cyanobase » Synechococcus sp. WH 8016

Synechococcus sp. WH 8016

Summary

? | +/- | Top
Data source name GCA_000230675.2
Full name Synechococcus sp. WH 8016 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
AGIK01000001 1,259,206 1,490
AGIK01000002 347,852 349
AGIK01000003 292,152 314
AGIK01000004 283,848 319
AGIK01000005 159,548 187
AGIK01000006 153,038 180
AGIK01000007 122,605 117
AGIK01000008 60,088 55
AGIK01000009 4,029 4
AGIK01000010 3,913 7
AGIK01000011 2,723 3
AGIK01000012 1,726 4
AGIK01000013 1,583 3
AGIK01000014 1,017 2
AGIK01000015 787 2
AGIK01000016 728 1
Total 2,694,843 3,037
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset GCA_000230675.2

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000230675.2/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000230675.2/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000230675.2/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000230675.2/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000230675.2/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000230675.2/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000230675.2/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000230675.2/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer