cyanobase » Prochlorococcus sp. W11

Prochlorococcus sp. W11

Summary

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Data source name GCA_000291945.1
Full name Prochlorococcus sp. W11 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
ALPI01000066 60,189 0
ALPI01000007 54,722 0
ALPI01000133 49,772 0
ALPI01000072 35,895 0
ALPI01000130 27,619 0
ALPI01000123 26,166 0
ALPI01000034 23,552 0
ALPI01000063 22,992 0
ALPI01000110 22,926 0
ALPI01000019 22,755 0
ALPI01000006 22,639 0
ALPI01000145 20,326 0
ALPI01000115 18,687 0
ALPI01000080 16,697 0
ALPI01000005 15,028 0
ALPI01000094 14,489 0
ALPI01000048 14,396 0
ALPI01000122 13,104 0
ALPI01000140 12,651 0
ALPI01000134 12,275 0
ALPI01000116 12,207 0
ALPI01000156 11,806 0
ALPI01000135 11,777 0
ALPI01000025 11,118 0
ALPI01000018 9,271 0
ALPI01000144 7,693 0
ALPI01000051 7,603 0
ALPI01000039 6,923 0
ALPI01000040 6,582 0
ALPI01000158 6,322 0
ALPI01000064 5,563 0
ALPI01000037 5,340 0
ALPI01000032 5,337 0
ALPI01000113 5,278 0
ALPI01000055 4,949 0
ALPI01000102 4,935 0
ALPI01000009 4,918 0
ALPI01000085 4,722 0
ALPI01000129 4,235 0
ALPI01000152 4,186 0
ALPI01000003 3,800 0
ALPI01000035 3,438 0
ALPI01000004 3,372 0
ALPI01000099 3,270 0
ALPI01000151 2,982 0
ALPI01000126 2,953 0
ALPI01000105 2,934 0
ALPI01000157 2,702 0
ALPI01000083 2,663 0
ALPI01000078 2,610 0
ALPI01000017 2,600 0
ALPI01000150 2,564 0
ALPI01000096 2,435 0
ALPI01000043 2,378 0
ALPI01000028 2,299 0
ALPI01000084 2,263 0
ALPI01000074 2,246 0
ALPI01000031 2,235 0
ALPI01000049 2,225 0
ALPI01000142 2,166 0
ALPI01000010 2,144 0
ALPI01000045 2,074 0
ALPI01000058 1,973 0
ALPI01000068 1,932 0
ALPI01000097 1,772 0
ALPI01000119 1,771 0
ALPI01000021 1,572 0
ALPI01000128 1,557 0
ALPI01000082 1,520 0
ALPI01000016 1,495 0
ALPI01000044 1,410 0
ALPI01000121 1,407 0
ALPI01000091 1,374 0
ALPI01000065 1,271 0
ALPI01000086 1,239 0
ALPI01000027 1,068 0
ALPI01000002 1,050 0
ALPI01000011 1,037 0
ALPI01000047 992 0
ALPI01000013 978 0
ALPI01000067 972 0
ALPI01000095 905 0
ALPI01000137 833 0
ALPI01000111 816 0
ALPI01000087 811 0
ALPI01000114 783 0
ALPI01000107 754 0
ALPI01000030 736 0
ALPI01000069 724 0
ALPI01000042 714 0
ALPI01000118 695 0
ALPI01000077 666 0
ALPI01000052 661 0
ALPI01000139 659 0
ALPI01000146 646 0
ALPI01000138 639 0
ALPI01000093 618 0
ALPI01000088 597 0
ALPI01000008 576 0
ALPI01000100 572 0
ALPI01000103 553 0
ALPI01000109 552 0
ALPI01000104 533 0
ALPI01000149 517 0
ALPI01000131 516 0
ALPI01000090 514 0
ALPI01000132 511 0
ALPI01000061 509 0
ALPI01000120 509 0
ALPI01000124 486 0
ALPI01000038 482 0
ALPI01000127 461 0
ALPI01000062 442 0
ALPI01000073 426 0
ALPI01000014 415 0
ALPI01000079 410 0
ALPI01000108 403 0
ALPI01000070 402 0
ALPI01000029 392 0
ALPI01000098 391 0
ALPI01000033 380 0
ALPI01000054 378 0
ALPI01000053 362 0
ALPI01000101 361 0
ALPI01000036 357 0
ALPI01000060 356 0
ALPI01000076 353 0
ALPI01000050 345 0
ALPI01000125 344 0
ALPI01000148 341 0
ALPI01000023 329 0
ALPI01000046 327 0
ALPI01000012 316 0
ALPI01000020 316 0
ALPI01000015 315 0
ALPI01000026 313 0
ALPI01000106 313 0
ALPI01000001 313 0
ALPI01000059 312 0
ALPI01000155 312 0
ALPI01000041 311 0
ALPI01000089 293 0
ALPI01000112 292 0
ALPI01000136 287 0
ALPI01000143 284 0
ALPI01000071 282 0
ALPI01000081 278 0
ALPI01000153 275 0
ALPI01000057 268 0
ALPI01000154 265 0
ALPI01000092 264 0
ALPI01000056 264 0
ALPI01000024 262 0
ALPI01000147 258 0
ALPI01000022 251 0
ALPI01000141 250 0
ALPI01000075 244 0
ALPI01000117 241 0
Total 766,829 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000291945.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000291945.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000291945.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000291945.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000291945.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000291945.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000291945.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000291945.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000291945.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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