cyanobase » Raphidiopsis brookii D9

Raphidiopsis brookii D9

Summary

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Data source name GCA_000175855.1
Full name Raphidiopsis brookii D9 External
Taxonomy Lineage Cyanobacteria; Nostocales; Nostocaceae; Raphidiopsis.

Genome Information

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Chromosomes
Name Size (bp) Genes
ACYB01000035 526,794 504
ACYB01000042 272,367 289
ACYB01000046 239,572 265
ACYB01000031 208,236 192
ACYB01000004 143,800 131
ACYB01000037 132,450 118
ACYB01000020 127,752 122
ACYB01000038 126,242 132
ACYB01000029 111,549 110
ACYB01000022 103,025 99
ACYB01000047 99,799 102
ACYB01000007 92,126 78
ACYB01000021 90,655 87
ACYB01000019 86,083 74
ACYB01000006 84,767 78
ACYB01000016 83,531 92
ACYB01000011 71,800 67
ACYB01000036 67,496 59
ACYB01000005 62,177 60
ACYB01000010 61,463 60
ACYB01000040 54,453 48
ACYB01000001 37,575 32
ACYB01000027 32,869 25
ACYB01000017 29,593 28
ACYB01000024 28,497 27
ACYB01000002 27,888 21
ACYB01000008 26,065 30
ACYB01000023 20,392 20
ACYB01000032 16,538 13
ACYB01000033 15,539 15
ACYB01000044 15,071 16
ACYB01000015 12,258 0
ACYB01000012 11,280 4
ACYB01000043 7,566 8
ACYB01000039 6,782 6
ACYB01000028 5,927 6
ACYB01000045 5,796 5
ACYB01000013 5,516 6
ACYB01000018 5,227 4
ACYB01000034 4,458 3
ACYB01000026 3,793 3
ACYB01000041 3,777 2
ACYB01000025 3,757 4
ACYB01000009 3,663 4
ACYB01000030 3,529 4
ACYB01000014 3,517 4
ACYB01000003 3,501 0
Total 3,186,511 3,057
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000175855.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000175855.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000175855.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000175855.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000175855.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000175855.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000175855.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000175855.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000175855.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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