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cyanobase » Crocosphaera watsonii WH 8501

Crocosphaera watsonii WH 8501

Summary

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Data source name GCA_000167195.1
Full name Crocosphaera watsonii WH 8501
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Crocosphaera.

Genome Information

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Chromosomes
Name Size (bp) Genes
AADV02000001 720,107 692
AADV02000002 710,623 682
AADV02000003 347,519 328
AADV02000004 225,009 194
AADV02000005 198,057 182
AADV02000006 136,356 134
AADV02000007 65,471 62
AADV02000008 63,512 63
AADV02000009 55,207 60
AADV02000010 45,810 45
AADV02000011 42,731 38
AADV02000012 42,698 48
AADV02000013 42,325 37
AADV02000014 40,214 36
AADV02000015 39,353 44
AADV02000016 38,714 36
AADV02000017 38,577 32
AADV02000018 37,167 41
AADV02000019 37,014 13
AADV02000020 35,009 23
AADV02000021 34,344 33
AADV02000022 34,047 32
AADV02000023 33,574 35
AADV02000024 33,195 37
AADV02000025 32,719 28
AADV02000026 32,362 34
AADV02000027 32,297 35
AADV02000028 31,590 32
AADV02000029 31,207 32
AADV02000030 30,540 26
AADV02000031 30,053 27
AADV02000032 29,475 28
AADV02000033 27,017 27
AADV02000034 26,770 26
AADV02000035 26,653 26
AADV02000036 26,390 23
AADV02000037 26,376 25
AADV02000038 25,703 26
AADV02000039 25,573 23
AADV02000040 25,559 22
AADV02000041 24,925 22
AADV02000042 24,362 24
AADV02000043 24,007 23
AADV02000044 23,910 28
AADV02000045 23,451 19
AADV02000046 23,102 25
AADV02000047 22,997 29
AADV02000048 22,920 29
AADV02000049 22,913 25
AADV02000050 22,753 19
AADV02000051 22,737 21
AADV02000052 22,612 18
AADV02000053 22,474 21
AADV02000054 22,286 22
AADV02000055 22,256 23
AADV02000056 22,205 19
AADV02000057 21,611 16
AADV02000058 21,292 21
AADV02000059 21,010 22
AADV02000060 20,471 20
AADV02000061 20,351 14
AADV02000062 20,063 19
AADV02000063 19,885 18
AADV02000064 19,866 19
AADV02000065 19,706 20
AADV02000066 19,537 21
AADV02000067 19,498 26
AADV02000068 18,916 18
AADV02000069 18,429 15
AADV02000070 18,346 17
AADV02000071 17,841 21
AADV02000072 17,752 13
AADV02000073 17,725 18
AADV02000074 17,640 18
AADV02000075 17,569 16
AADV02000076 17,373 17
AADV02000077 17,008 19
AADV02000078 16,880 15
AADV02000079 16,727 14
AADV02000080 16,614 15
AADV02000081 16,539 18
AADV02000082 16,426 16
AADV02000083 16,387 16
AADV02000084 16,290 16
AADV02000085 16,222 15
AADV02000086 16,109 16
AADV02000087 16,065 14
AADV02000088 15,787 15
AADV02000089 15,686 13
AADV02000090 15,580 15
AADV02000091 15,073 16
AADV02000092 15,036 14
AADV02000093 14,716 10
AADV02000094 14,681 11
AADV02000095 14,642 10
AADV02000096 14,539 17
AADV02000097 14,528 16
AADV02000098 14,466 12
AADV02000099 14,364 10
AADV02000100 14,360 14
AADV02000101 14,332 16
AADV02000102 14,330 12
AADV02000103 14,272 13
AADV02000104 14,222 15
AADV02000105 14,166 14
AADV02000106 13,734 9
AADV02000107 13,713 12
AADV02000108 13,501 12
AADV02000109 13,488 12
AADV02000110 13,473 12
AADV02000111 13,413 9
AADV02000112 13,345 12
AADV02000113 13,338 10
AADV02000114 13,257 14
AADV02000115 13,195 15
AADV02000116 13,156 13
AADV02000117 13,148 15
AADV02000118 13,127 14
AADV02000119 13,117 16
AADV02000120 12,911 12
AADV02000121 12,750 13
AADV02000122 12,581 11
AADV02000123 12,486 14
AADV02000124 12,437 12
AADV02000125 12,425 14
AADV02000126 12,285 14
AADV02000127 12,176 14
AADV02000128 12,161 16
AADV02000129 12,148 15
AADV02000130 12,091 11
AADV02000131 12,046 10
AADV02000132 11,761 10
AADV02000133 11,642 12
AADV02000134 11,625 10
AADV02000135 11,537 5
AADV02000136 11,469 15
AADV02000137 11,467 13
AADV02000138 11,430 11
AADV02000139 11,409 11
AADV02000140 11,232 10
AADV02000141 11,231 12
AADV02000142 11,198 10
AADV02000143 11,143 11
AADV02000144 11,100 13
AADV02000145 11,036 14
AADV02000146 10,942 10
AADV02000147 10,909 13
AADV02000148 10,826 10
AADV02000149 10,813 10
AADV02000150 10,716 9
AADV02000151 10,685 11
AADV02000152 10,683 10
AADV02000153 10,526 11
AADV02000154 10,489 12
AADV02000155 10,380 11
AADV02000156 10,353 10
AADV02000157 10,348 10
AADV02000158 10,265 12
AADV02000159 10,064 6
AADV02000160 10,061 9
AADV02000161 10,030 7
AADV02000162 9,734 10
AADV02000163 9,732 14
AADV02000164 9,708 10
AADV02000165 9,652 8
AADV02000166 9,611 7
AADV02000167 9,553 8
AADV02000168 9,486 8
AADV02000169 9,441 6
AADV02000170 9,269 8
AADV02000171 8,886 9
AADV02000172 8,791 11
AADV02000173 8,618 8
AADV02000174 8,548 5
AADV02000175 8,499 9
AADV02000176 8,394 10
AADV02000177 8,337 10
AADV02000178 8,295 8
AADV02000179 8,243 6
AADV02000180 8,212 9
AADV02000181 8,129 8
AADV02000182 8,115 8
AADV02000183 8,080 10
AADV02000184 7,917 7
AADV02000185 7,869 9
AADV02000186 7,630 10
AADV02000187 7,594 6
AADV02000188 7,493 10
AADV02000189 7,485 8
AADV02000190 7,475 9
AADV02000191 7,440 8
AADV02000192 7,363 6
AADV02000193 7,350 6
AADV02000194 7,274 8
AADV02000195 7,221 9
AADV02000196 7,176 6
AADV02000197 7,073 7
AADV02000198 6,865 4
AADV02000199 6,853 8
AADV02000200 6,831 8
AADV02000201 6,812 6
AADV02000202 6,785 7
AADV02000203 6,755 7
AADV02000204 6,704 3
AADV02000205 6,693 5
AADV02000206 6,653 5
AADV02000207 6,515 6
AADV02000208 6,510 7
AADV02000209 6,446 7
AADV02000210 6,387 7
AADV02000211 6,331 6
AADV02000212 6,313 7
AADV02000213 6,266 5
AADV02000214 6,216 9
AADV02000215 6,163 6
AADV02000216 6,104 6
AADV02000217 6,029 5
AADV02000218 5,945 5
AADV02000219 5,883 7
AADV02000220 5,751 4
AADV02000221 5,739 7
AADV02000222 5,650 6
AADV02000223 5,649 5
AADV02000224 5,597 7
AADV02000225 5,519 5
AADV02000226 5,511 6
AADV02000227 5,508 7
AADV02000228 5,497 5
AADV02000229 5,474 4
AADV02000230 5,429 6
AADV02000231 5,145 10
AADV02000232 5,058 7
AADV02000233 5,052 6
AADV02000234 5,009 5
AADV02000235 4,899 8
AADV02000236 4,855 7
AADV02000237 4,831 4
AADV02000238 4,830 3
AADV02000239 4,820 6
AADV02000240 4,799 3
AADV02000241 4,743 4
AADV02000242 4,613 5
AADV02000243 4,599 5
AADV02000244 4,595 5
AADV02000245 4,586 4
AADV02000246 4,452 5
AADV02000247 4,399 8
AADV02000248 4,350 4
AADV02000249 4,253 5
AADV02000250 4,203 4
AADV02000251 4,104 6
AADV02000252 4,098 5
AADV02000253 4,094 3
AADV02000254 4,076 5
AADV02000255 4,047 4
AADV02000256 4,012 5
AADV02000257 3,949 4
AADV02000258 3,947 4
AADV02000259 3,932 5
AADV02000260 3,868 3
AADV02000261 3,825 4
AADV02000262 3,805 3
AADV02000263 3,797 5
AADV02000264 3,767 2
AADV02000265 3,735 3
AADV02000266 3,730 2
AADV02000267 3,706 2
AADV02000268 3,655 3
AADV02000269 3,647 3
AADV02000270 3,643 6
AADV02000271 3,640 3
AADV02000272 3,565 4
AADV02000273 3,522 2
AADV02000274 3,497 3
AADV02000275 3,493 5
AADV02000276 3,329 3
AADV02000277 3,312 5
AADV02000278 3,311 5
AADV02000279 3,232 4
AADV02000280 3,229 4
AADV02000281 3,220 5
AADV02000282 3,175 4
AADV02000283 3,160 4
AADV02000284 3,143 3
AADV02000285 3,130 3
AADV02000286 3,111 5
AADV02000287 3,084 3
AADV02000288 3,002 3
AADV02000289 2,993 3
AADV02000290 2,955 4
AADV02000291 2,892 3
AADV02000292 2,788 3
AADV02000293 2,731 2
AADV02000294 2,709 4
AADV02000295 2,660 0
AADV02000296 2,618 3
AADV02000297 2,614 3
AADV02000298 2,597 4
AADV02000299 2,505 3
AADV02000300 2,490 0
AADV02000301 2,484 3
AADV02000302 2,422 4
AADV02000303 2,389 0
AADV02000304 2,386 2
AADV02000305 2,384 4
AADV02000306 2,381 0
AADV02000307 2,357 2
AADV02000308 2,304 3
AADV02000309 2,278 4
AADV02000310 2,274 4
AADV02000311 2,244 2
AADV02000312 2,207 3
AADV02000313 2,193 0
AADV02000314 2,184 2
AADV02000315 2,164 2
AADV02000316 2,143 0
AADV02000317 2,104 3
AADV02000318 2,078 0
AADV02000319 2,064 0
AADV02000320 2,052 2
AADV02000321 2,048 3
AADV02000322 2,043 0
AADV02000323 2,035 2
Total 6,238,156 5,996
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000167195.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000167195.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000167195.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000167195.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000167195.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000167195.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000167195.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000167195.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000167195.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000167195.1/genes/interpro.txt (File format)

MicrobeBase