cyanobase » Prochlorococcus sp. W4

Prochlorococcus sp. W4

Summary

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Data source name GCA_000291785.1
Full name Prochlorococcus sp. W4 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
ALPD01000018 58,738 0
ALPD01000016 44,134 0
ALPD01000003 40,839 0
ALPD01000059 36,777 0
ALPD01000006 32,659 0
ALPD01000097 27,938 0
ALPD01000019 27,558 0
ALPD01000017 27,505 0
ALPD01000073 27,379 0
ALPD01000049 26,951 0
ALPD01000050 26,740 0
ALPD01000077 22,887 0
ALPD01000044 21,235 0
ALPD01000037 19,071 0
ALPD01000040 16,612 0
ALPD01000060 15,894 0
ALPD01000101 15,012 0
ALPD01000034 14,199 0
ALPD01000085 14,191 0
ALPD01000081 14,032 0
ALPD01000078 13,530 0
ALPD01000076 12,337 0
ALPD01000048 12,057 0
ALPD01000041 11,534 0
ALPD01000054 10,560 0
ALPD01000091 10,215 0
ALPD01000031 8,971 0
ALPD01000062 8,879 0
ALPD01000065 8,657 0
ALPD01000082 7,762 0
ALPD01000104 6,809 0
ALPD01000064 6,495 0
ALPD01000023 6,061 0
ALPD01000057 6,026 0
ALPD01000045 4,926 0
ALPD01000007 4,785 0
ALPD01000051 4,695 0
ALPD01000042 4,607 0
ALPD01000103 4,486 0
ALPD01000061 4,249 0
ALPD01000022 3,928 0
ALPD01000015 3,921 0
ALPD01000102 3,896 0
ALPD01000011 3,822 0
ALPD01000005 3,766 0
ALPD01000063 3,685 0
ALPD01000100 3,484 0
ALPD01000002 2,883 0
ALPD01000043 2,544 0
ALPD01000098 2,060 0
ALPD01000053 1,930 0
ALPD01000090 1,919 0
ALPD01000095 1,842 0
ALPD01000047 1,796 0
ALPD01000014 1,795 0
ALPD01000028 1,744 0
ALPD01000036 1,712 0
ALPD01000071 1,663 0
ALPD01000099 1,522 0
ALPD01000093 1,349 0
ALPD01000066 1,327 0
ALPD01000010 1,299 0
ALPD01000046 1,296 0
ALPD01000032 1,215 0
ALPD01000092 1,181 0
ALPD01000025 1,162 0
ALPD01000013 1,158 0
ALPD01000084 847 0
ALPD01000058 723 0
ALPD01000094 710 0
ALPD01000012 700 0
ALPD01000056 681 0
ALPD01000069 679 0
ALPD01000020 655 0
ALPD01000075 630 0
ALPD01000035 625 0
ALPD01000009 623 0
ALPD01000086 614 0
ALPD01000055 592 0
ALPD01000052 564 0
ALPD01000070 532 0
ALPD01000039 523 0
ALPD01000072 472 0
ALPD01000004 469 0
ALPD01000038 461 0
ALPD01000089 461 0
ALPD01000026 452 0
ALPD01000080 437 0
ALPD01000087 414 0
ALPD01000024 411 0
ALPD01000068 394 0
ALPD01000074 390 0
ALPD01000088 372 0
ALPD01000001 332 0
ALPD01000008 331 0
ALPD01000030 320 0
ALPD01000027 312 0
ALPD01000029 301 0
ALPD01000067 291 0
ALPD01000021 279 0
ALPD01000033 268 0
ALPD01000096 250 0
ALPD01000079 247 0
ALPD01000083 232 0
Total 765,485 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000291785.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000291785.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000291785.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000291785.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000291785.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000291785.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000291785.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000291785.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000291785.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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