cyanobase » Synechococcus sp. WH 5701

Synechococcus sp. WH 5701

Summary

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Data source name GCA_000153045.1
Full name Synechococcus sp. WH 5701 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
CH724159 1,792,002 2,014
CH724160 1,068,361 1,143
CH724161 37,090 5
CH724162 36,711 2
CH724163 36,531 4
CH724164 36,489 1
CH724165 36,391 3
CH724166 36,357 4
CH724167 36,351 5
AANO01000015 3,149 5
AANO01000016 2,726 2
AANO01000017 2,480 3
AANO01000018 2,401 4
AANO01000019 2,389 2
AANO01000020 2,310 6
AANO01000021 2,191 4
AANO01000022 2,135 4
AANO01000024 2,044 2
AANO01000025 2,043 3
AANO01000026 2,019 3
AANO01000028 1,938 2
AANO01000029 1,918 0
AANO01000030 1,915 3
AANO01000031 1,895 0
AANO01000032 1,876 0
AANO01000033 1,868 1
AANO01000035 1,815 3
AANO01000037 1,793 3
AANO01000038 1,786 3
AANO01000039 1,778 3
AANO01000040 1,774 2
AANO01000041 1,763 0
AANO01000042 1,748 3
AANO01000043 1,747 1
AANO01000044 1,742 5
AANO01000045 1,732 2
AANO01000046 1,712 2
AANO01000047 1,705 1
AANO01000048 1,687 1
AANO01000050 1,673 3
AANO01000051 1,666 2
AANO01000052 1,665 3
AANO01000053 1,660 3
AANO01000054 1,656 3
AANO01000055 1,635 2
AANO01000056 1,626 5
AANO01000058 1,592 2
AANO01000059 1,580 3
AANO01000060 1,559 2
AANO01000062 1,554 0
AANO01000061 1,554 2
AANO01000063 1,551 2
AANO01000064 1,528 2
AANO01000065 1,516 2
AANO01000066 1,510 2
AANO01000067 1,505 1
AANO01000068 1,504 2
AANO01000070 1,492 1
AANO01000071 1,479 2
AANO01000072 1,463 0
AANO01000073 1,462 0
AANO01000074 1,455 4
AANO01000075 1,454 3
AANO01000076 1,451 4
AANO01000077 1,445 2
AANO01000078 1,442 1
AANO01000079 1,422 1
AANO01000080 1,419 3
AANO01000081 1,418 2
AANO01000083 1,404 3
AANO01000082 1,404 1
AANO01000084 1,397 4
AANO01000085 1,394 5
AANO01000087 1,365 2
AANO01000088 1,354 4
AANO01000089 1,350 2
AANO01000090 1,349 3
AANO01000091 1,349 2
AANO01000092 1,335 0
AANO01000093 1,325 2
AANO01000094 1,318 2
AANO01000095 1,316 2
AANO01000097 1,315 0
AANO01000096 1,315 2
AANO01000099 1,291 2
AANO01000100 1,287 2
AANO01000101 1,284 1
AANO01000102 1,281 2
AANO01000103 1,277 0
AANO01000104 1,254 2
AANO01000105 1,248 1
AANO01000106 1,244 2
AANO01000109 1,221 2
AANO01000110 1,218 1
AANO01000111 1,216 2
AANO01000113 1,209 1
AANO01000112 1,209 1
AANO01000114 1,205 2
AANO01000115 1,197 0
AANO01000117 1,183 2
AANO01000118 1,165 4
AANO01000119 1,164 1
AANO01000121 1,149 1
AANO01000122 1,144 1
AANO01000123 1,136 2
AANO01000125 1,133 2
AANO01000126 1,125 1
AANO01000127 1,122 0
AANO01000128 1,115 2
AANO01000129 1,113 1
AANO01000130 1,108 2
AANO01000131 1,101 2
AANO01000132 1,086 2
AANO01000133 1,073 2
AANO01000134 1,055 2
AANO01000135 1,035 1
Total 3,280,236 3,401
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000153045.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000153045.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000153045.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000153045.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000153045.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000153045.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000153045.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000153045.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000153045.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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