cyanobase » Lyngbya sp. PCC 8106

Lyngbya sp. PCC 8106

Summary

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Data source name GCA_000169095.1
Full name Lyngbya sp. PCC 8106 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.

Genome Information

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Chromosomes
Name Size (bp) Genes
AAVU01000001 306,111 250
AAVU01000002 298,132 247
AAVU01000003 284,203 274
AAVU01000004 239,124 220
AAVU01000005 223,844 198
AAVU01000006 203,149 182
AAVU01000007 187,976 156
AAVU01000008 181,157 132
AAVU01000009 171,481 152
AAVU01000010 171,036 161
AAVU01000011 166,738 116
AAVU01000012 165,860 132
AAVU01000013 163,401 128
AAVU01000014 152,382 125
AAVU01000015 145,495 121
AAVU01000016 144,962 114
AAVU01000017 142,076 132
AAVU01000018 130,768 107
AAVU01000019 130,196 103
AAVU01000020 122,992 122
AAVU01000021 108,332 94
AAVU01000022 101,469 84
AAVU01000023 100,835 94
AAVU01000024 97,263 81
AAVU01000025 96,784 92
AAVU01000026 94,125 82
AAVU01000027 91,896 88
AAVU01000028 89,883 90
AAVU01000029 88,773 71
AAVU01000030 87,338 71
AAVU01000031 84,435 74
AAVU01000032 83,280 81
AAVU01000033 79,926 110
AAVU01000034 78,694 61
AAVU01000035 78,593 63
AAVU01000036 77,256 62
AAVU01000037 76,048 46
AAVU01000038 75,179 73
AAVU01000039 73,425 76
AAVU01000040 73,345 66
AAVU01000041 72,791 68
AAVU01000042 66,264 66
AAVU01000043 63,987 52
AAVU01000044 58,324 48
AAVU01000045 57,933 62
AAVU01000046 55,905 46
AAVU01000047 54,269 47
AAVU01000048 52,818 51
AAVU01000049 50,425 42
AAVU01000050 50,259 49
AAVU01000051 47,490 42
AAVU01000052 45,336 46
AAVU01000053 44,235 37
AAVU01000054 41,412 38
AAVU01000055 37,746 33
AAVU01000056 37,059 24
AAVU01000057 35,130 32
AAVU01000058 33,585 25
AAVU01000059 33,565 33
AAVU01000060 33,210 31
AAVU01000061 31,933 30
AAVU01000062 30,512 33
AAVU01000063 29,463 22
AAVU01000064 28,989 26
AAVU01000065 26,484 20
AAVU01000066 25,735 28
AAVU01000067 25,666 23
AAVU01000068 25,328 25
AAVU01000069 24,239 16
AAVU01000070 22,568 19
AAVU01000071 22,565 14
AAVU01000072 22,093 21
AAVU01000073 19,350 19
AAVU01000074 18,932 20
AAVU01000075 18,723 14
AAVU01000076 18,317 17
AAVU01000077 15,374 19
AAVU01000078 14,059 12
AAVU01000079 13,990 10
AAVU01000080 13,814 13
AAVU01000081 13,503 14
AAVU01000082 13,166 11
AAVU01000083 12,787 18
AAVU01000084 11,408 20
AAVU01000085 10,019 7
AAVU01000086 9,160 9
AAVU01000087 9,047 7
AAVU01000088 8,686 7
AAVU01000089 8,491 11
AAVU01000090 8,188 9
AAVU01000091 6,381 8
AAVU01000092 4,610 4
AAVU01000093 3,347 3
AAVU01000094 3,313 7
AAVU01000095 2,285 4
AAVU01000096 2,016 3
AAVU01000097 1,985 6
AAVU01000098 1,952 2
AAVU01000099 1,937 1
AAVU01000100 1,863 4
AAVU01000101 1,857 3
AAVU01000102 1,784 2
AAVU01000103 1,718 2
AAVU01000104 1,718 4
AAVU01000105 1,639 4
AAVU01000106 1,582 3
AAVU01000107 1,472 1
AAVU01000108 1,340 3
AAVU01000109 1,221 1
AAVU01000110 1,197 3
Total 7,037,511 6,185
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000169095.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000169095.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000169095.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000169095.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000169095.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000169095.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000169095.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000169095.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000169095.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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