cyanobase » Prochlorococcus sp. W9

Prochlorococcus sp. W9

Summary

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Data source name GCA_000291925.1
Full name Prochlorococcus sp. W9 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
ALPG01000108 17,912 0
ALPG01000150 15,750 0
ALPG01000180 14,073 0
ALPG01000090 11,170 0
ALPG01000035 11,103 0
ALPG01000051 10,477 0
ALPG01000193 9,932 0
ALPG01000117 9,511 0
ALPG01000141 7,877 0
ALPG01000013 7,782 0
ALPG01000115 7,702 0
ALPG01000032 7,132 0
ALPG01000093 6,877 0
ALPG01000175 6,465 0
ALPG01000083 6,457 0
ALPG01000053 6,318 0
ALPG01000177 6,252 0
ALPG01000034 5,997 0
ALPG01000063 5,978 0
ALPG01000081 5,668 0
ALPG01000011 5,565 0
ALPG01000138 5,373 0
ALPG01000163 4,778 0
ALPG01000176 4,720 0
ALPG01000134 4,706 0
ALPG01000206 4,537 0
ALPG01000096 4,485 0
ALPG01000078 4,333 0
ALPG01000123 4,233 0
ALPG01000140 4,183 0
ALPG01000164 4,132 0
ALPG01000113 4,021 0
ALPG01000097 3,948 0
ALPG01000054 3,919 0
ALPG01000116 3,743 0
ALPG01000027 3,720 0
ALPG01000132 3,655 0
ALPG01000030 3,614 0
ALPG01000191 3,572 0
ALPG01000126 3,567 0
ALPG01000031 3,177 0
ALPG01000059 3,154 0
ALPG01000114 3,055 0
ALPG01000094 2,995 0
ALPG01000110 2,910 0
ALPG01000091 2,867 0
ALPG01000159 2,762 0
ALPG01000127 2,503 0
ALPG01000040 2,379 0
ALPG01000042 2,289 0
ALPG01000003 2,280 0
ALPG01000055 2,201 0
ALPG01000174 2,200 0
ALPG01000131 2,159 0
ALPG01000071 2,159 0
ALPG01000144 2,156 0
ALPG01000172 2,124 0
ALPG01000036 2,063 0
ALPG01000099 2,050 0
ALPG01000119 2,038 0
ALPG01000201 1,893 0
ALPG01000076 1,891 0
ALPG01000047 1,885 0
ALPG01000010 1,852 0
ALPG01000109 1,775 0
ALPG01000169 1,663 0
ALPG01000135 1,612 0
ALPG01000088 1,503 0
ALPG01000023 1,498 0
ALPG01000079 1,451 0
ALPG01000068 1,421 0
ALPG01000004 1,387 0
ALPG01000211 1,348 0
ALPG01000118 1,338 0
ALPG01000103 1,334 0
ALPG01000185 1,309 0
ALPG01000105 1,307 0
ALPG01000039 1,291 0
ALPG01000207 1,252 0
ALPG01000057 1,245 0
ALPG01000033 1,232 0
ALPG01000156 1,212 0
ALPG01000188 1,209 0
ALPG01000095 1,194 0
ALPG01000022 1,181 0
ALPG01000170 1,169 0
ALPG01000173 1,160 0
ALPG01000002 1,156 0
ALPG01000072 1,134 0
ALPG01000122 1,119 0
ALPG01000130 1,078 0
ALPG01000136 1,075 0
ALPG01000154 1,058 0
ALPG01000179 1,028 0
ALPG01000046 1,027 0
ALPG01000184 998 0
ALPG01000050 994 0
ALPG01000202 967 0
ALPG01000145 939 0
ALPG01000019 927 0
ALPG01000100 881 0
ALPG01000165 866 0
ALPG01000058 852 0
ALPG01000045 838 0
ALPG01000001 831 0
ALPG01000155 811 0
ALPG01000194 790 0
ALPG01000006 775 0
ALPG01000069 761 0
ALPG01000037 754 0
ALPG01000157 746 0
ALPG01000064 744 0
ALPG01000077 736 0
ALPG01000192 731 0
ALPG01000143 730 0
ALPG01000120 721 0
ALPG01000086 690 0
ALPG01000056 680 0
ALPG01000198 677 0
ALPG01000021 675 0
ALPG01000015 658 0
ALPG01000028 653 0
ALPG01000107 646 0
ALPG01000204 631 0
ALPG01000024 630 0
ALPG01000089 630 0
ALPG01000111 626 0
ALPG01000106 618 0
ALPG01000075 611 0
ALPG01000005 603 0
ALPG01000044 601 0
ALPG01000183 592 0
ALPG01000139 590 0
ALPG01000199 580 0
ALPG01000009 576 0
ALPG01000152 576 0
ALPG01000060 561 0
ALPG01000020 541 0
ALPG01000017 539 0
ALPG01000160 536 0
ALPG01000065 534 0
ALPG01000208 525 0
ALPG01000038 519 0
ALPG01000018 512 0
ALPG01000182 510 0
ALPG01000082 498 0
ALPG01000080 494 0
ALPG01000190 491 0
ALPG01000149 479 0
ALPG01000112 467 0
ALPG01000166 466 0
ALPG01000087 465 0
ALPG01000133 462 0
ALPG01000061 459 0
ALPG01000203 454 0
ALPG01000102 452 0
ALPG01000007 449 0
ALPG01000197 441 0
ALPG01000025 438 0
ALPG01000142 424 0
ALPG01000196 418 0
ALPG01000200 418 0
ALPG01000049 416 0
ALPG01000146 411 0
ALPG01000084 411 0
ALPG01000062 406 0
ALPG01000158 403 0
ALPG01000101 399 0
ALPG01000171 397 0
ALPG01000016 390 0
ALPG01000098 389 0
ALPG01000073 381 0
ALPG01000128 380 0
ALPG01000161 362 0
ALPG01000124 359 0
ALPG01000092 358 0
ALPG01000147 355 0
ALPG01000070 350 0
ALPG01000195 348 0
ALPG01000043 343 0
ALPG01000125 339 0
ALPG01000148 336 0
ALPG01000041 332 0
ALPG01000210 326 0
ALPG01000085 322 0
ALPG01000074 314 0
ALPG01000052 313 0
ALPG01000186 313 0
ALPG01000008 305 0
ALPG01000121 302 0
ALPG01000026 302 0
ALPG01000181 301 0
ALPG01000048 297 0
ALPG01000012 291 0
ALPG01000153 288 0
ALPG01000187 286 0
ALPG01000162 279 0
ALPG01000189 278 0
ALPG01000205 278 0
ALPG01000029 276 0
ALPG01000104 276 0
ALPG01000151 263 0
ALPG01000137 261 0
ALPG01000129 255 0
ALPG01000014 254 0
ALPG01000067 254 0
ALPG01000209 252 0
ALPG01000167 228 0
ALPG01000178 221 0
ALPG01000168 210 0
ALPG01000066 208 0
Total 420,150 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000291925.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000291925.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000291925.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000291925.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000291925.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000291925.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000291925.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000291925.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000291925.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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