
ALPJ01000055 341 0
ALPJ01000095 341 0
ALPJ01000224 336 0
ALPJ01000018 335 0
ALPJ01000200 334 0
ALPJ01000124 332 0
ALPJ01000042 331 0
ALPJ01000133 326 0
ALPJ01000091 324 0
ALPJ01000196 319 0
ALPJ01000011 318 0
ALPJ01000223 316 0
ALPJ01000020 314 0
ALPJ01000216 312 0
ALPJ01000039 310 0
ALPJ01000010 306 0
ALPJ01000202 287 0
ALPJ01000098 282 0
ALPJ01000013 282 0
ALPJ01000035 281 0
ALPJ01000205 272 0
ALPJ01000066 271 0
ALPJ01000125 271 0
ALPJ01000167 271 0
ALPJ01000031 269 0
ALPJ01000209 269 0
ALPJ01000174 268 0
ALPJ01000185 267 0
ALPJ01000225 263 0
ALPJ01000090 262 0
ALPJ01000155 260 0
ALPJ01000116 259 0
ALPJ01000138 255 0
ALPJ01000204 254 0
ALPJ01000210 252 0
ALPJ01000099 250 0
ALPJ01000136 247 0
ALPJ01000100 246 0
ALPJ01000219 246 0
ALPJ01000112 243 0
ALPJ01000058 241 0
ALPJ01000033 240 0
ALPJ01000050 239 0
ALPJ01000061 234 0
ALPJ01000038 233 0
ALPJ01000215 231 0
ALPJ01000114 220 0
ALPJ01000025 219 0
ALPJ01000150 218 0
ALPJ01000071 210 0
ALPJ01000024 207 0
ALPJ01000030 206 0
ALPJ01000046 203 0
ALPJ01000217 200 0
Total 423,437 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000291965.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000291965.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000291965.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000291965.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000291965.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000291965.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000291965.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000291965.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000291965.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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