cyanobase » Prochlorococcus sp. W2

Prochlorococcus sp. W2

Summary

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Data source name GCA_000291885.1
Full name Prochlorococcus sp. W2 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
ALPB01000042 127,061 0
ALPB01000104 122,790 0
ALPB01000074 105,702 0
ALPB01000092 69,075 0
ALPB01000033 60,564 0
ALPB01000087 50,910 0
ALPB01000023 50,272 0
ALPB01000088 50,177 0
ALPB01000055 44,586 0
ALPB01000040 44,327 0
ALPB01000077 41,706 0
ALPB01000071 41,567 0
ALPB01000028 35,253 0
ALPB01000022 28,903 0
ALPB01000080 27,352 0
ALPB01000063 26,862 0
ALPB01000010 26,175 0
ALPB01000045 23,130 0
ALPB01000002 22,883 0
ALPB01000039 19,561 0
ALPB01000037 14,577 0
ALPB01000012 12,203 0
ALPB01000007 11,833 0
ALPB01000061 10,394 0
ALPB01000035 9,078 0
ALPB01000106 7,354 0
ALPB01000050 7,097 0
ALPB01000004 6,765 0
ALPB01000016 6,613 0
ALPB01000089 5,797 0
ALPB01000044 5,372 0
ALPB01000103 5,028 0
ALPB01000084 4,901 0
ALPB01000108 4,846 0
ALPB01000081 4,819 0
ALPB01000048 4,680 0
ALPB01000098 4,645 0
ALPB01000086 4,538 0
ALPB01000015 4,433 0
ALPB01000068 4,339 0
ALPB01000095 4,156 0
ALPB01000062 4,132 0
ALPB01000018 3,754 0
ALPB01000006 3,645 0
ALPB01000009 3,585 0
ALPB01000046 3,458 0
ALPB01000008 3,209 0
ALPB01000083 2,912 0
ALPB01000067 2,820 0
ALPB01000049 2,776 0
ALPB01000065 2,752 0
ALPB01000059 2,528 0
ALPB01000056 2,485 0
ALPB01000003 2,433 0
ALPB01000024 2,406 0
ALPB01000060 2,406 0
ALPB01000079 2,375 0
ALPB01000082 2,348 0
ALPB01000105 2,288 0
ALPB01000075 2,128 0
ALPB01000057 2,113 0
ALPB01000073 2,074 0
ALPB01000066 1,994 0
ALPB01000013 1,896 0
ALPB01000030 1,893 0
ALPB01000025 1,878 0
ALPB01000036 1,850 0
ALPB01000026 1,835 0
ALPB01000078 1,713 0
ALPB01000064 1,648 0
ALPB01000029 1,588 0
ALPB01000096 1,539 0
ALPB01000032 1,514 0
ALPB01000099 1,491 0
ALPB01000091 1,313 0
ALPB01000053 1,277 0
ALPB01000093 1,259 0
ALPB01000043 1,248 0
ALPB01000001 1,230 0
ALPB01000102 1,151 0
ALPB01000100 1,150 0
ALPB01000047 1,048 0
ALPB01000054 1,019 0
ALPB01000019 992 0
ALPB01000101 983 0
ALPB01000041 955 0
ALPB01000107 946 0
ALPB01000090 935 0
ALPB01000038 754 0
ALPB01000069 736 0
ALPB01000076 707 0
ALPB01000020 622 0
ALPB01000052 596 0
ALPB01000094 549 0
ALPB01000097 543 0
ALPB01000017 508 0
ALPB01000027 473 0
ALPB01000021 466 0
ALPB01000014 462 0
ALPB01000058 413 0
ALPB01000005 374 0
ALPB01000085 362 0
ALPB01000072 362 0
ALPB01000051 348 0
ALPB01000070 335 0
ALPB01000034 327 0
ALPB01000011 312 0
ALPB01000031 222 0
Total 1,266,767 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000291885.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000291885.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000291885.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000291885.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000291885.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000291885.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000291885.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000291885.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000291885.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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