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cyanobase » Nodularia spumigena CCY9414

Nodularia spumigena CCY9414

Summary

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Data source name GCA_000169135.1
Full name Nodularia spumigena CCY9414
Taxonomy Lineage Cyanobacteria; Nostocales; Nostocaceae; Nodularia.

Genome Information

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Chromosomes
Name Size (bp) Genes
AAVW01000001 263,937 179
AAVW01000002 205,426 184
AAVW01000003 152,486 140
AAVW01000004 105,009 86
AAVW01000005 102,508 121
AAVW01000006 97,491 97
AAVW01000007 86,504 74
AAVW01000008 84,816 78
AAVW01000009 77,229 51
AAVW01000010 77,142 73
AAVW01000011 75,188 68
AAVW01000012 73,452 72
AAVW01000013 72,284 64
AAVW01000014 63,691 61
AAVW01000015 63,396 48
AAVW01000016 58,800 54
AAVW01000017 57,874 53
AAVW01000018 57,105 53
AAVW01000019 57,101 54
AAVW01000020 56,725 52
AAVW01000021 56,662 25
AAVW01000022 55,152 49
AAVW01000023 54,556 55
AAVW01000024 54,281 53
AAVW01000025 53,597 42
AAVW01000026 53,407 46
AAVW01000027 53,231 53
AAVW01000028 51,890 29
AAVW01000029 51,800 39
AAVW01000030 51,064 40
AAVW01000031 50,562 47
AAVW01000032 49,454 45
AAVW01000033 48,548 48
AAVW01000034 48,224 32
AAVW01000035 45,719 44
AAVW01000036 45,711 62
AAVW01000037 43,905 47
AAVW01000038 43,399 39
AAVW01000039 42,916 45
AAVW01000040 42,327 39
AAVW01000041 42,074 40
AAVW01000042 41,624 42
AAVW01000043 41,295 34
AAVW01000044 41,261 41
AAVW01000045 40,117 33
AAVW01000046 39,723 39
AAVW01000047 39,343 48
AAVW01000048 38,851 37
AAVW01000049 38,746 37
AAVW01000050 37,929 33
AAVW01000051 36,976 29
AAVW01000052 36,731 31
AAVW01000053 36,228 41
AAVW01000054 36,123 35
AAVW01000055 35,587 36
AAVW01000056 35,561 38
AAVW01000057 35,096 29
AAVW01000058 35,086 30
AAVW01000059 34,732 32
AAVW01000060 33,874 34
AAVW01000061 33,503 33
AAVW01000062 33,230 26
AAVW01000063 32,853 39
AAVW01000064 32,607 29
AAVW01000065 32,092 24
AAVW01000066 30,292 38
AAVW01000067 29,917 27
AAVW01000068 29,649 33
AAVW01000069 29,425 27
AAVW01000070 28,477 31
AAVW01000071 28,227 30
AAVW01000072 27,745 30
AAVW01000073 27,466 22
AAVW01000074 26,632 19
AAVW01000075 26,594 25
AAVW01000076 26,077 34
AAVW01000077 25,809 31
AAVW01000078 25,711 29
AAVW01000079 25,643 26
AAVW01000080 25,333 22
AAVW01000081 24,498 24
AAVW01000082 24,217 26
AAVW01000083 23,678 22
AAVW01000084 23,163 22
AAVW01000085 21,941 26
AAVW01000086 21,625 21
AAVW01000087 20,922 22
AAVW01000088 20,789 22
AAVW01000089 20,506 20
AAVW01000090 20,247 20
AAVW01000091 19,886 21
AAVW01000092 19,742 17
AAVW01000093 19,687 20
AAVW01000094 19,522 10
AAVW01000095 19,495 13
AAVW01000096 19,204 22
AAVW01000097 18,910 14
AAVW01000098 18,854 16
AAVW01000099 18,690 19
AAVW01000100 18,540 18
AAVW01000101 17,610 17
AAVW01000102 17,269 6
AAVW01000103 17,239 14
AAVW01000104 16,765 13
AAVW01000105 16,505 19
AAVW01000106 16,491 10
AAVW01000107 16,459 17
AAVW01000108 15,821 14
AAVW01000109 15,680 11
AAVW01000110 15,422 13
AAVW01000111 14,955 12
AAVW01000112 14,660 12
AAVW01000113 13,894 11
AAVW01000114 13,628 15
AAVW01000115 13,504 11
AAVW01000116 13,118 8
AAVW01000117 13,010 11
AAVW01000118 12,879 13
AAVW01000119 12,108 17
AAVW01000120 11,930 11
AAVW01000121 11,927 16
AAVW01000122 11,676 12
AAVW01000123 11,646 11
AAVW01000124 11,198 10
AAVW01000125 10,246 9
AAVW01000126 10,189 9
AAVW01000127 9,991 8
AAVW01000128 9,743 10
AAVW01000129 9,461 10
AAVW01000130 9,392 9
AAVW01000131 9,139 9
AAVW01000132 9,051 12
AAVW01000133 9,038 13
AAVW01000134 8,608 9
AAVW01000135 8,334 6
AAVW01000136 8,112 9
AAVW01000137 7,943 8
AAVW01000138 7,902 7
AAVW01000139 7,848 7
AAVW01000140 7,540 5
AAVW01000141 7,331 9
AAVW01000142 7,095 7
AAVW01000143 6,930 6
AAVW01000144 6,911 7
AAVW01000145 6,901 12
AAVW01000146 6,710 7
AAVW01000147 6,406 4
AAVW01000148 6,369 6
AAVW01000149 6,343 5
AAVW01000150 6,269 4
AAVW01000151 6,221 8
AAVW01000152 6,032 7
AAVW01000153 5,173 6
AAVW01000154 5,116 5
AAVW01000155 4,685 5
AAVW01000156 4,573 6
AAVW01000157 4,256 4
AAVW01000158 4,168 7
AAVW01000159 3,768 3
AAVW01000160 3,217 1
AAVW01000161 3,039 4
AAVW01000162 2,811 4
AAVW01000163 2,757 2
AAVW01000164 2,753 4
AAVW01000165 2,748 4
AAVW01000166 2,574 3
AAVW01000167 2,571 3
AAVW01000168 2,420 2
AAVW01000169 2,370 2
AAVW01000170 2,340 2
AAVW01000171 2,286 4
AAVW01000172 2,256 3
AAVW01000173 2,040 2
AAVW01000174 2,015 3
AAVW01000175 2,012 4
AAVW01000176 1,951 3
AAVW01000177 1,867 2
AAVW01000178 1,842 3
AAVW01000179 1,828 2
AAVW01000180 1,793 1
AAVW01000181 1,769 2
AAVW01000182 1,755 2
AAVW01000183 1,708 3
AAVW01000184 1,662 3
AAVW01000185 1,641 2
AAVW01000186 1,611 5
AAVW01000187 1,599 3
AAVW01000188 1,580 4
AAVW01000189 1,578 2
AAVW01000190 1,576 2
AAVW01000191 1,559 0
AAVW01000192 1,520 2
AAVW01000193 1,502 2
AAVW01000194 1,456 2
AAVW01000195 1,428 2
AAVW01000196 1,415 1
AAVW01000197 1,408 4
AAVW01000198 1,370 3
AAVW01000199 1,359 2
AAVW01000200 1,293 2
AAVW01000201 1,206 4
AAVW01000202 1,132 1
AAVW01000203 1,077 1
AAVW01000204 452 0
Total 5,316,258 4,904
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000169135.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000169135.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000169135.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000169135.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000169135.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000169135.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000169135.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000169135.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000169135.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000169135.1/genes/interpro.txt (File format)

MicrobeBase