cyanobase » Cyanothece sp. PCC 7822

Cyanothece sp. PCC 7822

Summary

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Data source name GCA_000147335.1
Full name Cyanothece sp. PCC 7822
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.

Genome Information

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Chromosomes
Name Size (bp) Genes
Chromosome 6,091,620 5,482
Cy782201 879,545 546
Cy782202 473,846 364
Cy782203 291,993 236
Cy782204 47,550 28
Cy782205 43,617 33
Cy782206 13,777 13
Total 7,841,948 6,702
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000147335.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000147335.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000147335.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000147335.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000147335.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000147335.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000147335.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000147335.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000147335.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000147335.1/genes/interpro.txt (File format)

MicrobeBase