cyanobase » Cyanothece sp. CCY0110

Cyanothece sp. CCY0110

Summary

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Data source name GCA_000169335.1
Full name Cyanothece sp. CCY0110 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.

Genome Information

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Chromosomes
Name Size (bp) Genes
AAXW01000001 246,579 257
AAXW01000002 238,648 911
AAXW01000003 234,954 236
AAXW01000004 219,326 236
AAXW01000005 205,081 183
AAXW01000006 174,185 166
AAXW01000007 151,383 125
AAXW01000008 148,275 141
AAXW01000009 144,596 135
AAXW01000010 142,523 145
AAXW01000011 140,562 103
AAXW01000012 135,525 137
AAXW01000013 134,959 141
AAXW01000014 128,252 161
AAXW01000015 117,180 105
AAXW01000016 100,507 117
AAXW01000017 95,543 102
AAXW01000018 85,087 88
AAXW01000019 82,365 66
AAXW01000020 81,955 84
AAXW01000021 80,487 90
AAXW01000022 77,227 72
AAXW01000023 76,687 75
AAXW01000024 75,388 77
AAXW01000025 70,991 63
AAXW01000026 63,823 66
AAXW01000027 61,319 56
AAXW01000028 60,768 45
AAXW01000029 58,920 60
AAXW01000030 57,249 56
AAXW01000031 56,631 65
AAXW01000032 56,549 56
AAXW01000033 55,029 44
AAXW01000034 55,005 50
AAXW01000035 51,683 45
AAXW01000036 51,222 50
AAXW01000037 49,966 49
AAXW01000038 48,776 46
AAXW01000039 47,567 48
AAXW01000040 46,155 45
AAXW01000041 44,996 47
AAXW01000042 43,460 52
AAXW01000043 41,624 49
AAXW01000044 41,494 40
AAXW01000045 38,958 41
AAXW01000046 38,419 34
AAXW01000047 38,394 41
AAXW01000048 37,025 35
AAXW01000049 35,838 26
AAXW01000050 33,334 35
AAXW01000051 32,072 28
AAXW01000052 31,437 40
AAXW01000053 29,546 33
AAXW01000054 29,449 23
AAXW01000055 28,154 27
AAXW01000056 28,107 26
AAXW01000057 27,107 25
AAXW01000058 26,861 27
AAXW01000059 26,245 30
AAXW01000060 25,969 25
AAXW01000061 25,507 24
AAXW01000062 25,304 23
AAXW01000063 24,892 27
AAXW01000064 24,854 22
AAXW01000065 24,758 27
AAXW01000066 24,561 18
AAXW01000067 23,873 28
AAXW01000068 23,781 27
AAXW01000069 23,388 21
AAXW01000070 22,806 24
AAXW01000071 22,715 21
AAXW01000072 22,615 24
AAXW01000073 22,072 18
AAXW01000074 21,923 34
AAXW01000075 20,792 22
AAXW01000076 19,901 17
AAXW01000077 19,647 20
AAXW01000078 19,638 18
AAXW01000079 18,965 18
AAXW01000080 18,959 21
AAXW01000081 18,832 22
AAXW01000082 18,588 19
AAXW01000083 17,876 12
AAXW01000084 17,186 20
AAXW01000085 16,696 13
AAXW01000086 16,650 19
AAXW01000087 16,320 13
AAXW01000088 16,297 17
AAXW01000089 14,668 19
AAXW01000090 14,519 16
AAXW01000091 14,281 23
AAXW01000092 13,264 11
AAXW01000093 12,880 17
AAXW01000094 12,608 18
AAXW01000095 12,392 16
AAXW01000096 12,377 14
AAXW01000097 12,137 12
AAXW01000098 11,936 11
AAXW01000099 11,457 5
AAXW01000100 11,449 13
AAXW01000101 11,370 11
AAXW01000102 11,317 10
AAXW01000103 10,509 14
AAXW01000104 10,133 11
AAXW01000105 10,098 11
AAXW01000106 10,054 10
AAXW01000107 9,863 15
AAXW01000108 9,732 7
AAXW01000109 8,702 11
AAXW01000110 8,441 8
AAXW01000111 8,289 8
AAXW01000112 6,960 6
AAXW01000113 6,681 7
AAXW01000114 6,152 7
AAXW01000115 6,142 4
AAXW01000116 6,055 5
AAXW01000117 5,930 11
AAXW01000118 5,910 6
AAXW01000119 5,856 5
AAXW01000120 5,062 6
AAXW01000121 4,933 7
AAXW01000122 3,991 7
AAXW01000123 3,922 1
AAXW01000124 3,890 3
AAXW01000125 3,145 3
AAXW01000126 3,069 2
AAXW01000127 2,688 2
AAXW01000128 2,560 2
AAXW01000129 2,444 3
AAXW01000130 2,392 3
AAXW01000131 2,351 1
AAXW01000132 2,316 3
AAXW01000133 2,277 4
AAXW01000134 2,231 3
AAXW01000135 2,046 3
AAXW01000136 2,023 3
AAXW01000137 1,986 3
AAXW01000138 1,958 4
AAXW01000139 1,942 3
AAXW01000140 1,914 4
AAXW01000141 1,881 2
AAXW01000142 1,816 1
AAXW01000143 1,764 2
AAXW01000144 1,729 3
AAXW01000145 1,690 2
AAXW01000146 1,638 1
AAXW01000147 1,625 1
AAXW01000148 1,558 3
AAXW01000149 1,513 4
AAXW01000150 1,507 1
AAXW01000151 1,502 1
AAXW01000152 1,453 2
AAXW01000153 1,407 1
AAXW01000154 1,353 2
AAXW01000155 1,266 0
AAXW01000156 1,195 2
AAXW01000157 1,184 2
AAXW01000158 1,169 1
AAXW01000159 1,167 2
AAXW01000160 1,095 1
AAXW01000161 1,068 2
AAXW01000162 1,013 2
AAXW01000163 825 0
Total 5,880,532 6,520
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000169335.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000169335.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000169335.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000169335.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000169335.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000169335.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000169335.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000169335.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000169335.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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