cyanobase » Moorea producens 3L

Moorea producens 3L

Summary

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Data source name GCA_000211815.1
Full name Moorea producens 3L External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.

Genome Information

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Chromosomes
Name Size (bp) Genes
GL890840 593,782 503
GL890970 451,619 391
GL890825 358,919 305
GL890823 309,732 258
GL890971 300,795 263
GL890930 268,859 234
GL890973 244,819 235
GL890969 197,448 179
GL890940 184,539 168
GL890874 170,319 138
GL890945 169,578 153
GL890942 159,567 148
GL890965 155,173 130
GL890948 144,430 106
GL890927 137,686 115
GL890956 126,422 127
GL890975 125,130 78
GL890848 124,203 123
GL890964 123,305 114
GL890841 123,031 121
GL890939 120,428 118
GL890820 119,630 109
GL890931 116,552 117
GL890843 111,755 97
GL890974 108,712 103
GL890832 108,474 87
GL890816 108,346 97
GL890954 107,547 108
GL890953 101,863 110
GL890819 101,286 97
GL890851 100,823 94
GL890929 99,211 76
GL890967 98,972 83
GL890968 93,046 84
GL890828 92,766 85
GL890946 91,244 76
GL890815 84,937 79
GL890944 81,931 77
GL890934 79,166 70
GL890924 77,032 55
GL890829 76,749 83
GL890907 76,441 87
GL890873 75,348 68
GL890827 66,452 58
GL890852 65,838 45
GL890839 59,832 55
GL890941 58,151 58
GL890838 54,618 55
GL890833 54,324 44
GL890966 54,257 63
GL890937 52,298 41
GL890926 50,456 50
GL890920 49,697 33
GL890960 49,163 43
GL890908 48,743 41
GL890950 47,066 43
GL890923 44,429 33
GL890935 37,840 32
GL890903 36,887 29
GL890901 35,394 39
GL890958 33,597 24
GL890830 31,990 30
GL890952 31,031 31
GL890906 30,987 28
GL890921 30,618 26
GL890928 30,050 24
GL890962 29,992 32
GL890922 28,897 24
GL890871 26,224 26
GL890911 24,792 22
GL890919 24,250 24
GL890932 22,296 19
GL890933 21,517 24
GL890955 20,279 19
GL890855 20,200 22
GL890949 19,814 15
GL890831 19,517 11
GL890925 19,246 15
GL890834 17,139 12
GL890972 16,120 15
GL890957 15,430 13
GL890882 14,717 11
GL890959 13,630 14
GL890845 13,490 11
GL890865 12,924 13
GL890842 12,583 9
GL890938 11,939 8
GL890902 11,539 10
GL890905 11,460 8
GL890844 11,068 11
GL890943 10,391 2
GL890817 9,408 11
GL890912 9,318 8
GL890850 9,058 8
GL890857 9,045 6
GL890888 9,041 8
GL890853 8,323 7
GL890826 8,295 11
GL890859 8,019 9
GL890936 7,686 4
GL890847 7,098 5
GL890961 7,010 8
GL890858 6,826 10
GL890884 6,754 7
GL890846 6,620 6
GL890909 5,934 1
GL890821 5,926 6
GL890900 5,703 4
GL890849 5,695 5
GL890860 5,566 5
GL890835 5,482 6
GL890863 5,242 1
GL890951 5,153 5
GL890856 4,951 6
GL890894 4,884 3
GL890861 4,592 5
GL890864 4,466 4
GL890963 4,444 4
GL890862 4,290 4
GL890866 3,963 4
GL890891 3,739 5
GL890877 3,556 3
GL890867 3,348 5
GL890868 3,240 3
GL890896 3,234 3
GL890886 3,136 4
GL890870 3,102 3
GL890887 3,053 5
GL890869 2,978 7
GL890837 2,925 3
GL890889 2,811 3
GL890947 2,668 2
GL890915 2,661 1
GL890872 2,546 1
GL890875 2,438 1
GL890916 2,362 5
GL890890 2,226 1
GL890883 2,208 3
GL890876 2,093 2
GL890878 1,830 3
GL890818 1,821 3
GL890892 1,819 1
GL890879 1,781 1
GL890881 1,687 3
GL890904 1,646 1
GL890880 1,513 0
GL890910 1,435 3
GL890822 1,421 0
GL890824 1,406 2
GL890897 1,391 3
GL890836 1,383 3
GL890885 1,378 2
GL890913 1,277 2
GL890895 1,185 0
GL890899 1,179 0
GL890893 1,174 0
GL890898 1,161 2
GL890917 1,085 1
GL890914 1,069 1
GL890854 1,049 3
GL890918 1,019 2
Total 8,478,612 7,531
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000211815.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000211815.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000211815.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000211815.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000211815.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000211815.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000211815.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000211815.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000211815.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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