cyanobase » Prochlorococcus sp. W6

Prochlorococcus sp. W6

Summary

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Data source name GCA_000291865.1
Full name Prochlorococcus sp. W6 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
ALPK01000275 27,111 0
ALPK01000039 24,347 0
ALPK01000028 20,425 0
ALPK01000174 16,180 0
ALPK01000270 15,812 0
ALPK01000180 13,327 0
ALPK01000068 12,303 0
ALPK01000280 12,223 0
ALPK01000121 12,125 0
ALPK01000109 10,314 0
ALPK01000150 8,530 0
ALPK01000074 5,809 0
ALPK01000281 5,565 0
ALPK01000319 5,303 0
ALPK01000255 5,208 0
ALPK01000003 4,636 0
ALPK01000142 4,535 0
ALPK01000050 4,344 0
ALPK01000272 4,262 0
ALPK01000007 3,363 0
ALPK01000018 2,953 0
ALPK01000205 2,907 0
ALPK01000235 2,374 0
ALPK01000266 2,044 0
ALPK01000310 1,972 0
ALPK01000081 1,805 0
ALPK01000158 1,773 0
ALPK01000240 1,701 0
ALPK01000193 1,683 0
ALPK01000178 1,659 0
ALPK01000337 1,632 0
ALPK01000130 1,600 0
ALPK01000075 1,435 0
ALPK01000271 1,430 0
ALPK01000083 1,413 0
ALPK01000234 1,359 0
ALPK01000147 1,355 0
ALPK01000256 1,340 0
ALPK01000334 1,330 0
ALPK01000069 1,291 0
ALPK01000049 1,285 0
ALPK01000198 1,276 0
ALPK01000004 1,245 0
ALPK01000117 1,190 0
ALPK01000172 1,181 0
ALPK01000335 1,126 0
ALPK01000135 1,121 0
ALPK01000248 1,092 0
ALPK01000304 1,058 0
ALPK01000129 1,052 0
ALPK01000066 995 0
ALPK01000239 993 0
ALPK01000251 976 0
ALPK01000017 966 0
ALPK01000125 951 0
ALPK01000005 950 0
ALPK01000048 935 0
ALPK01000045 902 0
ALPK01000203 886 0
ALPK01000233 860 0
ALPK01000167 860 0
ALPK01000291 854 0
ALPK01000185 849 0
ALPK01000188 829 0
ALPK01000269 823 0
ALPK01000163 822 0
ALPK01000258 815 0
ALPK01000038 807 0
ALPK01000090 805 0
ALPK01000170 802 0
ALPK01000152 801 0
ALPK01000116 798 0
ALPK01000224 789 0
ALPK01000169 776 0
ALPK01000104 764 0
ALPK01000212 762 0
ALPK01000006 756 0
ALPK01000254 747 0
ALPK01000308 747 0
ALPK01000284 742 0
ALPK01000035 739 0
ALPK01000010 729 0
ALPK01000132 729 0
ALPK01000072 718 0
ALPK01000086 714 0
ALPK01000329 712 0
ALPK01000287 705 0
ALPK01000289 705 0
ALPK01000073 704 0
ALPK01000236 704 0
ALPK01000034 685 0
ALPK01000250 676 0
ALPK01000279 665 0
ALPK01000037 662 0
ALPK01000031 652 0
ALPK01000263 650 0
ALPK01000019 641 0
ALPK01000327 641 0
ALPK01000062 634 0
ALPK01000033 619 0
ALPK01000085 612 0
ALPK01000159 608 0
ALPK01000259 597 0
ALPK01000077 589 0
ALPK01000157 588 0
ALPK01000148 581 0
ALPK01000290 577 0
ALPK01000155 575 0
ALPK01000094 572 0
ALPK01000213 558 0
ALPK01000181 554 0
ALPK01000229 545 0
ALPK01000249 543 0
ALPK01000097 537 0
ALPK01000171 531 0
ALPK01000195 527 0
ALPK01000186 525 0
ALPK01000053 524 0
ALPK01000265 521 0
ALPK01000282 521 0
ALPK01000136 521 0
ALPK01000059 520 0
ALPK01000332 519 0
ALPK01000016 515 0
ALPK01000067 512 0
ALPK01000245 508 0
ALPK01000211 505 0
ALPK01000311 504 0
ALPK01000225 502 0
ALPK01000146 499 0
ALPK01000306 498 0
ALPK01000080 490 0
ALPK01000338 489 0
ALPK01000084 488 0
ALPK01000246 488 0
ALPK01000165 485 0
ALPK01000190 479 0
ALPK01000043 479 0
ALPK01000214 479 0
ALPK01000153 477 0
ALPK01000262 469 0
ALPK01000218 461 0
ALPK01000106 459 0
ALPK01000024 459 0
ALPK01000099 459 0
ALPK01000166 457 0
ALPK01000230 454 0
ALPK01000209 450 0
ALPK01000088 446 0
ALPK01000317 439 0
ALPK01000231 436 0
ALPK01000200 431 0
ALPK01000126 430 0
ALPK01000131 430 0
ALPK01000217 429 0
ALPK01000056 425 0
ALPK01000012 423 0
ALPK01000138 422 0
ALPK01000022 417 0
ALPK01000029 415 0
ALPK01000331 408 0
ALPK01000082 399 0
ALPK01000162 392 0
ALPK01000095 392 0
ALPK01000222 391 0
ALPK01000063 391 0
ALPK01000252 389 0
ALPK01000058 383 0
ALPK01000111 383 0
ALPK01000241 379 0
ALPK01000008 378 0
ALPK01000276 378 0
ALPK01000303 376 0
ALPK01000149 374 0
ALPK01000023 373 0
ALPK01000113 372 0
ALPK01000314 371 0
ALPK01000192 371 0
ALPK01000021 370 0
ALPK01000201 370 0
ALPK01000173 367 0
ALPK01000253 367 0
ALPK01000122 362 0
ALPK01000321 362 0
ALPK01000139 361 0
ALPK01000242 357 0
ALPK01000118 355 0
ALPK01000060 355 0
ALPK01000042 355 0
ALPK01000044 354 0
ALPK01000221 352 0
ALPK01000296 348 0
ALPK01000087 345 0
ALPK01000207 344 0
ALPK01000197 344 0
ALPK01000001 343 0
ALPK01000298 342 0
ALPK01000143 342 0
ALPK01000336 341 0
ALPK01000260 341 0
ALPK01000189 338 0
ALPK01000301 338 0
ALPK01000100 337 0
ALPK01000182 336 0
ALPK01000054 335 0
ALPK01000313 333 0
ALPK01000027 333 0
ALPK01000032 332 0
ALPK01000295 330 0
ALPK01000061 330 0
ALPK01000057 330 0
ALPK01000283 326 0
ALPK01000096 323 0
ALPK01000324 322 0
ALPK01000196 322 0
ALPK01000101 320 0
ALPK01000223 319 0
ALPK01000293 315 0
ALPK01000089 315 0
ALPK01000103 315 0
ALPK01000107 314 0
ALPK01000243 313 0
ALPK01000026 313 0
ALPK01000309 313 0
ALPK01000244 312 0
ALPK01000206 312 0
ALPK01000025 312 0
ALPK01000011 312 0
ALPK01000168 311 0
ALPK01000112 310 0
ALPK01000098 310 0
ALPK01000237 310 0
ALPK01000030 310 0
ALPK01000286 309 0
ALPK01000285 308 0
ALPK01000064 307 0
ALPK01000238 307 0
ALPK01000226 305 0
ALPK01000047 304 0
ALPK01000076 304 0
ALPK01000307 304 0
ALPK01000055 303 0
ALPK01000302 303 0
ALPK01000191 302 0
ALPK01000128 301 0
ALPK01000316 300 0
ALPK01000141 300 0
ALPK01000232 299 0
ALPK01000164 299 0
ALPK01000065 298 0
ALPK01000009 296 0
ALPK01000176 296 0
ALPK01000108 296 0
ALPK01000161 295 0
ALPK01000322 294 0
ALPK01000177 293 0
ALPK01000330 293 0
ALPK01000305 293 0
ALPK01000105 293 0
ALPK01000312 292 0
ALPK01000268 292 0
ALPK01000140 292 0
ALPK01000015 292 0
ALPK01000297 288 0
ALPK01000267 287 0
ALPK01000294 286 0
ALPK01000133 286 0
ALPK01000278 286 0
ALPK01000092 284 0
ALPK01000154 284 0
ALPK01000144 284 0
ALPK01000115 283 0
ALPK01000328 283 0
ALPK01000220 283 0
ALPK01000261 282 0
ALPK01000320 282 0
ALPK01000137 281 0
ALPK01000127 281 0
ALPK01000120 281 0
ALPK01000114 280 0
ALPK01000300 278 0
ALPK01000202 277 0
ALPK01000208 277 0
ALPK01000091 276 0
ALPK01000160 276 0
ALPK01000175 276 0
ALPK01000318 276 0
ALPK01000247 275 0
ALPK01000124 275 0
ALPK01000179 274 0
ALPK01000257 273 0
ALPK01000013 272 0
ALPK01000277 271 0
ALPK01000071 270 0
ALPK01000079 270 0
ALPK01000204 270 0
ALPK01000216 268 0
ALPK01000323 267 0
ALPK01000326 267 0
ALPK01000210 267 0
ALPK01000184 266 0
ALPK01000187 266 0
ALPK01000215 266 0
ALPK01000228 265 0
ALPK01000219 264 0
ALPK01000134 263 0
ALPK01000151 262 0
ALPK01000078 261 0
ALPK01000274 258 0
ALPK01000199 258 0
ALPK01000123 258 0
ALPK01000002 257 0
ALPK01000273 257 0
ALPK01000227 257 0
ALPK01000264 257 0
ALPK01000315 256 0
ALPK01000040 254 0
ALPK01000292 253 0
ALPK01000102 252 0
ALPK01000119 251 0
ALPK01000093 250 0
ALPK01000194 250 0
ALPK01000145 248 0
ALPK01000156 248 0
ALPK01000070 247 0
ALPK01000051 247 0
ALPK01000325 246 0
ALPK01000046 240 0
ALPK01000183 240 0
ALPK01000110 239 0
ALPK01000041 236 0
ALPK01000299 233 0
ALPK01000052 223 0
ALPK01000014 218 0
ALPK01000288 218 0
ALPK01000036 214 0
ALPK01000333 202 0
ALPK01000020 200 0
Total 385,307 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000291865.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000291865.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000291865.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000291865.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000291865.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000291865.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000291865.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000291865.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000291865.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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