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Full-text search result: 61 genes by "lyase" TXT SET

Synechococcus sp. WH 7803 (61 genes ) TXT SET

SynWH7803_1271 Gene product Deoxyribodipyrimidine photolyase-related protein
GO term Molecular Function: DNA photolyase activity (GO:0003913)
InterPro IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal; HMMPfam:PF03441 FAD_binding_7
InterPro IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal; superfamily:SSF48173 Photolyase_FAD-bd/Cryptochr_C
InterPro IPR007357 Deoxyribodipyrimidine photolyase-related protein; HMMPfam:PF04244 DPRP
Blast Hits [TAIR_pep] AT3G15620.2 | Symbols: UVR3 | UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase | chr3:5294201-5296548 REVERSE
Blast Hits [nr] ref|ZP_01124056.1| photolyase protein family protein [Synechococcus sp. WH 7805] gi|88787534|gb|EAR18691.1| photolyase protein family protein [Synechococcus sp. WH 7805]
SynWH7803_2038 Gene product adenylosuccinate lyase
GO term Molecular Function: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity (GO:0004018)
InterPro IPR000362 Fumarate lyase; FPrintScan:PR00149 FUMRATELYASE
InterPro IPR000362 Fumarate lyase; HMMPfam:PF00206 Lyase_1
InterPro IPR003031 Delta crystallin; FPrintScan:PR00145 ARGSUCLYASE
InterPro IPR004769 Adenylosuccinate lyase; HMMTigr:TIGR00928 purB
InterPro IPR019468 Adenylosuccinate lyase, C-terminal; HMMPfam:PF10397 ADSL_C
InterPro IPR020557 Fumarate lyase, conserved site; PatternScan:PS00163 FUMARATE_LYASES
Blast Hits [TAIR_pep] AT4G18440.1 | Symbols: | adenylosuccinate lyase, putative / adenylosuccinase, putative | chr4:10186385-10188832 REVERSE
Blast Hits [nr] ref|ZP_01122870.1| adenylosuccinate lyase [Synechococcus sp. WH 7805] gi|88788572|gb|EAR19727.1| adenylosuccinate lyase [Synechococcus sp. WH 7805]
Blast Hits [sprot] PUR8_SYNY3 (sp|P74384) Adenylosuccinate lyase OS=Synechocystis sp. (strain PCC 6803) GN=purB PE=3 SV=1
SynWH7803_2039 GO term Molecular Function: lyase activity (GO:0016829)
InterPro IPR000362 Fumarate lyase; FPrintScan:PR00149 FUMRATELYASE
InterPro IPR000362 Fumarate lyase; HMMPfam:PF00206 Lyase_1
InterPro IPR020557 Fumarate lyase, conserved site; PatternScan:PS00163 FUMARATE_LYASES
Blast Hits [nr] ref|ZP_01122868.1| Fumarate lyase [Synechococcus sp. WH 7805] gi|88788570|gb|EAR19725.1| Fumarate lyase [Synechococcus sp. WH 7805]
SynWH7803_2056 InterPro IPR004155 PBS lyase HEAT-like repeat; HMMSmart:SM00567 EZ_HEAT
SynWH7803_2495 GO term Molecular Function: hydro-lyase activity (GO:0016836)
InterPro IPR003712 Cyanate lyase, C-terminal; HMMPfam:PF02560 Cyanate_lyase
InterPro IPR003712 Cyanate lyase, C-terminal; superfamily:SSF55234 Cyanate_lyase_C
Blast Hits [TAIR_pep] AT3G23490.1 | Symbols: CYN | CYN (CYANASE); DNA binding / cyanate hydratase/ hydro-lyase | chr3:8423238-8424415 REVERSE
SynWH7803_0013 Gene product argininosuccinate lyase
GO term Molecular Function: argininosuccinate lyase activity (GO:0004056)
InterPro IPR000362 Fumarate lyase; FPrintScan:PR00149 FUMRATELYASE
InterPro IPR000362 Fumarate lyase; HMMPfam:PF00206 Lyase_1
InterPro IPR003031 Delta crystallin; FPrintScan:PR00145 ARGSUCLYASE
InterPro IPR009049 Argininosuccinate lyase; HMMPanther:PTHR11444:SF3 argH
InterPro IPR009049 Argininosuccinate lyase; HMMTigr:TIGR00838 argH
InterPro IPR020557 Fumarate lyase, conserved site; PatternScan:PS00163 FUMARATE_LYASES
Blast Hits [TAIR_pep] AT5G10920.1 | Symbols: | argininosuccinate lyase, putative / arginosuccinase, putative | chr5:3441805-3443892 FORWARD
Blast Hits [nr] ref|ZP_01124859.1| argininosuccinate lyase [Synechococcus sp. WH 7805] gi|88786570|gb|EAR17729.1| argininosuccinate lyase [Synechococcus sp. WH 7805]
Blast Hits [sprot] ARLY_SYNS3 (sp|Q0IE70) Argininosuccinate lyase OS=Synechococcus sp. (strain CC9311) GN=argH PE=3 SV=1
SynWH7803_0262 Gene product Deoxyribodipyrimidine photolyase
GO term Molecular Function: DNA photolyase activity (GO:0003913)
InterPro IPR002081 Cryptochrome/DNA photolyase, class 1; FPrintScan:PR00147 DNAPHOTLYASE
InterPro IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal; HMMPfam:PF03441 FAD_binding_7
InterPro IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal; superfamily:SSF48173 Photolyase_FAD-bd/Cryptochr_C
InterPro IPR006050 DNA photolyase, N-terminal; HMMPfam:PF00875 DNA_photolyase
InterPro IPR006050 DNA photolyase, N-terminal; superfamily:SSF52425 DNA_photolyase_N
InterPro IPR018394 Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal; PatternScan:PS00394 DNA_PHOTOLYASES_1_1
InterPro IPR018394 Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal; PatternScan:PS00691 DNA_PHOTOLYASES_1_2
Blast Hits [nr] ref|ZP_01472823.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] gi|116066879|gb|EAU72634.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
Blast Hits [sprot] PHR_SYNP6 (sp|P05327) Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
SynWH7803_0267 Gene product FAD binding domain of DNA photolyase
GO term Molecular Function: DNA photolyase activity (GO:0003913)
InterPro IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal; HMMPfam:PF03441 FAD_binding_7
InterPro IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal; superfamily:SSF48173 Photolyase_FAD-bd/Cryptochr_C
Blast Hits [TAIR_pep] AT5G24850.1 | Symbols: CRY3 | CRY3 (cryptochrome 3); DNA binding / DNA photolyase/ FMN binding | chr5:8535399-8538016 REVERSE
Blast Hits [nr] ref|ZP_01123576.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] gi|88788104|gb|EAR19260.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
Blast Hits [sprot] PHR_STRGR (sp|P12768) Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr PE=3 SV=1
SynWH7803_0335 InterPro IPR010663 DNA glycosylase/AP lyase/isoleucyl tRNA synthetase, zinc finger domain; HMMPfam:PF06827 zf-FPG_IleRS
SynWH7803_0476 Gene product Phycobilin lyase beta subunit
InterPro IPR004155 PBS lyase HEAT-like repeat; HMMPfam:PF03130 HEAT_PBS
Blast Hits [nr] ref|ZP_05790743.1| phycocyanobilin lyase subunit beta [Synechococcus sp. WH 8109] gi|260414647|gb|EEX07943.1| phycocyanobilin lyase subunit beta [Synechococcus sp. WH 8109]
SynWH7803_0477 Gene product Phycobilin lyase alpha subunit
InterPro IPR004155 PBS lyase HEAT-like repeat; HMMPfam:PF03130 HEAT_PBS
InterPro IPR004155 PBS lyase HEAT-like repeat; HMMSmart:SM00567 EZ_HEAT
Blast Hits [nr] ref|ZP_05789298.1| phycocyanobilin lyase subunit alpha [Synechococcus sp. WH 8109] gi|260413202|gb|EEX06498.1| phycocyanobilin lyase subunit alpha [Synechococcus sp. WH 8109]
SynWH7803_0488 InterPro IPR004155 PBS lyase HEAT-like repeat; HMMPfam:PF03130 HEAT_PBS
Blast Hits [TAIR_pep] AT3G58180.1 | Symbols: | PBS lyase HEAT-like repeat-containing protein | chr3:21544189-21545981 FORWARD
SynWH7803_0489 InterPro IPR004155 PBS lyase HEAT-like repeat; HMMPfam:PF03130 HEAT_PBS
InterPro IPR004155 PBS lyase HEAT-like repeat; HMMSmart:SM00567 EZ_HEAT
SynWH7803_0491 InterPro IPR004155 PBS lyase HEAT-like repeat; HMMSmart:SM00567 EZ_HEAT
SynWH7803_0494 InterPro IPR004155 PBS lyase HEAT-like repeat; HMMPfam:PF03130 HEAT_PBS
InterPro IPR004155 PBS lyase HEAT-like repeat; HMMSmart:SM00567 EZ_HEAT
SynWH7803_0539 GO term Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906)
InterPro IPR000191 DNA glycosylase/AP lyase; HMMTigr:TIGR00577 fpg
InterPro IPR000214 DNA glycosylase/AP lyase, zinc finger domain; ProfileScan:PS51066 ZF_FPG_2
InterPro IPR010663 DNA glycosylase/AP lyase/isoleucyl tRNA synthetase, zinc finger domain; HMMPfam:PF06827 zf-FPG_IleRS
InterPro IPR012319 DNA glycosylase/AP lyase, catalytic domain; HMMPfam:PF01149 Fapy_DNA_glyco
InterPro IPR012319 DNA glycosylase/AP lyase, catalytic domain; HMMSmart:SM00898 Fapy_DNA_glyco
InterPro IPR012319 DNA glycosylase/AP lyase, catalytic domain; ProfileScan:PS51068 FPG_CAT
InterPro IPR012319 DNA glycosylase/AP lyase, catalytic domain; superfamily:SSF81624 Form_DNAglyc_cat
InterPro IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding; HMMPfam:PF06831 H2TH
InterPro IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site; PatternScan:PS01242 ZF_FPG_1
SynWH7803_0636 Gene product Deoxyribodipyrimidine photolyase
GO term Molecular Function: DNA photolyase activity (GO:0003913)
InterPro IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal; HMMPfam:PF03441 FAD_binding_7
InterPro IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal; superfamily:SSF48173 Photolyase_FAD-bd/Cryptochr_C
InterPro IPR006050 DNA photolyase, N-terminal; HMMPfam:PF00875 DNA_photolyase
InterPro IPR006050 DNA photolyase, N-terminal; superfamily:SSF52425 DNA_photolyase_N
Blast Hits [nr] ref|ZP_01123195.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] gi|88788897|gb|EAR20052.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
SynWH7803_1033 Gene product 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
InterPro IPR002830 Carboxylyase-related; HMMPfam:PF01977 UbiD
InterPro IPR002830 Carboxylyase-related; HMMTigr:TIGR00148 carboxylyase
Blast Hits [nr] ref|ZP_01123911.1| Carboxylyase-related protein [Synechococcus sp. WH 7805] gi|88787389|gb|EAR18546.1| Carboxylyase-related protein [Synechococcus sp. WH 7805]
SynWH7803_0189 Gene product Putative NblB protein (PBS lyase with HEAT-like repeats)
SynWH7803_0587 Gene product metC/metB Cystathionine beta-lyase/cystathioninegamma-synthase
Blast Hits [TAIR_pep] AT3G57050.2 | Symbols: CBL | CBL (cystathionine beta-lyase); cystathionine beta-lyase | chr3:21111939-21114521 REVERSE
Blast Hits [sprot] CGL_DICDI (sp|Q55DV9) Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=1 SV=1
SynWH7803_0596 Gene product L-cysteine/cystine lyase
Blast Hits [TAIR_pep] AT1G08490.1 | Symbols: ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS | CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE); cysteine desulfurase/ selenocysteine lyase/ transaminase | chr1:2685980-2688547 REVERSE
Blast Hits [nr] ref|ZP_01124754.1| putative L-cysteine/cystine lyase [Synechococcus sp. WH 7805] gi|88787187|gb|EAR18345.1| putative L-cysteine/cystine lyase [Synechococcus sp. WH 7805]
SynWH7803_0874 Gene product Possible pectin lyase (parallel beta-helix repeat protein)
SynWH7803_2098 Gene product Putative lactoylglutathione lyase
GO term Molecular Function: lactoylglutathione lyase activity (GO:0004462)
Blast Hits [TAIR_pep] AT1G67280.1 | Symbols: | lactoylglutathione lyase, putative / glyoxalase I, putative | chr1:25188563-25190547 REVERSE
SynWH7803_2147 Gene product Selenocysteine lyase
Blast Hits [TAIR_pep] AT1G08490.1 | Symbols: ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS | CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE); cysteine desulfurase/ selenocysteine lyase/ transaminase | chr1:2685980-2688547 REVERSE
SynWH7803_2378 Gene product Lactoylglutathione lyase
GO term Molecular Function: lactoylglutathione lyase activity (GO:0004462)
Blast Hits [TAIR_pep] AT1G67280.1 | Symbols: | lactoylglutathione lyase, putative / glyoxalase I, putative | chr1:25188563-25190547 REVERSE
Blast Hits [nr] ref|ZP_01125294.1| lactoylglutathione lyase [Synechococcus sp. WH 7805] gi|88786172|gb|EAR17333.1| lactoylglutathione lyase [Synechococcus sp. WH 7805]
Blast Hits [sprot] LGUL_NEIMB (sp|P0A0T3) Lactoylglutathione lyase OS=Neisseria meningitidis serogroup B GN=gloA PE=3 SV=1
SynWH7803_2414 Gene product Cystathionine beta-lyase family protein (involved in aluminum resistance)
Blast Hits [TAIR_pep] AT1G64660.1 | Symbols: ATMGL | ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE); catalytic/ methionine gamma-lyase | chr1:24028977-24030537 FORWARD
SynWH7803_0073 GO term Molecular Function: lyase activity (GO:0016829)
SynWH7803_0209 GO term Molecular Function: aldehyde-lyase activity (GO:0016832)
SynWH7803_0306 GO term Molecular Function: hydro-lyase activity (GO:0016836)
Blast Hits [TAIR_pep] AT4G13430.1 | Symbols: IIL1 | IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1); 4 iron, 4 sulfur cluster binding / hydro-lyase/ lyase | chr4:7804194-7807789 REVERSE
SynWH7803_0456 GO term Molecular Function: oxo-acid-lyase activity (GO:0016833)
SynWH7803_0577 GO term Molecular Function: lyase activity (GO:0016829)
SynWH7803_0726 GO term Molecular Function: lactoylglutathione lyase activity (GO:0004462)
SynWH7803_0798 GO term Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906)
SynWH7803_0869 GO term Molecular Function: carboxy-lyase activity (GO:0016831)
SynWH7803_1105 GO term Molecular Function: carboxy-lyase activity (GO:0016831)
Blast Hits [nr] ref|ZP_01124232.1| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Synechococcus sp. WH 7805] gi|88787710|gb|EAR18867.1| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Synechococcus sp. WH 7805]
SynWH7803_1204 GO term Molecular Function: carbon-oxygen lyase activity, acting on phosphates (GO:0016838)
SynWH7803_1222 GO term Molecular Function: L-threonine ammonia-lyase activity (GO:0004794)
Blast Hits [TAIR_pep] AT3G10050.1 | Symbols: OMR1 | OMR1 (L-O-METHYLTHREONINE RESISTANT 1); L-threonine ammonia-lyase | chr3:3099164-3101741 REVERSE
SynWH7803_1249 GO term Molecular Function: carbon-oxygen lyase activity (GO:0016835)
SynWH7803_1343 GO term Molecular Function: carboxy-lyase activity (GO:0016831)
SynWH7803_1422 GO term Molecular Function: lyase activity (GO:0016829)
SynWH7803_1957 GO term Molecular Function: hydro-lyase activity (GO:0016836)
SynWH7803_2152 GO term Molecular Function: lyase activity (GO:0016829)
SynWH7803_2317 GO term Molecular Function: hydro-lyase activity (GO:0016836)
SynWH7803_2394 GO term Molecular Function: phosphorus-oxygen lyase activity (GO:0016849)
SynWH7803_2234 Blast Hits [TAIR_pep] AT3G59760.3 | Symbols: OASC, ATCS-C | OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); ATP binding / cysteine synthase | chr3:22072668-22075345 REVERSE
Blast Hits [nr] ref|ZP_01122627.1| O-acetylserine (thiol)-lyase A [Synechococcus sp. WH 7805] gi|88788329|gb|EAR19484.1| O-acetylserine (thiol)-lyase A [Synechococcus sp. WH 7805]
SynWH7803_0132 Blast Hits [sprot] PAL1_DROME (sp|Q9V5E1) Peptidyl-alpha-hydroxyglycine alpha-amidating lyase 1 OS=Drosophila melanogaster GN=PAL1 PE=1 SV=1
SynWH7803_0463 Blast Hits [sprot] ARLY_STRMU (sp|Q8DVX5) Argininosuccinate lyase OS=Streptococcus mutans GN=argH PE=3 SV=1
SynWH7803_1407 Blast Hits [sprot] CYSD_EMENI (sp|P50125) O-acetylhomoserine (thiol)-lyase OS=Emericella nidulans GN=cysD PE=2 SV=2
SynWH7803_1990 Blast Hits [TAIR_pep] AT2G37040.1 | Symbols: pal1, ATPAL1 | pal1 (Phe ammonia lyase 1); phenylalanine ammonia-lyase | chr2:15557602-15560237 REVERSE
Blast Hits [sprot] PALY_CAMSI (sp|P45726) Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1
SynWH7803_0585 Blast Hits [TAIR_pep] AT2G43750.1 | Symbols: OASB, ACS1, CPACS1, ATCS-B | OASB (O-ACETYLSERINE (THIOL) LYASE B); cysteine synthase | chr2:18129604-18132322 REVERSE
SynWH7803_1021 Blast Hits [TAIR_pep] AT1G68890.1 | Symbols: | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | chr1:25896988-25906553 FORWARD
SynWH7803_1162 Blast Hits [TAIR_pep] AT1G68890.1 | Symbols: | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | chr1:25896988-25906553 FORWARD
SynWH7803_1373 Blast Hits [TAIR_pep] AT3G15620.2 | Symbols: UVR3 | UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase | chr3:5294201-5296548 REVERSE
SynWH7803_1540 Blast Hits [TAIR_pep] AT1G08630.5 | Symbols: THA1 | THA1 (Threonine Aldolase 1); aldehyde-lyase/ threonine aldolase | chr1:2743948-2745685 REVERSE
SynWH7803_1753 Blast Hits [TAIR_pep] AT3G55140.1 | Symbols: | pectate lyase family protein | chr3:20438819-20440225 FORWARD
SynWH7803_1819 Blast Hits [TAIR_pep] AT2G41460.1 | Symbols: ARP | ARP; DNA-(apurinic or apyrimidinic site) lyase | chr2:17285731-17288769 FORWARD
SynWH7803_2011 Blast Hits [TAIR_pep] AT3G43260.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: PBS lyase HEAT-like repeat-containing protein (TAIR:AT3G62530.1); Has 43 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:15219454-15221723 FORWARD
SynWH7803_2238 Blast Hits [TAIR_pep] AT5G48900.1 | Symbols: | pectate lyase family protein | chr5:19825240-19828909 FORWARD
SynWH7803_2264 Blast Hits [TAIR_pep] AT1G15380.2 | Symbols: | lactoylglutathione lyase family protein / glyoxalase I family protein | chr1:5290955-5292287 FORWARD
SynWH7803_2470 Blast Hits [TAIR_pep] AT2G28880.1 | Symbols: emb1997 | emb1997 (embryo defective 1997); anthranilate synthase/ catalytic/ oxo-acid-lyase | chr2:12398937-12403108 REVERSE
SynWH7803_2505 Blast Hits [TAIR_pep] AT4G13430.1 | Symbols: IIL1 | IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1); 4 iron, 4 sulfur cluster binding / hydro-lyase/ lyase | chr4:7804194-7807789 REVERSE

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Gene set by search TXT
ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
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