cyanobase » Microcoleus vaginatus FGP-2

Microcoleus vaginatus FGP-2

Summary

? | +/- | Top
Data source name GCA_000214075.2
Full name Microcoleus vaginatus FGP-2 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
AFJC01000001 1,077,436 853
AFJC01000002 742,343 579
AFJC01000003 513,040 412
AFJC01000004 421,503 299
AFJC01000005 406,876 332
AFJC01000006 351,362 288
AFJC01000007 350,276 276
AFJC01000008 300,976 235
AFJC01000009 279,989 201
AFJC01000010 228,077 146
AFJC01000011 206,798 189
AFJC01000012 195,104 155
AFJC01000013 172,706 136
AFJC01000014 164,627 128
AFJC01000015 157,886 117
AFJC01000016 148,177 110
AFJC01000017 111,296 98
AFJC01000018 110,426 82
AFJC01000019 107,990 90
AFJC01000020 105,060 75
AFJC01000021 76,931 56
AFJC01000022 67,436 40
AFJC01000023 58,257 41
AFJC01000024 55,598 44
AFJC01000025 55,113 46
AFJC01000026 49,115 22
AFJC01000027 30,054 30
AFJC01000028 25,714 21
AFJC01000029 24,340 24
AFJC01000030 22,406 18
AFJC01000031 14,593 14
AFJC01000032 12,844 4
AFJC01000033 9,969 11
AFJC01000034 8,912 3
AFJC01000035 8,701 15
AFJC01000036 6,107 3
AFJC01000037 5,895 6
AFJC01000038 5,578 3
AFJC01000039 5,012 7
AFJC01000040 4,406 3
Total 6,698,929 5,212
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset GCA_000214075.2

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000214075.2/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000214075.2/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000214075.2/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000214075.2/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000214075.2/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000214075.2/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000214075.2/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000214075.2/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer