cyanobase » Acaryochloris sp. CCMEE 5410

Acaryochloris sp. CCMEE 5410

Summary

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Data source name GCA_000238775.2
Full name Acaryochloris sp. CCMEE 5410 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Acaryochloris.

Genome Information

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Chromosomes
Name Size (bp) Genes
AFEJ01000294 137,522 0
AFEJ01000295 129,311 0
AFEJ01000016 112,671 0
AFEJ01000296 104,624 0
AFEJ01000297 97,037 0
AFEJ01000019 93,128 0
AFEJ01000191 86,654 0
AFEJ01000298 86,157 0
AFEJ01000208 84,060 0
AFEJ01000299 81,197 0
AFEJ01000038 79,850 0
AFEJ01000140 76,703 0
AFEJ01000209 76,346 0
AFEJ01000169 75,121 0
AFEJ01000300 74,912 0
AFEJ01000219 72,773 0
AFEJ01000170 70,330 0
AFEJ01000301 67,450 0
AFEJ01000172 67,327 0
AFEJ01000302 66,598 0
AFEJ01000303 66,530 0
AFEJ01000287 66,519 0
AFEJ01000304 65,779 0
AFEJ01000291 65,290 0
AFEJ01000305 64,831 0
AFEJ01000306 61,066 0
AFEJ01000307 59,735 0
AFEJ01000001 59,354 0
AFEJ01000040 59,042 0
AFEJ01000136 57,932 0
AFEJ01000308 57,052 0
AFEJ01000310 56,844 0
AFEJ01000309 56,739 0
AFEJ01000130 56,043 0
AFEJ01000311 54,129 0
AFEJ01000312 52,638 0
AFEJ01000313 51,437 0
AFEJ01000314 50,516 0
AFEJ01000072 50,399 0
AFEJ01000058 49,659 0
AFEJ01000257 49,514 0
AFEJ01000187 49,251 0
AFEJ01000315 49,098 0
AFEJ01000151 48,889 0
AFEJ01000316 48,880 0
AFEJ01000273 48,633 0
AFEJ01000245 48,003 0
AFEJ01000317 47,730 0
AFEJ01000075 47,239 0
AFEJ01000318 46,935 0
AFEJ01000051 46,875 0
AFEJ01000319 44,986 0
AFEJ01000050 44,007 0
AFEJ01000320 43,816 0
AFEJ01000321 43,633 0
AFEJ01000322 43,080 0
AFEJ01000323 42,634 0
AFEJ01000201 41,134 0
AFEJ01000324 41,063 0
AFEJ01000325 40,397 0
AFEJ01000066 40,052 0
AFEJ01000032 39,262 0
AFEJ01000326 38,441 0
AFEJ01000327 37,625 0
AFEJ01000212 37,333 0
AFEJ01000328 37,118 0
AFEJ01000204 36,920 0
AFEJ01000329 36,324 0
AFEJ01000330 36,296 0
AFEJ01000158 36,164 0
AFEJ01000331 35,248 0
AFEJ01000332 34,871 0
AFEJ01000333 34,683 0
AFEJ01000334 34,221 0
AFEJ01000335 33,778 0
AFEJ01000336 33,638 0
AFEJ01000031 33,408 0
AFEJ01000039 33,183 0
AFEJ01000337 33,100 0
AFEJ01000154 31,758 0
AFEJ01000338 31,598 0
AFEJ01000244 31,298 0
AFEJ01000341 31,223 0
AFEJ01000340 31,207 0
AFEJ01000155 31,005 0
AFEJ01000339 30,986 0
AFEJ01000342 30,749 0
AFEJ01000343 30,200 0
AFEJ01000029 29,755 0
AFEJ01000344 29,729 0
AFEJ01000079 29,656 0
AFEJ01000041 29,641 0
AFEJ01000345 29,494 0
AFEJ01000346 29,390 0
AFEJ01000124 28,975 0
AFEJ01000347 28,548 0
AFEJ01000349 28,387 0
AFEJ01000024 28,363 0
AFEJ01000348 27,907 0
AFEJ01000159 27,543 0
AFEJ01000350 27,354 0
AFEJ01000351 27,247 0
AFEJ01000146 27,075 0
AFEJ01000352 26,777 0
AFEJ01000207 26,511 0
AFEJ01000353 26,466 0
AFEJ01000035 26,307 0
AFEJ01000132 25,983 0
AFEJ01000286 25,904 0
AFEJ01000354 25,788 0
AFEJ01000355 25,487 0
AFEJ01000356 25,438 0
AFEJ01000358 25,334 0
AFEJ01000020 25,225 0
AFEJ01000200 25,188 0
AFEJ01000357 25,182 0
AFEJ01000359 24,993 0
AFEJ01000360 24,764 0
AFEJ01000052 24,589 0
AFEJ01000074 24,198 0
AFEJ01000199 24,065 0
AFEJ01000087 23,851 0
AFEJ01000361 23,398 0
AFEJ01000162 23,112 0
AFEJ01000156 22,636 0
AFEJ01000176 22,581 0
AFEJ01000362 22,336 0
AFEJ01000036 22,266 0
AFEJ01000064 22,263 0
AFEJ01000030 22,121 0
AFEJ01000195 21,882 0
AFEJ01000363 21,464 0
AFEJ01000364 21,056 0
AFEJ01000366 21,005 0
AFEJ01000365 20,972 0
AFEJ01000008 20,882 0
AFEJ01000367 20,642 0
AFEJ01000012 20,636 0
AFEJ01000370 20,567 0
AFEJ01000369 20,523 0
AFEJ01000368 20,395 0
AFEJ01000371 20,212 0
AFEJ01000372 19,957 0
AFEJ01000373 19,628 0
AFEJ01000374 19,547 0
AFEJ01000063 19,262 0
AFEJ01000160 18,997 0
AFEJ01000375 18,888 0
AFEJ01000376 18,518 0
AFEJ01000070 17,918 0
AFEJ01000206 17,634 0
AFEJ01000379 17,619 0
AFEJ01000013 17,602 0
AFEJ01000378 17,489 0
AFEJ01000377 17,428 0
AFEJ01000380 17,284 0
AFEJ01000382 17,176 0
AFEJ01000381 16,939 0
AFEJ01000383 16,476 0
AFEJ01000076 16,350 0
AFEJ01000384 16,250 0
AFEJ01000007 15,830 0
AFEJ01000168 15,779 0
AFEJ01000386 15,710 0
AFEJ01000385 15,601 0
AFEJ01000189 15,367 0
AFEJ01000387 15,301 0
AFEJ01000389 15,097 0
AFEJ01000086 15,056 0
AFEJ01000390 14,987 0
AFEJ01000388 14,943 0
AFEJ01000190 14,819 0
AFEJ01000392 14,818 0
AFEJ01000391 14,811 0
AFEJ01000171 14,576 0
AFEJ01000393 14,537 0
AFEJ01000395 14,524 0
AFEJ01000394 14,372 0
AFEJ01000396 14,081 0
AFEJ01000397 13,993 0
AFEJ01000398 13,830 0
AFEJ01000401 13,366 0
AFEJ01000399 13,353 0
AFEJ01000400 13,179 0
AFEJ01000164 13,105 0
AFEJ01000144 12,756 0
AFEJ01000402 12,738 0
AFEJ01000228 12,510 0
AFEJ01000061 12,365 0
AFEJ01000404 12,312 0
AFEJ01000403 12,284 0
AFEJ01000406 11,685 0
AFEJ01000405 11,668 0
AFEJ01000065 11,622 0
AFEJ01000407 11,502 0
AFEJ01000408 11,137 0
AFEJ01000409 10,993 0
AFEJ01000081 10,805 0
AFEJ01000143 10,684 0
AFEJ01000152 10,550 0
AFEJ01000411 10,341 0
AFEJ01000413 10,337 0
AFEJ01000412 10,245 0
AFEJ01000414 10,194 0
AFEJ01000410 10,023 0
AFEJ01000416 9,944 0
AFEJ01000415 9,912 0
AFEJ01000028 9,734 0
AFEJ01000417 9,692 0
AFEJ01000260 9,608 0
AFEJ01000418 9,568 0
AFEJ01000043 9,527 0
AFEJ01000018 9,145 0
AFEJ01000184 9,121 0
AFEJ01000167 9,055 0
AFEJ01000037 9,054 0
AFEJ01000173 8,753 0
AFEJ01000419 8,626 0
AFEJ01000420 8,602 0
AFEJ01000421 8,509 0
AFEJ01000423 8,453 0
AFEJ01000424 8,266 0
AFEJ01000422 8,258 0
AFEJ01000425 8,215 0
AFEJ01000426 8,034 0
AFEJ01000203 7,911 0
AFEJ01000150 7,825 0
AFEJ01000427 7,756 0
AFEJ01000428 7,739 0
AFEJ01000089 7,634 0
AFEJ01000430 7,428 0
AFEJ01000005 7,388 0
AFEJ01000429 7,158 0
AFEJ01000431 7,097 0
AFEJ01000433 7,001 0
AFEJ01000434 6,790 0
AFEJ01000078 6,717 0
AFEJ01000042 6,704 0
AFEJ01000435 6,675 0
AFEJ01000436 6,622 0
AFEJ01000437 6,586 0
AFEJ01000432 6,370 0
AFEJ01000438 6,254 0
AFEJ01000006 6,187 0
AFEJ01000205 6,177 0
AFEJ01000439 6,164 0
AFEJ01000440 6,099 0
AFEJ01000441 6,050 0
AFEJ01000442 5,862 0
AFEJ01000262 5,844 0
AFEJ01000114 5,794 0
AFEJ01000004 5,695 0
AFEJ01000174 5,573 0
AFEJ01000443 5,482 0
AFEJ01000125 5,372 0
AFEJ01000444 5,336 0
AFEJ01000163 5,329 0
AFEJ01000445 5,284 0
AFEJ01000446 5,228 0
AFEJ01000198 5,142 0
AFEJ01000447 5,047 0
AFEJ01000196 5,020 0
AFEJ01000090 5,000 0
AFEJ01000448 4,815 0
AFEJ01000197 4,794 0
AFEJ01000015 4,785 0
AFEJ01000175 4,666 0
AFEJ01000017 4,450 0
AFEJ01000165 4,425 0
AFEJ01000284 4,424 0
AFEJ01000449 4,423 0
AFEJ01000217 4,368 0
AFEJ01000054 4,353 0
AFEJ01000450 4,128 0
AFEJ01000453 4,080 0
AFEJ01000011 4,052 0
AFEJ01000452 4,027 0
AFEJ01000451 4,011 0
AFEJ01000179 3,900 0
AFEJ01000085 3,885 0
AFEJ01000454 3,859 0
AFEJ01000181 3,845 0
AFEJ01000003 3,844 0
AFEJ01000456 3,728 0
AFEJ01000145 3,675 0
AFEJ01000148 3,653 0
AFEJ01000457 3,644 0
AFEJ01000455 3,628 0
AFEJ01000289 3,548 0
AFEJ01000128 3,518 0
AFEJ01000033 3,510 0
AFEJ01000247 3,499 0
AFEJ01000182 3,405 0
AFEJ01000460 3,340 0
AFEJ01000077 3,304 0
AFEJ01000178 3,292 0
AFEJ01000458 3,247 0
AFEJ01000461 3,243 0
AFEJ01000071 3,220 0
AFEJ01000459 3,207 0
AFEJ01000180 3,116 0
AFEJ01000462 3,069 0
AFEJ01000027 3,037 0
AFEJ01000192 2,956 0
AFEJ01000026 2,836 0
AFEJ01000213 2,830 0
AFEJ01000467 2,800 0
AFEJ01000218 2,789 0
AFEJ01000134 2,782 0
AFEJ01000055 2,739 0
AFEJ01000466 2,728 0
AFEJ01000465 2,712 0
AFEJ01000464 2,689 0
AFEJ01000271 2,632 0
AFEJ01000469 2,623 0
AFEJ01000471 2,599 0
AFEJ01000468 2,555 0
AFEJ01000047 2,545 0
AFEJ01000463 2,539 0
AFEJ01000166 2,493 0
AFEJ01000475 2,417 0
AFEJ01000470 2,367 0
AFEJ01000472 2,331 0
AFEJ01000193 2,312 0
AFEJ01000009 2,312 0
AFEJ01000473 2,308 0
AFEJ01000478 2,251 0
AFEJ01000474 2,243 0
AFEJ01000153 2,223 0
AFEJ01000268 2,213 0
AFEJ01000249 2,149 0
AFEJ01000069 2,146 0
AFEJ01000046 2,097 0
AFEJ01000263 2,078 0
AFEJ01000025 2,055 0
AFEJ01000147 2,045 0
AFEJ01000157 2,032 0
AFEJ01000023 2,009 0
AFEJ01000480 2,003 0
AFEJ01000479 1,982 0
AFEJ01000183 1,965 0
AFEJ01000477 1,939 0
AFEJ01000246 1,913 0
AFEJ01000278 1,902 0
AFEJ01000481 1,901 0
AFEJ01000476 1,860 0
AFEJ01000277 1,831 0
AFEJ01000186 1,817 0
AFEJ01000135 1,816 0
AFEJ01000485 1,808 0
AFEJ01000194 1,798 0
AFEJ01000045 1,789 0
AFEJ01000487 1,778 0
AFEJ01000290 1,741 0
AFEJ01000129 1,729 0
AFEJ01000060 1,700 0
AFEJ01000251 1,696 0
AFEJ01000226 1,694 0
AFEJ01000216 1,693 0
AFEJ01000231 1,663 0
AFEJ01000489 1,650 0
AFEJ01000272 1,641 0
AFEJ01000010 1,609 0
AFEJ01000488 1,603 0
AFEJ01000227 1,586 0
AFEJ01000002 1,575 0
AFEJ01000493 1,560 0
AFEJ01000491 1,534 0
AFEJ01000483 1,533 0
AFEJ01000266 1,509 0
AFEJ01000021 1,474 0
AFEJ01000229 1,467 0
AFEJ01000495 1,440 0
AFEJ01000492 1,435 0
AFEJ01000254 1,416 0
AFEJ01000138 1,341 0
AFEJ01000490 1,333 0
AFEJ01000062 1,329 0
AFEJ01000292 1,309 0
AFEJ01000274 1,296 0
AFEJ01000279 1,292 0
AFEJ01000484 1,290 0
AFEJ01000482 1,290 0
AFEJ01000269 1,278 0
AFEJ01000499 1,252 0
AFEJ01000220 1,252 0
AFEJ01000044 1,252 0
AFEJ01000486 1,223 0
AFEJ01000498 1,188 0
AFEJ01000202 1,185 0
AFEJ01000232 1,177 0
AFEJ01000496 1,169 0
AFEJ01000285 1,168 0
AFEJ01000091 1,153 0
AFEJ01000241 1,145 0
AFEJ01000139 1,138 0
AFEJ01000255 1,131 0
AFEJ01000503 1,128 0
AFEJ01000059 1,127 0
AFEJ01000497 1,116 0
AFEJ01000508 1,113 0
AFEJ01000214 1,113 0
AFEJ01000095 1,102 0
AFEJ01000233 1,098 0
AFEJ01000056 1,092 0
AFEJ01000034 1,089 0
AFEJ01000494 1,076 0
AFEJ01000057 1,065 0
AFEJ01000131 1,054 0
AFEJ01000068 1,052 0
AFEJ01000264 1,041 0
AFEJ01000500 1,034 0
AFEJ01000073 1,013 0
AFEJ01000161 1,007 0
AFEJ01000048 1,001 0
AFEJ01000103 1,000 0
AFEJ01000022 999 0
AFEJ01000149 995 0
AFEJ01000238 989 0
AFEJ01000053 986 0
AFEJ01000116 983 0
AFEJ01000265 955 0
AFEJ01000092 950 0
AFEJ01000283 931 0
AFEJ01000211 924 0
AFEJ01000127 908 0
AFEJ01000080 905 0
AFEJ01000248 899 0
AFEJ01000221 887 0
AFEJ01000505 877 0
AFEJ01000501 876 0
AFEJ01000210 854 0
AFEJ01000281 850 0
AFEJ01000253 847 0
AFEJ01000250 839 0
AFEJ01000014 827 0
AFEJ01000258 814 0
AFEJ01000101 811 0
AFEJ01000267 803 0
AFEJ01000243 801 0
AFEJ01000230 793 0
AFEJ01000222 786 0
AFEJ01000093 783 0
AFEJ01000188 782 0
AFEJ01000107 779 0
AFEJ01000252 777 0
AFEJ01000083 776 0
AFEJ01000084 776 0
AFEJ01000261 772 0
AFEJ01000256 771 0
AFEJ01000099 759 0
AFEJ01000122 757 0
AFEJ01000239 744 0
AFEJ01000177 742 0
AFEJ01000224 731 0
AFEJ01000123 722 0
AFEJ01000119 719 0
AFEJ01000109 716 0
AFEJ01000106 708 0
AFEJ01000111 701 0
AFEJ01000270 699 0
AFEJ01000235 697 0
AFEJ01000510 690 0
AFEJ01000126 685 0
AFEJ01000225 683 0
AFEJ01000509 682 0
AFEJ01000502 681 0
AFEJ01000237 678 0
AFEJ01000100 677 0
AFEJ01000096 676 0
AFEJ01000236 671 0
AFEJ01000113 664 0
AFEJ01000097 658 0
AFEJ01000504 654 0
AFEJ01000293 651 0
AFEJ01000141 642 0
AFEJ01000506 642 0
AFEJ01000115 640 0
AFEJ01000276 636 0
AFEJ01000282 628 0
AFEJ01000133 626 0
AFEJ01000223 624 0
AFEJ01000067 614 0
AFEJ01000105 612 0
AFEJ01000215 610 0
AFEJ01000098 607 0
AFEJ01000142 607 0
AFEJ01000102 606 0
AFEJ01000185 590 0
AFEJ01000280 589 0
AFEJ01000288 587 0
AFEJ01000120 581 0
AFEJ01000507 578 0
AFEJ01000121 576 0
AFEJ01000049 574 0
AFEJ01000118 568 0
AFEJ01000110 567 0
AFEJ01000240 567 0
AFEJ01000234 557 0
AFEJ01000088 535 0
AFEJ01000259 535 0
AFEJ01000242 533 0
AFEJ01000117 532 0
AFEJ01000082 528 0
AFEJ01000511 527 0
AFEJ01000275 520 0
AFEJ01000112 517 0
AFEJ01000104 513 0
AFEJ01000108 512 0
AFEJ01000137 510 0
AFEJ01000094 505 0
Total 7,875,477 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000238775.2

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000238775.2/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000238775.2/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000238775.2/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000238775.2/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000238775.2/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000238775.2/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000238775.2/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000238775.2/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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