cyanobase » Synechococcus sp. WH 8016

Synechococcus sp. WH 8016

Summary

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Data source name GCA_000230675.2
Full name Synechococcus sp. WH 8016
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
AGIK01000001 1,259,206 1,490
AGIK01000002 347,852 349
AGIK01000003 292,152 314
AGIK01000004 283,848 319
AGIK01000005 159,548 187
AGIK01000006 153,038 180
AGIK01000007 122,605 117
AGIK01000008 60,088 55
AGIK01000009 4,029 4
AGIK01000010 3,913 7
AGIK01000011 2,723 3
AGIK01000012 1,726 4
AGIK01000013 1,583 3
AGIK01000014 1,017 2
AGIK01000015 787 2
AGIK01000016 728 1
Total 2,694,843 3,037
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000230675.2 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000230675.2/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000230675.2/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000230675.2/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000230675.2/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000230675.2/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000230675.2/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000230675.2/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000230675.2/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000230675.2/genes/interpro.txt (File format)

MicrobeBase