cyanobase » Prochlorococcus sp. W10

Prochlorococcus sp. W10

Summary

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Data source name GCA_000291845.1
Full name Prochlorococcus sp. W10 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
ALPH01000237 22,676 0
ALPH01000328 14,860 0
ALPH01000293 13,925 0
ALPH01000256 11,128 0
ALPH01000317 11,097 0
ALPH01000219 11,055 0
ALPH01000272 8,564 0
ALPH01000171 8,374 0
ALPH01000265 8,341 0
ALPH01000188 8,279 0
ALPH01000132 8,242 0
ALPH01000142 6,843 0
ALPH01000054 6,792 0
ALPH01000249 6,362 0
ALPH01000107 6,353 0
ALPH01000070 6,061 0
ALPH01000184 6,035 0
ALPH01000071 5,834 0
ALPH01000100 5,709 0
ALPH01000137 5,679 0
ALPH01000095 5,652 0
ALPH01000048 5,647 0
ALPH01000006 5,553 0
ALPH01000017 5,510 0
ALPH01000324 5,470 0
ALPH01000326 5,418 0
ALPH01000259 5,316 0
ALPH01000058 5,194 0
ALPH01000050 5,135 0
ALPH01000257 5,013 0
ALPH01000154 4,991 0
ALPH01000299 4,874 0
ALPH01000097 4,835 0
ALPH01000039 4,530 0
ALPH01000125 4,512 0
ALPH01000146 4,409 0
ALPH01000244 4,012 0
ALPH01000304 3,927 0
ALPH01000083 3,691 0
ALPH01000037 3,639 0
ALPH01000021 3,513 0
ALPH01000063 3,476 0
ALPH01000303 3,322 0
ALPH01000127 3,319 0
ALPH01000247 3,299 0
ALPH01000250 3,295 0
ALPH01000205 3,082 0
ALPH01000040 3,071 0
ALPH01000126 3,033 0
ALPH01000331 3,021 0
ALPH01000201 2,925 0
ALPH01000214 2,873 0
ALPH01000346 2,866 0
ALPH01000014 2,824 0
ALPH01000349 2,822 0
ALPH01000295 2,788 0
ALPH01000248 2,677 0
ALPH01000301 2,640 0
ALPH01000092 2,599 0
ALPH01000196 2,512 0
ALPH01000241 2,449 0
ALPH01000185 2,392 0
ALPH01000151 2,374 0
ALPH01000033 2,206 0
ALPH01000032 2,184 0
ALPH01000217 2,146 0
ALPH01000164 2,142 0
ALPH01000186 2,141 0
ALPH01000149 2,141 0
ALPH01000267 2,093 0
ALPH01000108 2,079 0
ALPH01000135 2,057 0
ALPH01000340 2,009 0
ALPH01000055 1,993 0
ALPH01000279 1,987 0
ALPH01000200 1,928 0
ALPH01000001 1,918 0
ALPH01000036 1,912 0
ALPH01000172 1,885 0
ALPH01000013 1,875 0
ALPH01000276 1,837 0
ALPH01000260 1,831 0
ALPH01000026 1,788 0
ALPH01000182 1,702 0
ALPH01000310 1,700 0
ALPH01000023 1,663 0
ALPH01000315 1,659 0
ALPH01000068 1,640 0
ALPH01000075 1,629 0
ALPH01000124 1,622 0
ALPH01000093 1,619 0
ALPH01000120 1,585 0
ALPH01000195 1,515 0
ALPH01000292 1,476 0
ALPH01000049 1,465 0
ALPH01000004 1,453 0
ALPH01000110 1,431 0
ALPH01000152 1,424 0
ALPH01000343 1,414 0
ALPH01000294 1,385 0
ALPH01000236 1,381 0
ALPH01000121 1,362 0
ALPH01000306 1,359 0
ALPH01000169 1,325 0
ALPH01000087 1,314 0
ALPH01000230 1,295 0
ALPH01000131 1,288 0
ALPH01000060 1,280 0
ALPH01000028 1,274 0
ALPH01000338 1,213 0
ALPH01000123 1,197 0
ALPH01000286 1,183 0
ALPH01000115 1,177 0
ALPH01000225 1,165 0
ALPH01000104 1,155 0
ALPH01000117 1,141 0
ALPH01000044 1,140 0
ALPH01000341 1,123 0
ALPH01000190 1,106 0
ALPH01000041 1,101 0
ALPH01000007 1,096 0
ALPH01000347 1,091 0
ALPH01000052 1,081 0
ALPH01000159 1,061 0
ALPH01000204 1,056 0
ALPH01000268 1,049 0
ALPH01000113 1,033 0
ALPH01000010 1,030 0
ALPH01000009 1,020 0
ALPH01000163 1,003 0
ALPH01000283 997 0
ALPH01000157 995 0
ALPH01000312 994 0
ALPH01000038 978 0
ALPH01000266 955 0
ALPH01000085 950 0
ALPH01000170 950 0
ALPH01000255 950 0
ALPH01000034 946 0
ALPH01000296 943 0
ALPH01000193 932 0
ALPH01000076 928 0
ALPH01000285 925 0
ALPH01000246 922 0
ALPH01000161 883 0
ALPH01000096 874 0
ALPH01000136 872 0
ALPH01000263 867 0
ALPH01000089 867 0
ALPH01000235 864 0
ALPH01000302 855 0
ALPH01000245 848 0
ALPH01000290 843 0
ALPH01000307 841 0
ALPH01000216 840 0
ALPH01000224 837 0
ALPH01000325 829 0
ALPH01000156 816 0
ALPH01000319 816 0
ALPH01000022 812 0
ALPH01000284 804 0
ALPH01000194 803 0
ALPH01000334 795 0
ALPH01000018 793 0
ALPH01000062 790 0
ALPH01000211 789 0
ALPH01000289 787 0
ALPH01000330 785 0
ALPH01000278 780 0
ALPH01000280 760 0
ALPH01000043 755 0
ALPH01000155 755 0
ALPH01000316 750 0
ALPH01000147 746 0
ALPH01000291 742 0
ALPH01000112 741 0
ALPH01000215 737 0
ALPH01000187 734 0
ALPH01000139 718 0
ALPH01000109 699 0
ALPH01000218 697 0
ALPH01000029 691 0
ALPH01000192 686 0
ALPH01000210 672 0
ALPH01000053 664 0
ALPH01000031 646 0
ALPH01000105 646 0
ALPH01000209 639 0
ALPH01000102 637 0
ALPH01000198 634 0
ALPH01000202 629 0
ALPH01000274 628 0
ALPH01000133 620 0
ALPH01000197 615 0
ALPH01000144 607 0
ALPH01000300 603 0
ALPH01000167 601 0
ALPH01000061 600 0
ALPH01000223 599 0
ALPH01000177 593 0
ALPH01000077 592 0
ALPH01000339 578 0
ALPH01000012 574 0
ALPH01000176 573 0
ALPH01000207 571 0
ALPH01000134 556 0
ALPH01000020 550 0
ALPH01000080 549 0
ALPH01000305 538 0
ALPH01000251 537 0
ALPH01000143 537 0
ALPH01000271 535 0
ALPH01000066 534 0
ALPH01000243 531 0
ALPH01000321 526 0
ALPH01000208 524 0
ALPH01000111 523 0
ALPH01000073 522 0
ALPH01000098 520 0
ALPH01000203 519 0
ALPH01000103 512 0
ALPH01000067 507 0
ALPH01000153 507 0
ALPH01000311 505 0
ALPH01000269 497 0
ALPH01000227 496 0
ALPH01000183 490 0
ALPH01000239 488 0
ALPH01000016 487 0
ALPH01000064 485 0
ALPH01000332 482 0
ALPH01000025 480 0
ALPH01000150 479 0
ALPH01000082 473 0
ALPH01000158 473 0
ALPH01000057 464 0
ALPH01000088 464 0
ALPH01000081 463 0
ALPH01000046 462 0
ALPH01000323 460 0
ALPH01000261 457 0
ALPH01000091 456 0
ALPH01000275 454 0
ALPH01000047 452 0
ALPH01000015 449 0
ALPH01000011 447 0
ALPH01000141 445 0
ALPH01000273 443 0
ALPH01000162 440 0
ALPH01000084 437 0
ALPH01000035 436 0
ALPH01000179 436 0
ALPH01000270 436 0
ALPH01000282 435 0
ALPH01000297 433 0
ALPH01000281 432 0
ALPH01000231 431 0
ALPH01000119 428 0
ALPH01000056 427 0
ALPH01000345 425 0
ALPH01000206 422 0
ALPH01000019 422 0
ALPH01000175 421 0
ALPH01000160 420 0
ALPH01000181 419 0
ALPH01000232 418 0
ALPH01000078 417 0
ALPH01000242 417 0
ALPH01000329 415 0
ALPH01000106 412 0
ALPH01000027 410 0
ALPH01000277 409 0
ALPH01000002 409 0
ALPH01000045 408 0
ALPH01000173 407 0
ALPH01000348 405 0
ALPH01000221 403 0
ALPH01000240 403 0
ALPH01000005 402 0
ALPH01000069 400 0
ALPH01000314 395 0
ALPH01000337 386 0
ALPH01000138 384 0
ALPH01000288 383 0
ALPH01000287 382 0
ALPH01000308 375 0
ALPH01000003 371 0
ALPH01000191 369 0
ALPH01000226 368 0
ALPH01000189 364 0
ALPH01000122 364 0
ALPH01000168 364 0
ALPH01000318 360 0
ALPH01000199 357 0
ALPH01000072 355 0
ALPH01000234 355 0
ALPH01000327 355 0
ALPH01000094 351 0
ALPH01000008 350 0
ALPH01000222 346 0
ALPH01000212 341 0
ALPH01000128 340 0
ALPH01000213 339 0
ALPH01000335 338 0
ALPH01000322 337 0
ALPH01000042 336 0
ALPH01000309 336 0
ALPH01000114 336 0
ALPH01000313 330 0
ALPH01000238 329 0
ALPH01000178 329 0
ALPH01000145 328 0
ALPH01000090 326 0
ALPH01000342 324 0
ALPH01000264 323 0
ALPH01000129 323 0
ALPH01000254 318 0
ALPH01000229 316 0
ALPH01000065 297 0
ALPH01000252 296 0
ALPH01000118 292 0
ALPH01000051 290 0
ALPH01000180 288 0
ALPH01000101 282 0
ALPH01000336 282 0
ALPH01000116 281 0
ALPH01000253 280 0
ALPH01000099 278 0
ALPH01000320 278 0
ALPH01000024 278 0
ALPH01000228 275 0
ALPH01000333 272 0
ALPH01000344 265 0
ALPH01000148 264 0
ALPH01000130 253 0
ALPH01000140 252 0
ALPH01000166 251 0
ALPH01000258 251 0
ALPH01000086 245 0
ALPH01000165 241 0
ALPH01000262 226 0
ALPH01000220 218 0
ALPH01000298 215 0
ALPH01000030 207 0
ALPH01000074 206 0
ALPH01000174 204 0
ALPH01000079 202 0
ALPH01000233 202 0
ALPH01000059 202 0
Total 561,998 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000291845.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000291845.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000291845.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000291845.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000291845.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000291845.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000291845.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000291845.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000291845.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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