cyanobase » Synechococcus sp. CB0101

Synechococcus sp. CB0101

Summary

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Data source name GCA_000179235.1
Full name Synechococcus sp. CB0101 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
ADXL01000057 118,199 0
ADXL01000050 114,237 0
ADXL01000055 113,316 0
ADXL01000072 101,105 0
ADXL01000060 97,730 0
ADXL01000084 93,000 0
ADXL01000066 88,288 0
ADXL01000039 86,732 0
ADXL01000054 84,087 0
ADXL01000093 78,519 0
ADXL01000044 78,058 0
ADXL01000086 76,380 0
ADXL01000091 72,764 0
ADXL01000087 64,135 0
ADXL01000056 62,239 0
ADXL01000071 60,200 0
ADXL01000051 56,106 0
ADXL01000028 55,697 0
ADXL01000079 55,402 0
ADXL01000085 55,011 0
ADXL01000027 54,104 0
ADXL01000062 47,117 0
ADXL01000041 45,313 0
ADXL01000068 42,547 0
ADXL01000031 41,069 0
ADXL01000042 36,424 0
ADXL01000065 35,658 0
ADXL01000083 34,059 0
ADXL01000089 31,859 0
ADXL01000049 31,607 0
ADXL01000058 31,133 0
ADXL01000034 30,834 0
ADXL01000024 29,081 0
ADXL01000070 27,826 0
ADXL01000059 26,212 0
ADXL01000067 23,813 0
ADXL01000032 22,377 0
ADXL01000090 21,409 0
ADXL01000046 20,637 0
ADXL01000052 19,962 0
ADXL01000035 19,672 0
ADXL01000021 19,538 0
ADXL01000088 19,122 0
ADXL01000030 19,104 0
ADXL01000014 18,029 0
ADXL01000081 17,567 0
ADXL01000082 17,138 0
ADXL01000073 16,918 0
ADXL01000063 15,464 0
ADXL01000038 14,009 0
ADXL01000074 13,503 0
ADXL01000040 13,234 0
ADXL01000037 12,733 0
ADXL01000025 11,914 0
ADXL01000061 11,616 0
ADXL01000036 10,323 0
ADXL01000077 10,194 0
ADXL01000033 10,062 0
ADXL01000018 9,731 0
ADXL01000026 9,078 0
ADXL01000016 8,468 0
ADXL01000029 8,050 0
ADXL01000053 7,912 0
ADXL01000020 7,456 0
ADXL01000075 7,028 0
ADXL01000069 6,550 0
ADXL01000045 5,826 0
ADXL01000011 5,169 0
ADXL01000048 5,082 0
ADXL01000022 4,432 0
ADXL01000064 4,371 0
ADXL01000078 4,223 0
ADXL01000019 3,964 0
ADXL01000015 3,878 0
ADXL01000002 3,834 0
ADXL01000010 3,730 0
ADXL01000043 3,634 0
ADXL01000080 3,375 0
ADXL01000092 3,366 0
ADXL01000023 3,148 0
ADXL01000001 2,691 0
ADXL01000007 2,419 0
ADXL01000013 2,400 0
ADXL01000009 2,322 0
ADXL01000076 2,307 0
ADXL01000008 2,206 0
ADXL01000004 2,131 0
ADXL01000094 2,100 0
ADXL01000005 2,096 0
ADXL01000006 2,065 0
ADXL01000003 2,013 0
ADXL01000047 1,747 0
ADXL01000012 1,628 0
ADXL01000017 1,579 0
Total 2,686,395 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000179235.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000179235.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000179235.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000179235.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000179235.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000179235.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000179235.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000179235.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000179235.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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