cyanobase » Prochlorococcus sp. W8

Prochlorococcus sp. W8

Summary

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Data source name GCA_000291825.1
Full name Prochlorococcus sp. W8 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
ALPF01000024 124,095 0
ALPF01000004 113,584 0
ALPF01000001 106,971 0
ALPF01000033 91,651 0
ALPF01000003 85,524 0
ALPF01000031 54,398 0
ALPF01000044 37,349 0
ALPF01000015 28,161 0
ALPF01000022 27,784 0
ALPF01000051 26,710 0
ALPF01000058 26,329 0
ALPF01000041 25,258 0
ALPF01000012 10,683 0
ALPF01000020 10,668 0
ALPF01000006 7,910 0
ALPF01000028 5,895 0
ALPF01000023 5,396 0
ALPF01000057 4,793 0
ALPF01000008 4,791 0
ALPF01000017 4,694 0
ALPF01000048 3,696 0
ALPF01000037 3,573 0
ALPF01000021 3,311 0
ALPF01000049 3,103 0
ALPF01000026 2,135 0
ALPF01000056 1,724 0
ALPF01000025 1,680 0
ALPF01000036 1,662 0
ALPF01000045 1,421 0
ALPF01000014 1,391 0
ALPF01000043 1,288 0
ALPF01000055 1,203 0
ALPF01000040 1,139 0
ALPF01000016 1,039 0
ALPF01000035 935 0
ALPF01000002 815 0
ALPF01000009 732 0
ALPF01000030 641 0
ALPF01000018 640 0
ALPF01000038 594 0
ALPF01000034 587 0
ALPF01000039 532 0
ALPF01000019 524 0
ALPF01000005 491 0
ALPF01000013 397 0
ALPF01000027 396 0
ALPF01000010 386 0
ALPF01000050 367 0
ALPF01000032 333 0
ALPF01000052 307 0
ALPF01000007 289 0
ALPF01000053 277 0
ALPF01000046 276 0
ALPF01000054 261 0
ALPF01000011 259 0
ALPF01000029 250 0
ALPF01000042 242 0
ALPF01000047 216 0
Total 841,756 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000291825.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000291825.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000291825.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000291825.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000291825.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000291825.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000291825.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000291825.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000291825.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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