cyanobase » Prochlorococcus sp. W3

Prochlorococcus sp. W3

Summary

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Data source name GCA_000291905.1
Full name Prochlorococcus sp. W3 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
ALPC01000122 25,632 0
ALPC01000017 20,651 0
ALPC01000082 17,304 0
ALPC01000175 17,253 0
ALPC01000046 15,948 0
ALPC01000103 15,104 0
ALPC01000104 13,761 0
ALPC01000196 11,944 0
ALPC01000068 11,836 0
ALPC01000036 9,578 0
ALPC01000126 7,288 0
ALPC01000129 7,273 0
ALPC01000184 6,153 0
ALPC01000088 5,782 0
ALPC01000147 5,591 0
ALPC01000064 5,566 0
ALPC01000100 5,187 0
ALPC01000114 4,620 0
ALPC01000080 4,279 0
ALPC01000005 3,679 0
ALPC01000192 3,198 0
ALPC01000128 2,969 0
ALPC01000152 2,766 0
ALPC01000024 2,739 0
ALPC01000003 2,727 0
ALPC01000022 2,647 0
ALPC01000125 2,644 0
ALPC01000039 2,590 0
ALPC01000117 2,268 0
ALPC01000015 2,255 0
ALPC01000194 1,887 0
ALPC01000137 1,845 0
ALPC01000063 1,702 0
ALPC01000093 1,665 0
ALPC01000070 1,657 0
ALPC01000144 1,611 0
ALPC01000074 1,551 0
ALPC01000095 1,540 0
ALPC01000181 1,538 0
ALPC01000013 1,502 0
ALPC01000167 1,462 0
ALPC01000069 1,451 0
ALPC01000087 1,439 0
ALPC01000146 1,424 0
ALPC01000048 1,408 0
ALPC01000098 1,360 0
ALPC01000188 1,343 0
ALPC01000041 1,176 0
ALPC01000078 1,091 0
ALPC01000010 1,091 0
ALPC01000189 1,054 0
ALPC01000120 1,031 0
ALPC01000151 967 0
ALPC01000027 960 0
ALPC01000179 957 0
ALPC01000131 945 0
ALPC01000118 889 0
ALPC01000009 884 0
ALPC01000097 874 0
ALPC01000075 869 0
ALPC01000007 860 0
ALPC01000136 854 0
ALPC01000049 764 0
ALPC01000174 746 0
ALPC01000065 739 0
ALPC01000157 736 0
ALPC01000143 724 0
ALPC01000056 713 0
ALPC01000031 707 0
ALPC01000102 707 0
ALPC01000191 705 0
ALPC01000066 703 0
ALPC01000034 702 0
ALPC01000116 693 0
ALPC01000172 683 0
ALPC01000060 676 0
ALPC01000021 671 0
ALPC01000096 661 0
ALPC01000123 661 0
ALPC01000006 657 0
ALPC01000111 654 0
ALPC01000043 651 0
ALPC01000183 645 0
ALPC01000186 623 0
ALPC01000030 622 0
ALPC01000094 618 0
ALPC01000169 609 0
ALPC01000044 593 0
ALPC01000107 586 0
ALPC01000052 585 0
ALPC01000042 583 0
ALPC01000037 583 0
ALPC01000119 580 0
ALPC01000156 577 0
ALPC01000089 571 0
ALPC01000057 565 0
ALPC01000108 565 0
ALPC01000195 562 0
ALPC01000076 561 0
ALPC01000197 548 0
ALPC01000002 545 0
ALPC01000018 544 0
ALPC01000058 536 0
ALPC01000071 515 0
ALPC01000121 513 0
ALPC01000014 499 0
ALPC01000025 498 0
ALPC01000047 496 0
ALPC01000029 485 0
ALPC01000148 464 0
ALPC01000138 463 0
ALPC01000079 462 0
ALPC01000019 455 0
ALPC01000083 451 0
ALPC01000077 446 0
ALPC01000140 446 0
ALPC01000132 436 0
ALPC01000158 433 0
ALPC01000061 416 0
ALPC01000153 414 0
ALPC01000150 407 0
ALPC01000130 407 0
ALPC01000054 402 0
ALPC01000062 395 0
ALPC01000133 394 0
ALPC01000038 392 0
ALPC01000059 389 0
ALPC01000113 382 0
ALPC01000106 381 0
ALPC01000011 380 0
ALPC01000004 376 0
ALPC01000145 372 0
ALPC01000040 366 0
ALPC01000101 364 0
ALPC01000163 361 0
ALPC01000016 356 0
ALPC01000142 350 0
ALPC01000139 349 0
ALPC01000115 347 0
ALPC01000045 346 0
ALPC01000168 344 0
ALPC01000127 340 0
ALPC01000090 339 0
ALPC01000187 338 0
ALPC01000085 324 0
ALPC01000055 323 0
ALPC01000099 323 0
ALPC01000086 321 0
ALPC01000092 317 0
ALPC01000072 311 0
ALPC01000180 310 0
ALPC01000035 308 0
ALPC01000028 306 0
ALPC01000161 304 0
ALPC01000084 304 0
ALPC01000166 300 0
ALPC01000091 299 0
ALPC01000164 298 0
ALPC01000185 295 0
ALPC01000165 293 0
ALPC01000155 286 0
ALPC01000033 285 0
ALPC01000193 282 0
ALPC01000182 280 0
ALPC01000178 276 0
ALPC01000154 275 0
ALPC01000067 272 0
ALPC01000109 270 0
ALPC01000171 265 0
ALPC01000053 264 0
ALPC01000001 262 0
ALPC01000073 262 0
ALPC01000051 261 0
ALPC01000170 260 0
ALPC01000023 257 0
ALPC01000159 250 0
ALPC01000149 250 0
ALPC01000135 248 0
ALPC01000026 247 0
ALPC01000105 244 0
ALPC01000081 241 0
ALPC01000112 238 0
ALPC01000177 236 0
ALPC01000050 236 0
ALPC01000173 236 0
ALPC01000162 231 0
ALPC01000134 230 0
ALPC01000124 227 0
ALPC01000012 224 0
ALPC01000141 221 0
ALPC01000008 214 0
ALPC01000020 210 0
ALPC01000032 210 0
ALPC01000110 208 0
ALPC01000176 206 0
ALPC01000190 202 0
ALPC01000160 201 0
Total 339,045 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000291905.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000291905.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000291905.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000291905.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000291905.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000291905.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000291905.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000291905.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000291905.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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