cyanobase » [Oscillatoria] [scillatoria] sp. PCC 6506

[Oscillatoria] [scillatoria] sp. PCC 6506

Summary

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Data source name GCA_000180455.1
Full name [Oscillatoria] [scillatoria] sp. PCC 6506 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.

Genome Information

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Chromosomes
Name Size (bp) Genes
CACA01000344 109,266 106
CACA01000349 93,564 83
CACA01000348 89,619 49
CACA01000323 80,982 70
CACA01000310 78,383 96
CACA01000336 77,183 63
CACA01000141 74,207 55
CACA01000316 71,675 53
CACA01000364 70,044 53
CACA01000373 64,062 57
CACA01000271 62,907 46
CACA01000313 62,651 62
CACA01000130 62,548 51
CACA01000370 61,676 28
CACA01000305 61,115 55
CACA01000317 56,928 46
CACA01000001 56,031 64
CACA01000267 55,346 48
CACA01000351 55,000 45
CACA01000075 54,879 41
CACA01000265 54,355 49
CACA01000315 54,340 63
CACA01000144 53,420 45
CACA01000374 53,342 48
CACA01000283 53,239 52
CACA01000329 53,198 51
CACA01000304 53,134 52
CACA01000266 50,582 42
CACA01000292 49,129 64
CACA01000330 48,128 26
CACA01000129 48,090 40
CACA01000301 47,212 42
CACA01000326 47,148 38
CACA01000030 46,897 38
CACA01000097 45,368 47
CACA01000288 44,679 39
CACA01000361 44,289 43
CACA01000243 44,283 41
CACA01000098 44,131 39
CACA01000083 43,730 38
CACA01000084 43,719 70
CACA01000128 43,601 31
CACA01000024 42,930 30
CACA01000353 42,753 29
CACA01000105 42,430 50
CACA01000312 40,935 27
CACA01000352 40,380 42
CACA01000318 39,485 34
CACA01000314 39,379 36
CACA01000300 39,322 32
CACA01000107 39,310 38
CACA01000356 39,287 33
CACA01000221 38,775 40
CACA01000091 37,590 36
CACA01000287 36,715 28
CACA01000375 36,115 43
CACA01000285 36,005 31
CACA01000040 35,979 30
CACA01000295 35,105 41
CACA01000009 34,958 33
CACA01000056 34,412 23
CACA01000281 34,383 31
CACA01000131 34,328 28
CACA01000264 34,313 38
CACA01000219 34,090 26
CACA01000296 34,005 29
CACA01000289 33,911 37
CACA01000218 33,486 25
CACA01000306 33,293 26
CACA01000343 32,609 26
CACA01000055 32,592 40
CACA01000273 32,516 36
CACA01000003 32,362 25
CACA01000299 32,344 27
CACA01000278 32,079 16
CACA01000324 31,929 32
CACA01000359 31,506 32
CACA01000103 30,417 27
CACA01000096 30,183 26
CACA01000308 29,837 31
CACA01000321 29,638 19
CACA01000280 29,366 31
CACA01000071 29,267 26
CACA01000369 28,910 20
CACA01000269 27,783 20
CACA01000263 27,739 22
CACA01000110 26,821 14
CACA01000372 26,565 26
CACA01000277 26,127 22
CACA01000284 25,550 19
CACA01000334 25,284 22
CACA01000298 25,153 28
CACA01000181 25,121 17
CACA01000368 25,050 25
CACA01000176 24,588 26
CACA01000111 24,568 17
CACA01000189 24,532 28
CACA01000060 24,237 22
CACA01000363 24,071 26
CACA01000077 23,779 21
CACA01000358 23,755 17
CACA01000365 23,710 23
CACA01000106 23,185 12
CACA01000092 23,102 21
CACA01000354 22,964 25
CACA01000034 22,870 13
CACA01000225 22,649 26
CACA01000125 22,109 24
CACA01000340 22,099 21
CACA01000338 22,094 22
CACA01000227 22,020 20
CACA01000037 22,006 22
CACA01000251 21,825 18
CACA01000257 21,807 22
CACA01000023 21,794 32
CACA01000290 21,723 15
CACA01000322 21,244 11
CACA01000016 20,735 20
CACA01000307 20,665 19
CACA01000192 20,443 17
CACA01000335 20,411 28
CACA01000223 20,406 21
CACA01000341 20,179 25
CACA01000275 19,509 17
CACA01000041 19,337 14
CACA01000214 19,113 21
CACA01000048 18,929 16
CACA01000255 18,749 19
CACA01000162 18,473 19
CACA01000297 18,368 20
CACA01000311 18,327 21
CACA01000337 18,214 15
CACA01000164 18,199 18
CACA01000081 17,922 21
CACA01000327 17,893 16
CACA01000108 17,742 12
CACA01000346 17,683 17
CACA01000043 17,679 3
CACA01000138 17,645 17
CACA01000165 17,414 11
CACA01000320 17,336 20
CACA01000104 17,149 13
CACA01000099 17,102 14
CACA01000146 17,094 9
CACA01000021 17,090 16
CACA01000360 16,856 13
CACA01000101 16,454 8
CACA01000238 16,412 10
CACA01000142 16,324 15
CACA01000205 16,184 17
CACA01000236 15,994 11
CACA01000157 15,582 11
CACA01000347 15,512 8
CACA01000019 15,268 10
CACA01000072 14,673 9
CACA01000080 14,579 13
CACA01000286 14,510 12
CACA01000113 14,486 6
CACA01000357 14,421 10
CACA01000200 14,332 14
CACA01000216 13,937 12
CACA01000059 13,862 14
CACA01000124 13,852 9
CACA01000143 13,836 17
CACA01000350 13,835 10
CACA01000276 13,514 8
CACA01000029 13,295 15
CACA01000201 13,242 15
CACA01000210 13,207 15
CACA01000015 13,136 13
CACA01000355 12,997 14
CACA01000089 12,896 11
CACA01000011 12,827 15
CACA01000088 12,788 11
CACA01000268 12,651 13
CACA01000254 12,574 15
CACA01000123 12,515 10
CACA01000182 12,399 9
CACA01000082 12,240 12
CACA01000328 12,135 12
CACA01000090 12,006 14
CACA01000183 11,636 15
CACA01000240 11,538 11
CACA01000198 11,281 12
CACA01000234 11,153 16
CACA01000274 11,080 20
CACA01000186 10,799 15
CACA01000331 10,739 6
CACA01000371 10,671 9
CACA01000303 10,577 9
CACA01000339 10,522 13
CACA01000136 10,458 14
CACA01000177 10,449 10
CACA01000061 10,265 14
CACA01000212 10,172 13
CACA01000209 9,970 8
CACA01000087 9,926 7
CACA01000180 9,867 10
CACA01000279 9,729 6
CACA01000239 9,598 9
CACA01000252 9,575 9
CACA01000170 9,363 11
CACA01000070 9,343 10
CACA01000002 9,277 7
CACA01000178 9,156 7
CACA01000033 9,097 10
CACA01000031 9,054 8
CACA01000345 9,049 0
CACA01000259 9,023 12
CACA01000028 9,020 10
CACA01000253 8,945 5
CACA01000237 8,939 10
CACA01000010 8,794 9
CACA01000294 8,777 10
CACA01000032 8,571 7
CACA01000027 8,312 6
CACA01000137 8,299 7
CACA01000014 8,244 9
CACA01000051 8,158 14
CACA01000102 7,972 9
CACA01000226 7,956 8
CACA01000325 7,911 8
CACA01000067 7,910 8
CACA01000208 7,813 4
CACA01000247 7,696 8
CACA01000145 7,604 5
CACA01000213 7,550 8
CACA01000109 7,480 4
CACA01000293 7,391 3
CACA01000191 7,292 8
CACA01000220 7,256 3
CACA01000230 7,256 9
CACA01000362 7,114 9
CACA01000140 7,078 4
CACA01000256 7,075 8
CACA01000242 7,053 8
CACA01000235 6,914 1
CACA01000367 6,905 4
CACA01000333 6,752 7
CACA01000199 6,741 7
CACA01000134 6,702 6
CACA01000073 6,597 6
CACA01000150 6,528 13
CACA01000038 6,505 2
CACA01000025 6,495 8
CACA01000094 6,123 1
CACA01000167 6,038 5
CACA01000095 6,037 6
CACA01000332 6,033 2
CACA01000250 5,934 5
CACA01000222 5,931 6
CACA01000248 5,908 5
CACA01000093 5,804 3
CACA01000100 5,785 7
CACA01000022 5,778 7
CACA01000020 5,639 5
CACA01000085 5,581 3
CACA01000066 5,515 5
CACA01000079 5,507 1
CACA01000217 5,167 6
CACA01000126 5,165 1
CACA01000232 5,111 6
CACA01000053 4,977 2
CACA01000049 4,916 3
CACA01000155 4,824 7
CACA01000052 4,709 1
CACA01000184 4,671 8
CACA01000046 4,657 3
CACA01000231 4,505 4
CACA01000047 4,488 5
CACA01000272 4,419 4
CACA01000249 4,418 4
CACA01000058 4,414 3
CACA01000122 4,392 8
CACA01000115 4,340 3
CACA01000035 4,340 7
CACA01000163 4,329 4
CACA01000172 4,287 2
CACA01000179 4,243 5
CACA01000246 4,208 4
CACA01000152 4,083 5
CACA01000012 4,052 2
CACA01000342 3,963 6
CACA01000117 3,949 6
CACA01000063 3,930 4
CACA01000076 3,917 5
CACA01000173 3,904 4
CACA01000224 3,865 2
CACA01000005 3,766 3
CACA01000196 3,663 2
CACA01000366 3,529 5
CACA01000050 3,496 2
CACA01000069 3,494 3
CACA01000036 3,317 1
CACA01000054 3,309 3
CACA01000302 3,298 3
CACA01000006 3,247 6
CACA01000078 2,992 1
CACA01000270 2,986 2
CACA01000045 2,910 3
CACA01000376 2,902 1
CACA01000206 2,880 1
CACA01000119 2,847 3
CACA01000149 2,719 2
CACA01000244 2,705 5
CACA01000168 2,674 1
CACA01000260 2,616 4
CACA01000245 2,609 5
CACA01000175 2,569 1
CACA01000026 2,533 2
CACA01000004 2,518 0
CACA01000120 2,378 2
CACA01000132 2,359 4
CACA01000319 2,312 4
CACA01000013 2,306 1
CACA01000147 2,304 3
CACA01000148 2,259 6
CACA01000261 2,204 4
CACA01000074 2,124 2
CACA01000203 2,109 2
CACA01000139 2,081 3
CACA01000202 2,071 2
CACA01000065 2,066 1
CACA01000309 2,053 1
CACA01000064 1,989 1
CACA01000007 1,969 0
CACA01000174 1,950 2
CACA01000187 1,942 3
CACA01000153 1,912 1
CACA01000039 1,901 2
CACA01000262 1,832 4
CACA01000195 1,814 2
CACA01000211 1,758 2
CACA01000161 1,717 2
CACA01000121 1,695 0
CACA01000160 1,677 1
CACA01000258 1,532 1
CACA01000291 1,521 2
CACA01000018 1,512 2
CACA01000044 1,470 2
CACA01000241 1,436 0
CACA01000133 1,408 1
CACA01000204 1,400 1
CACA01000166 1,399 0
CACA01000215 1,390 1
CACA01000112 1,389 1
CACA01000057 1,383 1
CACA01000135 1,319 1
CACA01000127 1,311 1
CACA01000154 1,297 0
CACA01000114 1,294 1
CACA01000116 1,284 2
CACA01000086 1,267 1
CACA01000207 1,213 1
CACA01000377 1,152 1
CACA01000156 1,089 1
CACA01000008 1,068 1
CACA01000171 1,063 2
CACA01000197 1,008 0
CACA01000228 959 0
CACA01000118 874 1
CACA01000190 837 0
CACA01000042 837 0
CACA01000151 837 1
CACA01000233 829 0
CACA01000193 809 1
CACA01000185 790 0
CACA01000194 770 1
CACA01000169 756 1
CACA01000188 704 1
CACA01000068 636 1
CACA01000282 632 1
CACA01000159 560 0
CACA01000229 545 0
CACA01000017 524 0
CACA01000158 521 0
CACA01000062 521 0
Total 6,676,705 5,965
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000180455.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000180455.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000180455.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000180455.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000180455.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000180455.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000180455.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000180455.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000180455.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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