cyanobase » Arthrospira platensis str. Paraca

Arthrospira platensis str. Paraca

Summary

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Data source name GCA_000175415.3
Full name Arthrospira platensis str. Paraca External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Arthrospira.

Genome Information

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Chromosomes
Name Size (bp) Genes
ACSK03000268 297,520 239
ACSK03000267 269,349 233
ACSK03000266 225,449 192
ACSK03000265 170,058 149
ACSK03000264 165,178 150
ACSK03000263 164,208 147
ACSK03000262 158,937 124
ACSK03000261 157,194 138
ACSK03000260 136,247 116
ACSK03000259 128,375 110
ACSK03000258 110,382 95
ACSK03000257 110,325 77
ACSK03000256 106,509 98
ACSK03000255 99,036 80
ACSK03000254 98,169 83
ACSK03000253 88,641 62
ACSK03000252 86,271 70
ACSK03000251 83,883 68
ACSK03000250 83,289 55
ACSK03000249 80,771 68
ACSK03000248 79,918 68
ACSK03000247 78,083 76
ACSK03000246 76,514 61
ACSK03000245 76,027 64
ACSK03000244 73,681 59
ACSK03000243 72,660 58
ACSK03000242 70,140 65
ACSK03000241 69,254 48
ACSK03000240 66,694 72
ACSK03000239 66,493 69
ACSK03000238 65,753 60
ACSK03000237 64,894 62
ACSK03000236 64,562 58
ACSK03000235 61,747 48
ACSK03000234 61,339 50
ACSK03000233 59,599 46
ACSK03000232 58,761 46
ACSK03000231 55,016 51
ACSK03000230 53,752 48
ACSK03000229 52,969 47
ACSK03000228 52,497 48
ACSK03000227 52,347 36
ACSK03000226 51,269 59
ACSK03000225 51,187 35
ACSK03000224 50,045 49
ACSK03000223 45,726 33
ACSK03000222 45,378 38
ACSK03000221 44,009 41
ACSK03000220 43,935 25
ACSK03000219 43,111 24
ACSK03000218 42,882 39
ACSK03000217 41,952 38
ACSK03000216 41,742 33
ACSK03000215 41,210 36
ACSK03000214 40,526 34
ACSK03000213 40,294 29
ACSK03000212 39,543 28
ACSK03000211 39,081 33
ACSK03000210 38,403 28
ACSK03000209 38,034 24
ACSK03000208 37,441 30
ACSK03000207 36,155 26
ACSK03000206 35,939 26
ACSK03000205 34,513 32
ACSK03000204 33,495 28
ACSK03000203 33,025 30
ACSK03000202 32,626 29
ACSK03000201 32,406 29
ACSK03000200 32,153 26
ACSK03000199 32,015 15
ACSK03000198 31,309 25
ACSK03000197 30,675 27
ACSK03000196 30,160 29
ACSK03000195 28,981 22
ACSK03000194 28,521 27
ACSK03000193 28,408 26
ACSK03000192 27,573 23
ACSK03000191 27,507 24
ACSK03000190 27,383 27
ACSK03000189 27,333 25
ACSK03000188 27,238 22
ACSK03000187 27,089 18
ACSK03000186 26,717 24
ACSK03000185 26,696 25
ACSK03000184 26,474 22
ACSK03000183 25,942 26
ACSK03000182 25,319 24
ACSK03000181 24,614 25
ACSK03000180 22,591 23
ACSK03000179 22,229 13
ACSK03000178 21,681 18
ACSK03000177 20,081 20
ACSK03000176 19,826 11
ACSK03000175 19,769 14
ACSK03000174 18,372 12
ACSK03000173 18,324 15
ACSK03000172 16,832 18
ACSK03000171 16,662 13
ACSK03000170 15,929 12
ACSK03000169 15,290 14
ACSK03000168 14,287 12
ACSK03000167 14,253 12
ACSK03000166 13,439 14
ACSK03000165 12,343 10
ACSK03000164 11,935 14
ACSK03000163 11,688 11
ACSK03000162 11,454 9
ACSK03000161 11,270 9
ACSK03000160 10,939 7
ACSK03000159 10,387 9
ACSK03000158 10,355 15
ACSK03000157 10,313 7
ACSK03000156 9,713 5
ACSK03000155 8,973 4
ACSK03000154 8,941 3
ACSK03000153 7,603 2
ACSK03000152 7,373 2
ACSK03000151 7,141 8
ACSK03000150 6,800 9
ACSK03000149 6,773 4
ACSK03000148 6,264 9
ACSK03000147 6,165 6
ACSK03000146 6,044 4
ACSK03000145 6,036 6
ACSK03000144 5,715 7
ACSK03000143 5,708 10
ACSK03000142 5,137 4
ACSK03000141 4,635 3
ACSK03000140 4,568 1
ACSK03000139 4,542 4
ACSK03000138 4,472 5
ACSK03000137 4,100 2
ACSK03000136 4,094 7
ACSK03000135 3,930 3
ACSK03000134 3,818 5
ACSK03000133 3,801 3
ACSK03000132 3,686 4
ACSK03000131 3,621 2
ACSK03000130 3,303 6
ACSK03000129 3,186 4
ACSK03000128 3,170 3
ACSK03000127 2,978 0
ACSK03000126 2,944 4
ACSK03000125 2,711 3
ACSK03000124 2,587 3
ACSK03000123 2,513 1
ACSK03000122 2,475 4
ACSK03000121 2,367 3
ACSK03000120 2,280 3
ACSK03000119 2,250 2
ACSK03000118 2,072 2
ACSK03000117 1,941 1
ACSK03000116 1,918 0
ACSK03000115 1,911 3
ACSK03000114 1,796 1
ACSK03000113 1,769 3
ACSK03000112 1,705 2
ACSK03000111 1,603 1
ACSK03000110 1,603 1
ACSK03000109 1,569 3
ACSK03000108 1,556 1
ACSK03000107 1,441 2
ACSK03000106 1,346 3
ACSK03000105 1,342 1
ACSK03000104 1,322 1
ACSK03000103 1,237 1
ACSK03000102 1,201 0
ACSK03000101 1,188 1
ACSK03000100 1,181 2
ACSK03000099 1,154 1
ACSK03000098 1,154 1
ACSK03000097 1,103 1
ACSK03000096 1,098 1
ACSK03000095 1,068 0
ACSK03000094 1,039 2
ACSK03000093 1,024 2
ACSK03000092 995 1
ACSK03000091 972 1
ACSK03000090 953 0
ACSK03000089 945 0
ACSK03000088 938 0
ACSK03000087 894 2
ACSK03000086 886 0
ACSK03000085 885 2
ACSK03000084 875 3
ACSK03000083 862 1
ACSK03000082 853 1
ACSK03000081 787 1
ACSK03000080 766 1
ACSK03000079 759 1
ACSK03000078 716 2
ACSK03000077 711 1
ACSK03000076 682 0
ACSK03000075 672 0
ACSK03000074 662 1
ACSK03000073 658 1
ACSK03000072 657 1
ACSK03000071 652 1
ACSK03000070 651 0
ACSK03000069 611 1
ACSK03000068 589 0
ACSK03000067 588 0
ACSK03000066 580 0
ACSK03000065 567 1
ACSK03000064 554 0
ACSK03000063 541 1
ACSK03000062 533 0
ACSK03000061 514 1
ACSK03000060 499 0
ACSK03000059 499 1
ACSK03000058 491 1
ACSK03000057 490 1
ACSK03000056 486 1
ACSK03000055 486 1
ACSK03000054 481 1
ACSK03000053 470 1
ACSK03000052 465 1
ACSK03000051 448 0
ACSK03000050 446 0
ACSK03000049 438 1
ACSK03000048 434 0
ACSK03000047 431 1
ACSK03000046 421 0
ACSK03000045 419 0
ACSK03000044 418 0
ACSK03000043 412 1
ACSK03000042 406 1
ACSK03000041 405 0
ACSK03000040 376 0
ACSK03000039 366 1
ACSK03000038 366 0
ACSK03000037 352 0
ACSK03000036 349 1
ACSK03000035 341 0
ACSK03000034 335 0
ACSK03000033 322 1
ACSK03000032 312 1
ACSK03000031 311 0
ACSK03000030 305 1
ACSK03000029 299 0
ACSK03000028 284 0
ACSK03000027 281 0
ACSK03000026 277 0
ACSK03000025 276 0
ACSK03000024 273 0
ACSK03000023 268 1
ACSK03000022 263 0
ACSK03000021 261 0
ACSK03000020 260 0
ACSK03000019 253 0
ACSK03000018 250 1
ACSK03000017 250 0
ACSK03000016 248 0
ACSK03000015 248 0
ACSK03000014 247 1
ACSK03000013 246 0
ACSK03000012 239 0
ACSK03000011 230 0
ACSK03000010 224 0
ACSK03000009 224 0
ACSK03000008 222 0
ACSK03000007 219 0
ACSK03000006 207 0
ACSK03000005 207 0
ACSK03000004 204 0
ACSK03000003 203 1
ACSK03000002 203 1
ACSK03000001 200 0
Total 6,501,886 5,486
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000175415.3

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000175415.3/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000175415.3/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000175415.3/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000175415.3/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000175415.3/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000175415.3/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000175415.3/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000175415.3/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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