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cyanobase » Synechococcus sp. CB0205

Synechococcus sp. CB0205

Summary

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Data source name GCA_000179255.1
Full name Synechococcus sp. CB0205
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
ADXM01000022 165,794 0
ADXM01000049 145,282 0
ADXM01000046 128,682 0
ADXM01000050 97,590 0
ADXM01000020 89,533 0
ADXM01000021 78,715 0
ADXM01000015 78,252 0
ADXM01000051 78,164 0
ADXM01000035 72,649 0
ADXM01000057 72,295 0
ADXM01000019 71,598 0
ADXM01000008 66,412 0
ADXM01000061 64,768 0
ADXM01000044 63,410 0
ADXM01000070 60,284 0
ADXM01000043 58,248 0
ADXM01000034 57,967 0
ADXM01000013 57,670 0
ADXM01000048 56,387 0
ADXM01000067 48,786 0
ADXM01000052 43,921 0
ADXM01000062 40,282 0
ADXM01000025 38,238 0
ADXM01000056 36,903 0
ADXM01000042 35,165 0
ADXM01000007 34,651 0
ADXM01000068 31,876 0
ADXM01000031 29,421 0
ADXM01000029 27,943 0
ADXM01000012 25,614 0
ADXM01000027 25,326 0
ADXM01000036 24,789 0
ADXM01000065 23,477 0
ADXM01000069 23,083 0
ADXM01000014 22,805 0
ADXM01000024 21,676 0
ADXM01000064 20,849 0
ADXM01000011 20,461 0
ADXM01000041 17,199 0
ADXM01000055 15,478 0
ADXM01000038 15,239 0
ADXM01000054 14,705 0
ADXM01000032 14,293 0
ADXM01000016 14,127 0
ADXM01000026 13,415 0
ADXM01000059 12,541 0
ADXM01000047 11,814 0
ADXM01000040 10,555 0
ADXM01000030 10,168 0
ADXM01000023 9,748 0
ADXM01000039 9,636 0
ADXM01000063 9,354 0
ADXM01000066 9,311 0
ADXM01000028 8,308 0
ADXM01000033 8,059 0
ADXM01000060 6,474 0
ADXM01000017 6,355 0
ADXM01000009 6,306 0
ADXM01000037 6,129 0
ADXM01000045 5,921 0
ADXM01000010 5,718 0
ADXM01000018 5,224 0
ADXM01000053 5,113 0
ADXM01000076 4,511 0
ADXM01000071 4,409 0
ADXM01000078 4,084 0
ADXM01000001 3,741 0
ADXM01000075 3,248 0
ADXM01000074 3,160 0
ADXM01000058 2,525 0
ADXM01000072 2,461 0
ADXM01000073 1,453 0
ADXM01000003 1,363 0
ADXM01000002 1,358 0
ADXM01000004 1,274 0
ADXM01000005 1,219 0
ADXM01000077 1,188 0
ADXM01000006 1,158 0
Total 2,427,308 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000179255.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000179255.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000179255.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000179255.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000179255.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000179255.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000179255.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000179255.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000179255.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000179255.1/genes/interpro.txt (File format)

MicrobeBase