cyanobase » Prochlorococcus sp. W7

Prochlorococcus sp. W7

Summary

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Data source name GCA_000291805.1
Full name Prochlorococcus sp. W7 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
ALPE01000063 108,005 0
ALPE01000035 75,925 0
ALPE01000080 68,620 0
ALPE01000008 65,302 0
ALPE01000060 48,859 0
ALPE01000021 46,183 0
ALPE01000064 39,428 0
ALPE01000023 37,251 0
ALPE01000087 34,308 0
ALPE01000038 27,901 0
ALPE01000042 27,771 0
ALPE01000050 27,717 0
ALPE01000073 27,247 0
ALPE01000041 21,595 0
ALPE01000056 20,088 0
ALPE01000072 17,814 0
ALPE01000097 17,002 0
ALPE01000062 16,121 0
ALPE01000052 15,751 0
ALPE01000103 10,789 0
ALPE01000043 10,248 0
ALPE01000019 9,509 0
ALPE01000084 8,125 0
ALPE01000088 7,749 0
ALPE01000004 7,242 0
ALPE01000053 7,207 0
ALPE01000059 4,823 0
ALPE01000027 4,638 0
ALPE01000016 4,579 0
ALPE01000066 4,383 0
ALPE01000010 4,277 0
ALPE01000108 4,206 0
ALPE01000096 4,003 0
ALPE01000081 3,891 0
ALPE01000070 3,691 0
ALPE01000030 3,588 0
ALPE01000078 3,405 0
ALPE01000074 3,100 0
ALPE01000107 2,896 0
ALPE01000077 2,594 0
ALPE01000029 2,590 0
ALPE01000061 2,248 0
ALPE01000022 2,085 0
ALPE01000002 1,978 0
ALPE01000089 1,608 0
ALPE01000098 1,521 0
ALPE01000102 1,447 0
ALPE01000105 1,400 0
ALPE01000034 1,332 0
ALPE01000099 1,297 0
ALPE01000057 1,155 0
ALPE01000104 1,055 0
ALPE01000048 1,052 0
ALPE01000091 986 0
ALPE01000079 905 0
ALPE01000075 877 0
ALPE01000065 848 0
ALPE01000012 814 0
ALPE01000094 814 0
ALPE01000020 782 0
ALPE01000033 776 0
ALPE01000051 735 0
ALPE01000090 711 0
ALPE01000085 709 0
ALPE01000017 676 0
ALPE01000045 659 0
ALPE01000069 657 0
ALPE01000106 651 0
ALPE01000032 596 0
ALPE01000026 543 0
ALPE01000044 531 0
ALPE01000076 513 0
ALPE01000071 505 0
ALPE01000031 482 0
ALPE01000100 481 0
ALPE01000001 473 0
ALPE01000036 453 0
ALPE01000054 451 0
ALPE01000093 422 0
ALPE01000040 421 0
ALPE01000109 413 0
ALPE01000011 406 0
ALPE01000101 406 0
ALPE01000049 396 0
ALPE01000037 393 0
ALPE01000013 384 0
ALPE01000005 374 0
ALPE01000024 373 0
ALPE01000055 345 0
ALPE01000086 345 0
ALPE01000007 343 0
ALPE01000092 333 0
ALPE01000014 328 0
ALPE01000006 324 0
ALPE01000025 323 0
ALPE01000058 310 0
ALPE01000047 309 0
ALPE01000082 288 0
ALPE01000028 285 0
ALPE01000009 266 0
ALPE01000046 261 0
ALPE01000083 260 0
ALPE01000067 259 0
ALPE01000039 246 0
ALPE01000018 244 0
ALPE01000095 244 0
ALPE01000003 243 0
ALPE01000068 242 0
ALPE01000015 208 0
Total 905,221 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000291805.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000291805.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000291805.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000291805.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000291805.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000291805.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000291805.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000291805.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000291805.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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