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cyanobase » Arthrospira sp. PCC 8005

Arthrospira sp. PCC 8005

Summary

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Data source name GCA_000176895.2
Full name Arthrospira sp. PCC 8005
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Arthrospira.

Genome Information

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Chromosomes
Name Size (bp) Genes
CAFN01000017 172,295 162
CAFN01000676 162,395 125
CAFN01000001 143,976 139
CAFN01000656 127,863 159
CAFN01000047 126,399 153
CAFN01000061 119,247 102
CAFN01000686 112,876 107
CAFN01000057 110,046 98
CAFN01000673 104,495 125
CAFN01000049 100,492 85
CAFN01000052 96,140 87
CAFN01000071 94,703 85
CAFN01000590 92,963 106
CAFN01000357 88,358 94
CAFN01000059 86,694 78
CAFN01000063 85,515 97
CAFN01000665 81,942 81
CAFN01000157 81,364 58
CAFN01000235 79,929 82
CAFN01000062 79,768 81
CAFN01000051 78,162 77
CAFN01000056 73,949 68
CAFN01000368 73,687 62
CAFN01000523 73,445 70
CAFN01000050 69,648 64
CAFN01000623 66,240 51
CAFN01000670 65,934 73
CAFN01000113 61,844 45
CAFN01000679 60,780 57
CAFN01000008 59,873 69
CAFN01000335 58,434 65
CAFN01000044 57,995 62
CAFN01000677 57,732 44
CAFN01000667 57,273 53
CAFN01000534 55,028 49
CAFN01000664 54,726 48
CAFN01000301 54,138 49
CAFN01000036 53,153 45
CAFN01000035 53,100 70
CAFN01000024 51,492 53
CAFN01000666 49,031 50
CAFN01000065 46,917 41
CAFN01000124 46,593 44
CAFN01000645 45,904 33
CAFN01000018 43,494 36
CAFN01000224 41,492 46
CAFN01000021 40,938 48
CAFN01000312 40,047 38
CAFN01000038 39,696 42
CAFN01000060 38,811 43
CAFN01000070 38,703 35
CAFN01000545 37,285 39
CAFN01000068 34,968 43
CAFN01000014 34,511 28
CAFN01000054 34,294 39
CAFN01000268 33,554 29
CAFN01000003 33,055 56
CAFN01000689 32,903 41
CAFN01000112 32,500 28
CAFN01000058 30,498 32
CAFN01000037 30,308 26
CAFN01000246 29,762 31
CAFN01000168 29,689 28
CAFN01000022 29,585 24
CAFN01000015 29,473 25
CAFN01000675 29,223 27
CAFN01000048 29,154 18
CAFN01000011 29,039 17
CAFN01000020 27,636 27
CAFN01000012 27,085 20
CAFN01000501 26,330 23
CAFN01000601 24,377 31
CAFN01000684 23,751 26
CAFN01000668 23,528 24
CAFN01000678 23,131 23
CAFN01000135 23,020 19
CAFN01000179 22,992 18
CAFN01000579 22,014 18
CAFN01000512 20,446 23
CAFN01000146 19,748 19
CAFN01000029 19,571 16
CAFN01000042 19,285 19
CAFN01000683 19,071 19
CAFN01000685 19,063 20
CAFN01000026 18,514 18
CAFN01000681 18,073 8
CAFN01000663 17,759 19
CAFN01000323 17,433 29
CAFN01000032 16,375 19
CAFN01000033 15,766 16
CAFN01000334 13,848 8
CAFN01000002 13,363 12
CAFN01000027 13,113 11
CAFN01000101 13,060 15
CAFN01000010 12,429 14
CAFN01000412 12,419 13
CAFN01000660 12,373 10
CAFN01000031 12,308 21
CAFN01000053 12,022 14
CAFN01000007 11,886 13
CAFN01000687 11,876 10
CAFN01000279 11,602 15
CAFN01000005 11,554 13
CAFN01000023 11,349 12
CAFN01000401 11,015 9
CAFN01000004 10,932 14
CAFN01000479 10,811 9
CAFN01000030 10,640 14
CAFN01000568 10,497 8
CAFN01000672 10,110 8
CAFN01000682 9,975 9
CAFN01000468 9,620 10
CAFN01000692 9,043 16
CAFN01000006 9,000 9
CAFN01000212 8,958 17
CAFN01000025 8,834 3
CAFN01000064 8,560 7
CAFN01000661 8,555 10
CAFN01000019 8,126 7
CAFN01000066 8,002 8
CAFN01000079 7,918 9
CAFN01000691 7,665 6
CAFN01000045 7,305 9
CAFN01000262 7,269 6
CAFN01000612 7,160 5
CAFN01000290 7,125 10
CAFN01000055 7,081 7
CAFN01000046 6,903 9
CAFN01000427 6,681 6
CAFN01000556 6,488 9
CAFN01000535 6,469 9
CAFN01000434 6,454 9
CAFN01000688 6,385 5
CAFN01000445 6,299 7
CAFN01000557 5,988 5
CAFN01000662 5,836 6
CAFN01000016 5,819 5
CAFN01000690 5,788 10
CAFN01000257 5,749 6
CAFN01000175 5,679 6
CAFN01000379 5,643 6
CAFN01000013 5,636 5
CAFN01000223 5,632 5
CAFN01000423 5,585 7
CAFN01000680 5,526 6
CAFN01000671 5,409 7
CAFN01000620 5,034 5
CAFN01000634 5,019 4
CAFN01000127 4,867 4
CAFN01000353 4,802 7
CAFN01000674 4,795 9
CAFN01000310 4,686 2
CAFN01000201 4,634 6
CAFN01000495 4,610 3
CAFN01000043 4,508 5
CAFN01000473 4,431 3
CAFN01000373 4,403 3
CAFN01000390 4,325 7
CAFN01000669 4,294 4
CAFN01000558 4,284 3
CAFN01000128 4,232 4
CAFN01000190 4,203 7
CAFN01000183 4,122 0
CAFN01000009 3,986 5
CAFN01000076 3,959 5
CAFN01000092 3,957 8
CAFN01000085 3,909 4
CAFN01000041 3,885 3
CAFN01000553 3,875 3
CAFN01000034 3,868 4
CAFN01000067 3,834 4
CAFN01000090 3,768 6
CAFN01000459 3,739 3
CAFN01000210 3,731 2
CAFN01000217 3,714 3
CAFN01000346 3,695 6
CAFN01000254 3,644 2
CAFN01000171 3,629 3
CAFN01000421 3,604 5
CAFN01000436 3,600 2
CAFN01000381 3,562 5
CAFN01000161 3,474 3
CAFN01000561 3,464 2
CAFN01000040 3,435 2
CAFN01000616 3,398 4
CAFN01000039 3,381 4
CAFN01000256 3,377 5
CAFN01000422 3,312 3
CAFN01000199 3,305 1
CAFN01000100 3,273 4
CAFN01000192 3,262 1
CAFN01000466 3,246 4
CAFN01000069 3,189 4
CAFN01000594 3,152 6
CAFN01000480 3,127 7
CAFN01000410 3,080 1
CAFN01000415 3,077 4
CAFN01000099 3,027 5
CAFN01000272 3,021 3
CAFN01000154 3,017 4
CAFN01000336 3,016 4
CAFN01000490 3,009 3
CAFN01000286 3,006 6
CAFN01000098 3,000 1
CAFN01000231 2,999 3
CAFN01000503 2,993 4
CAFN01000458 2,992 5
CAFN01000366 2,986 3
CAFN01000114 2,938 3
CAFN01000504 2,935 5
CAFN01000455 2,907 10
CAFN01000416 2,891 1
CAFN01000173 2,890 3
CAFN01000170 2,858 3
CAFN01000506 2,822 1
CAFN01000097 2,804 3
CAFN01000585 2,781 2
CAFN01000147 2,769 4
CAFN01000362 2,763 3
CAFN01000237 2,729 4
CAFN01000075 2,725 3
CAFN01000117 2,715 2
CAFN01000359 2,704 3
CAFN01000195 2,658 4
CAFN01000083 2,647 6
CAFN01000441 2,617 2
CAFN01000247 2,600 2
CAFN01000225 2,590 1
CAFN01000541 2,584 3
CAFN01000453 2,575 2
CAFN01000624 2,526 3
CAFN01000358 2,515 2
CAFN01000028 2,498 6
CAFN01000148 2,470 0
CAFN01000380 2,452 2
CAFN01000226 2,452 3
CAFN01000122 2,451 1
CAFN01000319 2,445 0
CAFN01000566 2,414 2
CAFN01000077 2,346 3
CAFN01000180 2,337 1
CAFN01000350 2,324 2
CAFN01000446 2,303 8
CAFN01000388 2,295 2
CAFN01000239 2,283 1
CAFN01000502 2,276 1
CAFN01000447 2,274 2
CAFN01000200 2,265 2
CAFN01000297 2,262 4
CAFN01000105 2,262 2
CAFN01000129 2,234 1
CAFN01000444 2,224 2
CAFN01000278 2,215 0
CAFN01000080 2,213 1
CAFN01000639 2,208 3
CAFN01000609 2,205 4
CAFN01000539 2,204 2
CAFN01000527 2,195 4
CAFN01000363 2,192 2
CAFN01000633 2,176 5
CAFN01000313 2,175 2
CAFN01000137 2,145 0
CAFN01000228 2,140 1
CAFN01000509 2,107 1
CAFN01000298 2,101 1
CAFN01000632 2,098 3
CAFN01000294 2,092 1
CAFN01000542 2,086 1
CAFN01000513 2,052 4
CAFN01000510 2,031 1
CAFN01000188 2,024 1
CAFN01000094 2,012 1
CAFN01000291 1,996 0
CAFN01000581 1,947 4
CAFN01000367 1,942 1
CAFN01000352 1,915 1
CAFN01000567 1,907 1
CAFN01000405 1,902 2
CAFN01000426 1,878 2
CAFN01000598 1,874 0
CAFN01000457 1,869 2
CAFN01000116 1,868 1
CAFN01000491 1,854 0
CAFN01000285 1,850 1
CAFN01000288 1,844 2
CAFN01000106 1,842 4
CAFN01000528 1,825 1
CAFN01000329 1,819 2
CAFN01000486 1,812 1
CAFN01000265 1,803 1
CAFN01000181 1,800 1
CAFN01000424 1,799 1
CAFN01000220 1,789 2
CAFN01000191 1,784 2
CAFN01000158 1,779 1
CAFN01000569 1,770 0
CAFN01000431 1,765 0
CAFN01000487 1,752 0
CAFN01000578 1,748 2
CAFN01000078 1,727 2
CAFN01000132 1,713 2
CAFN01000138 1,712 0
CAFN01000550 1,692 2
CAFN01000281 1,689 0
CAFN01000489 1,687 1
CAFN01000263 1,684 3
CAFN01000408 1,682 1
CAFN01000307 1,681 1
CAFN01000166 1,676 0
CAFN01000095 1,674 6
CAFN01000617 1,666 3
CAFN01000653 1,663 1
CAFN01000454 1,659 4
CAFN01000411 1,659 3
CAFN01000140 1,645 1
CAFN01000494 1,643 0
CAFN01000277 1,637 2
CAFN01000206 1,637 1
CAFN01000121 1,635 0
CAFN01000605 1,630 2
CAFN01000230 1,626 0
CAFN01000613 1,618 0
CAFN01000182 1,612 1
CAFN01000186 1,606 0
CAFN01000326 1,596 5
CAFN01000096 1,589 2
CAFN01000386 1,583 1
CAFN01000240 1,578 1
CAFN01000332 1,569 1
CAFN01000536 1,565 1
CAFN01000520 1,555 1
CAFN01000435 1,553 0
CAFN01000657 1,550 3
CAFN01000531 1,543 0
CAFN01000103 1,538 1
CAFN01000215 1,536 3
CAFN01000264 1,529 1
CAFN01000073 1,513 5
CAFN01000604 1,512 2
CAFN01000592 1,496 1
CAFN01000271 1,494 2
CAFN01000647 1,492 1
CAFN01000370 1,483 2
CAFN01000125 1,479 0
CAFN01000152 1,478 1
CAFN01000484 1,477 1
CAFN01000150 1,475 1
CAFN01000508 1,470 2
CAFN01000560 1,458 3
CAFN01000576 1,452 2
CAFN01000074 1,445 2
CAFN01000571 1,441 2
CAFN01000462 1,441 1
CAFN01000563 1,438 2
CAFN01000515 1,435 3
CAFN01000348 1,433 2
CAFN01000120 1,429 1
CAFN01000250 1,421 1
CAFN01000440 1,420 0
CAFN01000320 1,416 2
CAFN01000564 1,409 1
CAFN01000196 1,398 1
CAFN01000650 1,386 2
CAFN01000270 1,383 0
CAFN01000082 1,376 2
CAFN01000267 1,370 1
CAFN01000172 1,367 2
CAFN01000165 1,366 4
CAFN01000255 1,366 0
CAFN01000482 1,360 1
CAFN01000081 1,354 3
CAFN01000089 1,342 1
CAFN01000460 1,341 1
CAFN01000174 1,330 3
CAFN01000309 1,326 1
CAFN01000409 1,323 3
CAFN01000465 1,320 2
CAFN01000072 1,319 2
CAFN01000413 1,307 2
CAFN01000428 1,306 0
CAFN01000507 1,299 0
CAFN01000088 1,297 3
CAFN01000296 1,294 3
CAFN01000311 1,288 0
CAFN01000406 1,282 4
CAFN01000282 1,282 1
CAFN01000351 1,278 3
CAFN01000208 1,270 3
CAFN01000345 1,267 2
CAFN01000107 1,266 1
CAFN01000651 1,260 1
CAFN01000418 1,258 0
CAFN01000354 1,257 0
CAFN01000269 1,257 1
CAFN01000302 1,252 0
CAFN01000204 1,248 0
CAFN01000126 1,248 0
CAFN01000209 1,233 3
CAFN01000207 1,232 1
CAFN01000475 1,231 0
CAFN01000646 1,223 1
CAFN01000198 1,219 1
CAFN01000238 1,215 3
CAFN01000365 1,215 2
CAFN01000552 1,215 0
CAFN01000229 1,193 2
CAFN01000374 1,190 2
CAFN01000626 1,190 2
CAFN01000628 1,188 3
CAFN01000160 1,186 0
CAFN01000600 1,183 2
CAFN01000425 1,181 1
CAFN01000316 1,172 2
CAFN01000526 1,172 2
CAFN01000260 1,169 0
CAFN01000266 1,156 2
CAFN01000547 1,153 1
CAFN01000583 1,152 4
CAFN01000492 1,151 1
CAFN01000589 1,145 0
CAFN01000540 1,144 3
CAFN01000159 1,141 1
CAFN01000331 1,139 1
CAFN01000644 1,133 2
CAFN01000544 1,124 1
CAFN01000218 1,121 0
CAFN01000555 1,113 1
CAFN01000130 1,102 2
CAFN01000091 1,101 1
CAFN01000500 1,094 3
CAFN01000655 1,089 1
CAFN01000417 1,089 0
CAFN01000317 1,089 2
CAFN01000640 1,085 2
CAFN01000219 1,084 1
CAFN01000347 1,077 3
CAFN01000451 1,075 1
CAFN01000554 1,071 0
CAFN01000214 1,067 1
CAFN01000398 1,065 2
CAFN01000471 1,065 1
CAFN01000111 1,063 1
CAFN01000549 1,060 0
CAFN01000433 1,058 1
CAFN01000202 1,055 0
CAFN01000497 1,054 4
CAFN01000339 1,048 2
CAFN01000641 1,043 1
CAFN01000478 1,042 1
CAFN01000414 1,040 1
CAFN01000635 1,038 0
CAFN01000610 1,036 0
CAFN01000606 1,029 1
CAFN01000151 1,025 3
CAFN01000371 1,024 0
CAFN01000213 1,024 3
CAFN01000622 1,023 0
CAFN01000631 1,011 1
CAFN01000333 1,007 0
CAFN01000104 1,006 1
CAFN01000588 1,005 1
CAFN01000131 1,004 1
CAFN01000648 997 3
CAFN01000395 996 1
CAFN01000149 993 0
CAFN01000369 992 2
CAFN01000399 990 0
CAFN01000376 982 1
CAFN01000529 980 1
CAFN01000372 977 2
CAFN01000419 975 1
CAFN01000442 971 1
CAFN01000187 970 1
CAFN01000233 968 1
CAFN01000197 960 1
CAFN01000608 957 3
CAFN01000355 957 1
CAFN01000404 947 1
CAFN01000155 946 1
CAFN01000176 944 1
CAFN01000392 943 2
CAFN01000194 936 0
CAFN01000338 929 1
CAFN01000450 926 3
CAFN01000162 926 1
CAFN01000573 924 1
CAFN01000636 923 2
CAFN01000516 923 2
CAFN01000439 920 1
CAFN01000499 920 2
CAFN01000607 919 1
CAFN01000205 914 0
CAFN01000591 914 2
CAFN01000134 909 1
CAFN01000498 908 2
CAFN01000276 901 0
CAFN01000476 900 2
CAFN01000658 899 2
CAFN01000330 897 2
CAFN01000248 891 1
CAFN01000163 889 1
CAFN01000164 884 0
CAFN01000253 878 0
CAFN01000519 878 0
CAFN01000123 876 0
CAFN01000108 875 0
CAFN01000582 873 0
CAFN01000643 871 2
CAFN01000524 869 1
CAFN01000328 869 0
CAFN01000575 869 1
CAFN01000141 855 0
CAFN01000481 853 1
CAFN01000349 853 1
CAFN01000477 853 2
CAFN01000420 852 0
CAFN01000245 851 0
CAFN01000397 835 1
CAFN01000629 835 0
CAFN01000252 819 1
CAFN01000587 819 0
CAFN01000559 818 1
CAFN01000443 816 0
CAFN01000438 815 0
CAFN01000407 802 1
CAFN01000595 801 1
CAFN01000577 799 1
CAFN01000251 793 1
CAFN01000115 792 0
CAFN01000177 791 0
CAFN01000341 789 1
CAFN01000133 789 1
CAFN01000242 779 0
CAFN01000488 777 0
CAFN01000537 771 2
CAFN01000300 768 1
CAFN01000364 766 1
CAFN01000599 765 1
CAFN01000305 761 3
CAFN01000185 758 0
CAFN01000314 757 0
CAFN01000193 754 1
CAFN01000615 751 0
CAFN01000304 750 1
CAFN01000584 748 1
CAFN01000472 746 0
CAFN01000227 745 0
CAFN01000184 744 1
CAFN01000449 740 1
CAFN01000258 736 1
CAFN01000306 730 2
CAFN01000521 728 1
CAFN01000514 728 2
CAFN01000551 728 2
CAFN01000483 724 2
CAFN01000614 724 2
CAFN01000382 722 2
CAFN01000430 718 1
CAFN01000340 718 0
CAFN01000119 717 1
CAFN01000596 712 2
CAFN01000360 712 1
CAFN01000603 712 1
CAFN01000611 711 2
CAFN01000654 710 0
CAFN01000543 707 2
CAFN01000649 707 1
CAFN01000496 705 1
CAFN01000391 704 1
CAFN01000156 702 1
CAFN01000283 701 1
CAFN01000562 700 2
CAFN01000625 699 1
CAFN01000102 697 0
CAFN01000093 694 2
CAFN01000463 690 0
CAFN01000343 689 2
CAFN01000630 684 1
CAFN01000259 672 0
CAFN01000548 672 1
CAFN01000638 667 0
CAFN01000518 665 0
CAFN01000167 664 0
CAFN01000602 663 1
CAFN01000627 663 2
CAFN01000377 662 0
CAFN01000375 657 0
CAFN01000456 655 0
CAFN01000385 654 1
CAFN01000565 652 3
CAFN01000261 647 0
CAFN01000236 646 0
CAFN01000474 642 0
CAFN01000387 642 0
CAFN01000284 640 0
CAFN01000322 639 0
CAFN01000289 639 1
CAFN01000308 639 0
CAFN01000533 638 0
CAFN01000142 637 0
CAFN01000586 636 0
CAFN01000344 635 0
CAFN01000244 635 1
CAFN01000292 629 1
CAFN01000469 629 1
CAFN01000432 629 0
CAFN01000532 627 2
CAFN01000618 626 1
CAFN01000470 623 0
CAFN01000234 621 1
CAFN01000143 621 0
CAFN01000139 621 2
CAFN01000109 619 0
CAFN01000522 618 0
CAFN01000136 612 2
CAFN01000429 612 0
CAFN01000274 609 2
CAFN01000452 606 0
CAFN01000293 605 0
CAFN01000517 601 1
CAFN01000203 600 0
CAFN01000642 600 1
CAFN01000241 598 1
CAFN01000318 597 0
CAFN01000461 597 1
CAFN01000505 597 0
CAFN01000211 596 0
CAFN01000356 596 0
CAFN01000295 592 1
CAFN01000321 592 0
CAFN01000393 589 2
CAFN01000222 589 0
CAFN01000303 587 2
CAFN01000189 584 0
CAFN01000448 584 2
CAFN01000546 584 0
CAFN01000378 583 0
CAFN01000118 583 0
CAFN01000394 582 1
CAFN01000153 582 1
CAFN01000597 581 0
CAFN01000467 581 1
CAFN01000110 577 2
CAFN01000221 576 1
CAFN01000086 575 1
CAFN01000530 574 0
CAFN01000464 570 1
CAFN01000621 568 1
CAFN01000275 566 0
CAFN01000437 565 0
CAFN01000145 565 1
CAFN01000169 560 1
CAFN01000327 559 0
CAFN01000593 551 2
CAFN01000389 551 1
CAFN01000619 550 1
CAFN01000511 550 1
CAFN01000403 550 0
CAFN01000342 546 1
CAFN01000337 545 0
CAFN01000652 545 1
CAFN01000243 544 0
CAFN01000280 542 0
CAFN01000400 540 1
CAFN01000361 533 0
CAFN01000216 530 0
CAFN01000178 529 0
CAFN01000525 528 0
CAFN01000402 528 1
CAFN01000315 526 1
CAFN01000384 525 1
CAFN01000383 525 1
CAFN01000249 525 0
CAFN01000144 524 1
CAFN01000574 524 1
CAFN01000325 519 0
CAFN01000659 518 1
CAFN01000570 515 0
CAFN01000087 514 1
CAFN01000580 514 0
CAFN01000572 514 0
CAFN01000324 514 0
CAFN01000396 513 0
CAFN01000637 512 0
CAFN01000273 511 0
CAFN01000493 507 1
CAFN01000538 506 0
CAFN01000084 505 2
CAFN01000299 502 0
CAFN01000232 502 1
CAFN01000287 501 1
CAFN01000485 500 0
Total 6,166,364 6,094
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000176895.2 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000176895.2/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000176895.2/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000176895.2/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000176895.2/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000176895.2/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000176895.2/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000176895.2/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000176895.2/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000176895.2/genes/interpro.txt (File format)

MicrobeBase