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Full-text search result: 206 genes by "FACTOR" TXT SET

Synechococcus sp. WH 7803 (206 genes ) TXT SET

SynWH7803_1284 GO term Molecular Function: sigma factor activity (GO:0016987)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
Blast Hits [TAIR_pep] AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr1:2703461-2706696 FORWARD
Blast Hits [nr] ref|ZP_01124043.1| Possible type 3 alternative RNA polymerase sigma factor [Synechococcus sp. WH 7805] gi|88787521|gb|EAR18678.1| Possible type 3 alternative RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Blast Hits [sprot] RPSG_CLOAB (sp|P33658) RNA polymerase sigma-G factor OS=Clostridium acetobutylicum GN=sigG PE=3 SV=2
SynWH7803_1314 InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; Gene3D:G3DSA:3.30.70.240 Transl_elong_EFG/EF2_C
InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; HMMPfam:PF00679 EFG_C
InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; HMMSmart:SM00838 EFG_C
InterPro IPR000795 Protein synthesis factor, GTP-binding; FPrintScan:PR00315 ELONGATNFCT
InterPro IPR000795 Protein synthesis factor, GTP-binding; HMMPfam:PF00009 GTP_EFTU
InterPro IPR000795 Protein synthesis factor, GTP-binding; PatternScan:PS00301 EFACTOR_GTP
InterPro IPR004161 Translation elongation factor EFTu/EF1A, domain 2; HMMPfam:PF03144 GTP_EFTU_D2
InterPro IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel; superfamily:SSF50447 Translat_factor
InterPro IPR009022 Elongation factor G/III/V; superfamily:SSF54980 EFG_III_V
Blast Hits [TAIR_pep] AT5G13650.1 | Symbols: | elongation factor family protein | chr5:4397821-4402364 FORWARD
SynWH7803_1328 Gene product elongation factor Ts
GO term Molecular Function: translation elongation factor activity (GO:0003746)
InterPro IPR000449 Ubiquitin-associated/translation elongation factor EF1B, N-terminal; HMMPfam:PF00627 UBA
InterPro IPR001816 Translation elongation factor EFTs/EF1B; HMMPanther:PTHR11741 Transl_elong_EFTs/EF1B
InterPro IPR001816 Translation elongation factor EFTs/EF1B; HMMTigr:TIGR00116 tsf
InterPro IPR014039 Translation elongation factor EFTs/EF1B, dimerisation; Gene3D:G3DSA:3.30.479.20 Transl_elong_EFTs/EF1B_dimer
InterPro IPR014039 Translation elongation factor EFTs/EF1B, dimerisation; HMMPfam:PF00889 EF_TS
InterPro IPR014039 Translation elongation factor EFTs/EF1B, dimerisation; superfamily:SSF54713 EF_TS
InterPro IPR018101 Translation elongation factor Ts, conserved site; PatternScan:PS01126 EF_TS_1
InterPro IPR018101 Translation elongation factor Ts, conserved site; PatternScan:PS01127 EF_TS_2
Blast Hits [TAIR_pep] AT4G29060.1 | Symbols: emb2726 | emb2726 (embryo defective 2726); RNA binding / translation elongation factor | chr4:14317744-14321315 FORWARD
Blast Hits [nr] ref|ZP_01124008.1| elongation factor Ts [Synechococcus sp. WH 7805] gi|88787486|gb|EAR18643.1| elongation factor Ts [Synechococcus sp. WH 7805]
Blast Hits [sprot] EFTS_SYNSC (sp|Q3AKA4) Elongation factor Ts OS=Synechococcus sp. (strain CC9605) GN=tsf PE=3 SV=1
SynWH7803_1352 Gene product Anti-sigma regulatory factor
InterPro IPR016781 Anti-sigma regulatory factor, PmgA, predicted; HMMPIR:PIRSF020906 Anti_s_fact_PmgA_prd
Blast Hits [sprot] SP2AB_ANOFW (sp|B7GKG6) Anti-sigma F factor OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=spoIIAB PE=3 SV=1
SynWH7803_1358 InterPro IPR008514 Virulence factor, secretion apparatus; Gene3D:G3DSA:2.30.110.20 Flv_reduc_FMN_bd
SynWH7803_1420 InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; Gene3D:G3DSA:3.30.750.24 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; HMMPfam:PF01740 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; ProfileScan:PS50801 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; superfamily:SSF52091 STAS
SynWH7803_1480 Gene product Transcription-repair coupling factor
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR003711 Transcription factor CarD; HMMPfam:PF02559 CarD_TRCF
InterPro IPR004576 Transcription-repair coupling factor; HMMTigr:TIGR00580 mfd
InterPro IPR005118 Transcription-repair-coupling factor; HMMPfam:PF03461 TRCF
Blast Hits [nr] ref|ZP_01124374.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805] gi|88786807|gb|EAR17965.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805]
Blast Hits [sprot] MFD_SYNY3 (sp|Q55750) Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803) GN=mfd PE=3 SV=1
SynWH7803_1483 Gene product Putative group 3 RNA polymerase sigma factor
GO term Molecular Function: sigma factor activity (GO:0016987)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
Blast Hits [TAIR_pep] AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr2:15537502-15540016 REVERSE
Blast Hits [nr] ref|ZP_01124378.1| putative type III sigma factor [Synechococcus sp. WH 7805] gi|88786811|gb|EAR17969.1| putative type III sigma factor [Synechococcus sp. WH 7805]
Blast Hits [sprot] RPSG_CLOAB (sp|P33658) RNA polymerase sigma-G factor OS=Clostridium acetobutylicum GN=sigG PE=3 SV=2
SynWH7803_1489 GO term Molecular Function: transcription factor binding (GO:0008134)
InterPro IPR002078 RNA polymerase sigma factor 54, interaction; PatternScan:PS00675 SIGMA54_INTERACT_1
SynWH7803_1493 Gene product peptide chain release factor 3
GO term Molecular Function: translation release factor activity, codon specific (GO:0016149)
InterPro IPR000795 Protein synthesis factor, GTP-binding; FPrintScan:PR00315 ELONGATNFCT
InterPro IPR000795 Protein synthesis factor, GTP-binding; HMMPfam:PF00009 GTP_EFTU
InterPro IPR000795 Protein synthesis factor, GTP-binding; PatternScan:PS00301 EFACTOR_GTP
InterPro IPR004161 Translation elongation factor EFTu/EF1A, domain 2; HMMPfam:PF03144 GTP_EFTU_D2
InterPro IPR004548 Peptide chain release factor 3; HMMTigr:TIGR00503 prfC
InterPro IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel; superfamily:SSF50447 Translat_factor
InterPro IPR009022 Elongation factor G/III/V; superfamily:SSF54980 EFG_III_V
Blast Hits [TAIR_pep] AT1G62750.1 | Symbols: ATSCO1, ATSCO1/CPEF-G, SCO1 | SCO1 (SNOWY COTYLEDON 1); ATP binding / translation elongation factor/ translation factor, nucleic acid binding | chr1:23233622-23236321 REVERSE
Blast Hits [nr] ref|ZP_01124390.1| peptide chain release factor 3 [Synechococcus sp. WH 7805] gi|88786823|gb|EAR17981.1| peptide chain release factor 3 [Synechococcus sp. WH 7805]
Blast Hits [sprot] RF3_SYNE7 (sp|Q31KM4) Peptide chain release factor 3 OS=Synechococcus elongatus (strain PCC 7942) GN=prfC PE=3 SV=1
SynWH7803_1544 Gene product Type II alternative RNA polymerase sigma factor, sigma-70 family
GO term Molecular Function: sigma factor activity (GO:0016987)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000943 RNA polymerase sigma-70 factor; FPrintScan:PR00046 SIGMA70FCT
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00715 SIGMA70_1
InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
InterPro IPR017848 RNA polymerase sigma factor, RpoD-like, cyanobacteria; HMMTigr:TIGR02997 Sig70-cyanoRpoD
Blast Hits [TAIR_pep] AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr2:15537502-15540016 REVERSE
Blast Hits [nr] ref|ZP_01124430.1| type II alternative RNA polymerase sigma factor, sigma-70 family protein [Synechococcus sp. WH 7805] gi|88786863|gb|EAR18021.1| type II alternative RNA polymerase sigma factor, sigma-70 family protein [Synechococcus sp. WH 7805]
Blast Hits [sprot] RPOD3_SYNE7 (sp|Q31QG5) RNA polymerase sigma factor rpoD3 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD3 PE=3 SV=1
SynWH7803_1732 InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; Gene3D:G3DSA:3.30.750.24 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; HMMPfam:PF01740 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; ProfileScan:PS50801 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; superfamily:SSF52091 STAS
SynWH7803_1736 Gene product Alternative RNA polymerase sigma factor, sigma-70 family
GO term Molecular Function: sigma factor activity (GO:0016987)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000943 RNA polymerase sigma-70 factor; FPrintScan:PR00046 SIGMA70FCT
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00715 SIGMA70_1
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00716 SIGMA70_2
InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
InterPro IPR017848 RNA polymerase sigma factor, RpoD-like, cyanobacteria; HMMTigr:TIGR02997 Sig70-cyanoRpoD
Blast Hits [TAIR_pep] AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr1:2703461-2706696 FORWARD
Blast Hits [nr] ref|ZP_01124646.1| Type II alternative RNA polymerase sigma factor, sigma-70 family protein [Synechococcus sp. WH 7805] gi|88787079|gb|EAR18237.1| Type II alternative RNA polymerase sigma factor, sigma-70 family protein [Synechococcus sp. WH 7805]
Blast Hits [sprot] RPOD4_SYNE7 (sp|Q31QR8) RNA polymerase sigma factor rpoD4 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD4 PE=3 SV=1
SynWH7803_1800 InterPro IPR002035 von Willebrand factor, type A; HMMSmart:SM00327 VWA
Blast Hits [sprot] VWA3B_HUMAN (sp|Q502W6) von Willebrand factor A domain-containing protein 3B OS=Homo sapiens GN=VWA3B PE=2 SV=3
SynWH7803_1635 Gene product Translation initiation factor IF-1
GO term Molecular Function: translation initiation factor activity (GO:0003743)
InterPro IPR004368 Translation initiation factor IF-1; HMMTigr:TIGR00008 infA: translation initiation factor IF-1
Blast Hits [TAIR_pep] AT4G11175.1 | Symbols: | translation initiation factor IF-1, chloroplast, putative | chr4:6818162-6818806 FORWARD
Blast Hits [nr] ref|YP_001016871.1| translation initiation factor IF-1 [Prochlorococcus marinus str. MIT 9303] gi|123962850|gb|ABM77606.1| translation initiation factor IF-1 [Prochlorococcus marinus str. MIT 9303]
Blast Hits [pln_est] dbj|DV203612|DV203612 4-B10-T3 H. pluvialis cDNA Lamda ZAP library Haematococcus pluvialis cDNA clone 4-B10-T3 similar to Initiation factor IF-1, mRNA sequence.
Blast Hits [sprot] IF11_DESDG (sp|Q30V89) Translation initiation factor IF-1 1 OS=Desulfovibrio desulfuricans (strain G20) GN=infA1 PE=3 SV=1
SynWH7803_1801 InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; Gene3D:G3DSA:3.30.70.240 Transl_elong_EFG/EF2_C
InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; HMMPfam:PF00679 EFG_C
InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; HMMSmart:SM00838 EFG_C
InterPro IPR000795 Protein synthesis factor, GTP-binding; FPrintScan:PR00315 ELONGATNFCT
InterPro IPR000795 Protein synthesis factor, GTP-binding; HMMPfam:PF00009 GTP_EFTU
InterPro IPR000795 Protein synthesis factor, GTP-binding; PatternScan:PS00301 EFACTOR_GTP
InterPro IPR004161 Translation elongation factor EFTu/EF1A, domain 2; HMMPfam:PF03144 GTP_EFTU_D2
InterPro IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel; superfamily:SSF50447 Translat_factor
InterPro IPR009022 Elongation factor G/III/V; superfamily:SSF54980 EFG_III_V
SynWH7803_2077 Gene product transcription elongation factor NusA
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR010213 Transcription termination factor NusA; HMMTigr:TIGR01953 NusA
InterPro IPR013735 Transcription factor NusA, N-terminal; HMMPfam:PF08529 NusA_N
InterPro IPR013735 Transcription factor NusA, N-terminal; superfamily:SSF69705 TF_NusA_N
Blast Hits [nr] ref|ZP_01122826.1| transcription elongation factor NusA [Synechococcus sp. WH 7805] gi|88788528|gb|EAR19683.1| transcription elongation factor NusA [Synechococcus sp. WH 7805]
SynWH7803_2079 Gene product translation initiation factor IF-2
GO term Molecular Function: translation initiation factor activity (GO:0003743)
InterPro IPR000178 Initiation factor 2; HMMTigr:TIGR00487 IF-2
InterPro IPR000178 Initiation factor 2; PatternScan:PS01176 IF2
InterPro IPR000795 Protein synthesis factor, GTP-binding; FPrintScan:PR00315 ELONGATNFCT
InterPro IPR000795 Protein synthesis factor, GTP-binding; HMMPfam:PF00009 GTP_EFTU
InterPro IPR004161 Translation elongation factor EFTu/EF1A, domain 2; HMMPfam:PF03144 GTP_EFTU_D2
InterPro IPR006847 Translation initiation factor IF-2, N-terminal; HMMPfam:PF04760 IF2_N
InterPro IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel; superfamily:SSF50447 Translat_factor
InterPro IPR015760 Translation initiation factor 2 related; HMMPanther:PTHR23115:SF41 aIF-2
Blast Hits [TAIR_pep] AT1G17220.1 | Symbols: FUG1 | FUG1 (fu-gaeri1); translation initiation factor | chr1:5885383-5890165 FORWARD
Blast Hits [nr] ref|ZP_01122823.1| translation initiation factor IF-2 [Synechococcus sp. WH 7805] gi|88788525|gb|EAR19680.1| translation initiation factor IF-2 [Synechococcus sp. WH 7805]
Blast Hits [sprot] IF2_SYNS3 (sp|Q0I7K2) Translation initiation factor IF-2 OS=Synechococcus sp. (strain CC9311) GN=infB PE=3 SV=1
SynWH7803_2102 InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; Gene3D:G3DSA:3.30.750.24 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; HMMPfam:PF01740 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; ProfileScan:PS50801 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; superfamily:SSF52091 STAS
SynWH7803_2144 InterPro IPR000649 Initiation factor 2B related; HMMPanther:PTHR10233 IF-2B_related
InterPro IPR000649 Initiation factor 2B related; HMMPfam:PF01008 IF-2B
InterPro IPR005251 Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; HMMTigr:TIGR00512 salvage_mtnA
InterPro IPR011559 Initiation factor 2B alpha/beta/delta; HMMTigr:TIGR00524 eIF-2B_rel
Blast Hits [TAIR_pep] AT2G05830.1 | Symbols: | eukaryotic translation initiation factor 2B family protein / eIF-2B family protein | chr2:2229759-2231839 FORWARD
Blast Hits [nr] ref|ZP_01122721.1| translation initiation factor IF-2B subunit alpha [Synechococcus sp. WH 7805] gi|88788423|gb|EAR19578.1| translation initiation factor IF-2B subunit alpha [Synechococcus sp. WH 7805]
SynWH7803_2157 GO term Molecular Function: transcription termination factor activity (GO:0003715)
InterPro IPR011112 Rho termination factor, N-terminal; HMMPfam:PF07498 Rho_N
InterPro IPR011112 Rho termination factor, N-terminal; superfamily:SSF68912 Rho_N
Blast Hits [sprot] RHO_MICLU (sp|P52154) Transcription termination factor rho OS=Micrococcus luteus GN=rho PE=1 SV=3
SynWH7803_2173 InterPro IPR004619 Bordetella pertussis Bvg accessory factor; HMMPfam:PF03309 Bvg_acc_factor
InterPro IPR004619 Bordetella pertussis Bvg accessory factor; HMMTigr:TIGR00671 baf
SynWH7803_2405 InterPro IPR008514 Virulence factor, secretion apparatus; Gene3D:G3DSA:2.30.110.20 Flv_reduc_FMN_bd
SynWH7803_2406 InterPro IPR008514 Virulence factor, secretion apparatus; Gene3D:G3DSA:2.30.110.20 Flv_reduc_FMN_bd
SynWH7803_2451 GO term Molecular Function: translation release factor activity (GO:0003747)
InterPro IPR000352 Class I peptide chain release factor; HMMPfam:PF00472 RF-1
Blast Hits [TAIR_pep] AT1G62850.3 | Symbols: | translation release factor | chr1:23272608-23274211 REVERSE
SynWH7803_2459 Gene product Alternative RNA polymerase sigma factor, sigma-70 family
GO term Molecular Function: sigma factor activity (GO:0016987)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000943 RNA polymerase sigma-70 factor; FPrintScan:PR00046 SIGMA70FCT
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00715 SIGMA70_1
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00716 SIGMA70_2
InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
InterPro IPR017848 RNA polymerase sigma factor, RpoD-like, cyanobacteria; HMMTigr:TIGR02997 Sig70-cyanoRpoD
Blast Hits [TAIR_pep] AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr1:2703461-2706696 FORWARD
Blast Hits [nr] ref|ZP_01124974.1| possible type II alternative RNA polymerase sigma factor [Synechococcus sp. WH 7805] gi|88786685|gb|EAR17844.1| possible type II alternative RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Blast Hits [sprot] RPSC_ANASP (sp|Q03066) RNA polymerase sigma-C factor OS=Anabaena sp. (strain PCC 7120) GN=sigC PE=3 SV=2
SynWH7803_2478 Gene product Molybdenum cofactor biosynthesis protein A
GO term Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777)
InterPro IPR010505 Molybdenum cofactor synthesis C-terminal; HMMPfam:PF06463 Mob_synth_C
InterPro IPR013483 Molybdenum cofactor biosynthesis protein A; HMMTigr:TIGR02666 moaA
Blast Hits [TAIR_pep] AT2G31955.2 | Symbols: CNX2 | CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2); catalytic | chr2:13584635-13586484 REVERSE
Blast Hits [nr] ref|ZP_01124932.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. WH 7805] gi|88786643|gb|EAR17802.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. WH 7805]
Blast Hits [sprot] MOAA_SYNSC (sp|Q3AGB7) Molybdenum cofactor biosynthesis protein A OS=Synechococcus sp. (strain CC9605) GN=moaA PE=3 SV=1
SynWH7803_2484 Gene product Molybdenum cofactor biosynthesis protein C
GO term Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777)
InterPro IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain; Gene3D:G3DSA:3.30.70.640 MoaC_reg
InterPro IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain; HMMPfam:PF01967 MoaC
InterPro IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain; HMMTigr:TIGR00581 moaC
InterPro IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain; superfamily:SSF55040 MoaC
Blast Hits [TAIR_pep] AT1G01290.2 | Symbols: CNX3 | CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3); catalytic | chr1:114299-115296 FORWARD
Blast Hits [nr] ref|ZP_01124923.1| molybdenum cofactor biosynthesis protein C [Synechococcus sp. WH 7805] gi|88786634|gb|EAR17793.1| molybdenum cofactor biosynthesis protein C [Synechococcus sp. WH 7805]
Blast Hits [sprot] MOAC_SYNS9 (sp|Q3AVP2) Molybdenum cofactor biosynthesis protein C OS=Synechococcus sp. (strain CC9902) GN=moaC PE=3 SV=1
SynWH7803_2485 GO term Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777)
GO term Biological Process: molybdopterin cofactor biosynthetic process (GO:0032324)
InterPro IPR020817 Molybdenum cofactor synthesis; HMMTigr:TIGR00177 molyb_syn
SynWH7803_2488 Gene product Molybdenum cofactor biosynthesis protein B
GO term Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777)
InterPro IPR012245 Molybdenum cofactor biosynthesis protein MoaB; HMMPIR:PIRSF006443 MoaB
InterPro IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria; HMMTigr:TIGR02667 moaB_proteo
InterPro IPR020817 Molybdenum cofactor synthesis; HMMTigr:TIGR00177 molyb_syn
Blast Hits [sprot] MOAB_ECOLI (sp|P0AEZ9) Molybdenum cofactor biosynthesis protein B OS=Escherichia coli (strain K12) GN=moaB PE=1 SV=2
SynWH7803_2501 Gene product Alternative RNA polymerase sigma factor, sigma-70 family
GO term Molecular Function: sigma factor activity (GO:0016987)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000943 RNA polymerase sigma-70 factor; FPrintScan:PR00046 SIGMA70FCT
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00715 SIGMA70_1
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00716 SIGMA70_2
InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
InterPro IPR017848 RNA polymerase sigma factor, RpoD-like, cyanobacteria; HMMTigr:TIGR02997 Sig70-cyanoRpoD
Blast Hits [TAIR_pep] AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr2:15537502-15540016 REVERSE
Blast Hits [nr] ref|ZP_01124904.1| Type II alternative RNA polymerase sigma factor, sigma-70 family protein [Synechococcus sp. WH 7805] gi|88786615|gb|EAR17774.1| Type II alternative RNA polymerase sigma factor, sigma-70 family protein [Synechococcus sp. WH 7805]
Blast Hits [sprot] RPOD4_SYNE7 (sp|Q31QR8) RNA polymerase sigma factor rpoD4 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD4 PE=3 SV=1
SynWH7803_2517 InterPro IPR014717 Translation elongation factor EF1B/ribosomal protein S6; Gene3D:G3DSA:3.30.70.60 Transl_elong_EF1B/rib_con
SynWH7803_2218 Gene product Ribosome-binding factor A
InterPro IPR000238 Ribosome-binding factor A; BlastProDom:PD007327 Rib_bd_factA
InterPro IPR000238 Ribosome-binding factor A; HMMPfam:PF02033 RBFA
InterPro IPR000238 Ribosome-binding factor A; HMMTigr:TIGR00082 rbfA
InterPro IPR000238 Ribosome-binding factor A; superfamily:SSF89919 Rib_bd_factA
InterPro IPR020053 Ribosome-binding factor A, conserved site; PatternScan:PS01319 RBFA
Blast Hits [TAIR_pep] AT4G34730.1 | Symbols: | ribosome-binding factor A family protein | chr4:16570019-16571274 REVERSE
Blast Hits [nr] ref|ZP_01122643.1| possible Ribosome-binding factor A [Synechococcus sp. WH 7805] gi|88788345|gb|EAR19500.1| possible Ribosome-binding factor A [Synechococcus sp. WH 7805]
Blast Hits [sprot] RBFA_SYNS9 (sp|Q3B014) Ribosome-binding factor A OS=Synechococcus sp. (strain CC9902) GN=rbfA PE=3 SV=1
SynWH7803_2301 Gene product Translation initiation factor SUI1
GO term Molecular Function: translation initiation factor activity (GO:0003743)
InterPro IPR001950 Translation initiation factor SUI1; HMMPfam:PF01253 SUI1
InterPro IPR001950 Translation initiation factor SUI1; ProfileScan:PS50296 SUI1
InterPro IPR001950 Translation initiation factor SUI1; superfamily:SSF55159 TIF_SUI1
InterPro IPR017228 Translation initiation factor 1, prokaryotic; HMMPIR:PIRSF037511 Transl_init_SUI1_pro
Blast Hits [TAIR_pep] AT5G54940.2 | Symbols: | eukaryotic translation initiation factor SUI1, putative | chr5:22308420-22308758 REVERSE
Blast Hits [nr] ref|YP_382706.1| translation initiation factor 1 (eIF-1/SUI1) [Synechococcus sp. CC9605] gi|78198386|gb|ABB36151.1| putative translation initiation factor SUI1 [Synechococcus sp. CC9605]
SynWH7803_2325 Gene product peptide chain release factor 2
GO term Molecular Function: translation release factor activity (GO:0003747)
GO term Molecular Function: translation release factor activity, codon specific (GO:0016149)
InterPro IPR000352 Class I peptide chain release factor; HMMPfam:PF00472 RF-1
InterPro IPR000352 Class I peptide chain release factor; PatternScan:PS00745 RF_PROK_I
InterPro IPR004374 Peptide chain release factor 2; HMMPanther:PTHR11075:SF6 PrfB
InterPro IPR004374 Peptide chain release factor 2; HMMTigr:TIGR00020 prfB
InterPro IPR005139 Peptide chain release factor; HMMPfam:PF03462 PCRF
Blast Hits [TAIR_pep] AT5G36170.2 | Symbols: HCF109, ATPRFB | HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109); translation release factor/ translation release factor, codon specific | chr5:14236083-14237974 REVERSE
Blast Hits [nr] ref|ZP_01125371.1| peptide chain release factor 2 [Synechococcus sp. WH 7805] gi|88786249|gb|EAR17410.1| peptide chain release factor 2 [Synechococcus sp. WH 7805]
Blast Hits [sprot] RF2_SYNPX (sp|Q7U3W6) Peptide chain release factor 2 OS=Synechococcus sp. (strain WH8102) GN=prfB PE=3 SV=1
SynWH7803_0010 GO term Molecular Function: transcription termination factor activity (GO:0003715)
InterPro IPR011605 NusB antitermination factor; HMMTigr:TIGR01951 nusB
SynWH7803_0022 GO term Molecular Function: adenyl-nucleotide exchange factor activity (GO:0000774)
InterPro IPR000740 GrpE nucleotide exchange factor; FPrintScan:PR00773 GRPEPROTEIN
InterPro IPR000740 GrpE nucleotide exchange factor; HMMPanther:PTHR21237 GrpE
InterPro IPR000740 GrpE nucleotide exchange factor; HMMPfam:PF01025 GrpE
InterPro IPR000740 GrpE nucleotide exchange factor; PatternScan:PS01071 GRPE
InterPro IPR009012 GrpE nucleotide exchange factor, head; Gene3D:G3DSA:2.30.22.10 GrpE_head
InterPro IPR009012 GrpE nucleotide exchange factor, head; superfamily:SSF51064 GrpE_head
InterPro IPR013805 GrpE nucleotide exchange factor, coiled-coil; Gene3D:G3DSA:3.90.20.20 GrpE_coiled_coil
Blast Hits [TAIR_pep] AT5G17710.2 | Symbols: EMB1241 | EMB1241 (embryo defective 1241); adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization | chr5:5839560-5841639 REVERSE
SynWH7803_0071 Gene product trigger factor
InterPro IPR005215 Trigger factor; HMMPIR:PIRSF003095 Trigger_factor
InterPro IPR005215 Trigger factor; HMMTigr:TIGR00115 tig
InterPro IPR008880 Trigger factor, C-terminal, bacterial; HMMPfam:PF05698 Trigger_C
InterPro IPR008880 Trigger factor, C-terminal, bacterial; superfamily:SSF109998 Trigger_fac_C_bac
InterPro IPR008881 Trigger factor, ribosome-binding, bacterial; HMMPfam:PF05697 Trigger_N
InterPro IPR008881 Trigger factor, ribosome-binding, bacterial; superfamily:SSF102735 Trigger_fac_ribosome-bd_bac
Blast Hits [TAIR_pep] AT5G55220.1 | Symbols: | trigger factor type chaperone family protein | chr5:22397677-22400678 FORWARD
Blast Hits [nr] ref|ZP_01125464.1| trigger factor [Synechococcus sp. WH 7805] gi|88786149|gb|EAR17311.1| trigger factor [Synechococcus sp. WH 7805]
Blast Hits [sprot] TIG_SYNS3 (sp|Q0IE18) Trigger factor OS=Synechococcus sp. (strain CC9311) GN=tig PE=3 SV=1
SynWH7803_0145 Gene product translation initiation factor IF-3
GO term Molecular Function: translation initiation factor activity (GO:0003743)
InterPro IPR001288 Translation initiation factor 3; HMMPanther:PTHR10938 IF3
InterPro IPR001288 Translation initiation factor 3; HMMTigr:TIGR00168 infC
InterPro IPR019813 Translation initiation factor 3, conserved site; PatternScan:PS00938 IF3
InterPro IPR019814 Translation initiation factor 3, N-terminal; Gene3D:G3DSA:3.10.20.80 IF3
InterPro IPR019814 Translation initiation factor 3, N-terminal; HMMPfam:PF05198 IF3_N
InterPro IPR019814 Translation initiation factor 3, N-terminal; superfamily:SSF54364 IF3
InterPro IPR019815 Translation initiation factor 3, C-terminal; Gene3D:G3DSA:3.30.110.10 IF3
InterPro IPR019815 Translation initiation factor 3, C-terminal; HMMPfam:PF00707 IF3_C
InterPro IPR019815 Translation initiation factor 3, C-terminal; superfamily:SSF55200 IF3
Blast Hits [TAIR_pep] AT2G24060.1 | Symbols: | translation initiation factor 3 (IF-3) family protein | chr2:10229453-10231390 FORWARD
Blast Hits [nr] ref|ZP_01125425.1| translation initiation factor IF-3 [Synechococcus sp. WH 7805] gi|88786110|gb|EAR17272.1| translation initiation factor IF-3 [Synechococcus sp. WH 7805]
Blast Hits [sprot] IF3_SYNSC (sp|Q3ANG8) Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9605) GN=infC PE=3 SV=1
SynWH7803_0153 Gene product Alternative RNA polymerase sigma factor, sigma-70 family
GO term Molecular Function: sigma factor activity (GO:0016987)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000943 RNA polymerase sigma-70 factor; FPrintScan:PR00046 SIGMA70FCT
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00715 SIGMA70_1
InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
InterPro IPR017848 RNA polymerase sigma factor, RpoD-like, cyanobacteria; HMMTigr:TIGR02997 Sig70-cyanoRpoD
Blast Hits [TAIR_pep] AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr2:15537502-15540016 REVERSE
Blast Hits [nr] ref|ZP_01125417.1| type II alternative RNA polymerase sigma factor, sigma-70 family protein [Synechococcus sp. WH 7805] gi|88786102|gb|EAR17264.1| type II alternative RNA polymerase sigma factor, sigma-70 family protein [Synechococcus sp. WH 7805]
Blast Hits [sprot] RPOD2_SYNE7 (sp|Q31ME3) RNA polymerase sigma factor rpoD2 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD2 PE=1 SV=1
SynWH7803_0182 InterPro IPR005532 Sulphatase-modifying factor; HMMPfam:PF03781 DUF323
Blast Hits [sprot] SUMF1_MOUSE (sp|Q8R0F3) Sulfatase-modifying factor 1 OS=Mus musculus GN=Sumf1 PE=1 SV=2
SynWH7803_0032 Gene product elongation factor P
GO term Molecular Function: translation elongation factor activity (GO:0003746)
InterPro IPR001059 Translation elongation factor P/YeiP, central; HMMPfam:PF01132 EFP
InterPro IPR011768 Translation elongation factor P; HAMAP:MF_00141 EFP_MF_00141
InterPro IPR011768 Translation elongation factor P; HMMTigr:TIGR00038 efp: translation elongation factor P
InterPro IPR013185 Translation elongation factor, KOW-like; HMMPfam:PF08207 EFP_N
InterPro IPR013852 Translation elongation factor P/YeiP, conserved site; PatternScan:PS01275 EFP
InterPro IPR015365 Elongation factor P, C-terminal; HMMPfam:PF09285 Elong-fact-P_C
InterPro IPR015365 Elongation factor P, C-terminal; HMMSmart:SM00841 no description
InterPro IPR020599 Translation elongation factor P/YeiP; HMMPIR:PIRSF005901 Translation elongation factor P
Blast Hits [TAIR_pep] AT3G08740.1 | Symbols: | elongation factor P (EF-P) family protein | chr3:2654788-2656154 REVERSE
Blast Hits [nr] ref|ZP_05788301.1| translation elongation factor P [Synechococcus sp. WH 8109] gi|260412205|gb|EEX05501.1| translation elongation factor P [Synechococcus sp. WH 8109]
Blast Hits [sprot] EFP_SYNSC (sp|Q3ANM0) Elongation factor P OS=Synechococcus sp. (strain CC9605) GN=efp PE=3 SV=1
SynWH7803_0250 Gene product Uncharacterized protein related to plant photosystem II stability/assembly factor
InterPro IPR016705 Photosystem II stability/assembly factor, HCF136; HMMPIR:PIRSF017875 PSII_HCF136
Blast Hits [nr] ref|ZP_01123596.1| photosystem II stability/assembly factor-like protein [Synechococcus sp. WH 7805] gi|88788124|gb|EAR19280.1| photosystem II stability/assembly factor-like protein [Synechococcus sp. WH 7805]
SynWH7803_0258 InterPro IPR002035 von Willebrand factor, type A; HMMPfam:PF00092 VWA
InterPro IPR002035 von Willebrand factor, type A; HMMSmart:SM00327 VWA
InterPro IPR002035 von Willebrand factor, type A; ProfileScan:PS50234 VWFA
SynWH7803_0379 Gene product elongation factor Tu
GO term Molecular Function: translation elongation factor activity (GO:0003746)
InterPro IPR000795 Protein synthesis factor, GTP-binding; FPrintScan:PR00315 ELONGATNFCT
InterPro IPR000795 Protein synthesis factor, GTP-binding; HMMPfam:PF00009 GTP_EFTU
InterPro IPR000795 Protein synthesis factor, GTP-binding; PatternScan:PS00301 EFACTOR_GTP
InterPro IPR004160 Translation elongation factor EFTu/EF1A, C-terminal; HMMPfam:PF03143 GTP_EFTU_D3
InterPro IPR004161 Translation elongation factor EFTu/EF1A, domain 2; HMMPfam:PF03144 GTP_EFTU_D2
InterPro IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle; HMMPanther:PTHR23115:SF31 Transl_elong_EFTu/EF1A_bac/org
InterPro IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle; HMMTigr:TIGR00485 EF-Tu
InterPro IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel; superfamily:SSF50447 Translat_factor
InterPro IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal; superfamily:SSF50465 Elong_init_C
Blast Hits [TAIR_pep] AT4G20360.1 | Symbols: ATRAB8D, ATRABE1B | ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B); GTP binding / GTPase/ translation elongation factor | chr4:10990036-10991466 FORWARD
Blast Hits [nr] ref|ZP_01123455.1| elongation factor Tu [Synechococcus sp. WH 7805] gi|88787983|gb|EAR19139.1| elongation factor Tu [Synechococcus sp. WH 7805]
Blast Hits [sprot] EFTU_SYNSC (sp|Q3AMT6) Elongation factor Tu OS=Synechococcus sp. (strain CC9605) GN=tuf PE=3 SV=1
SynWH7803_0380 Gene product elongation factor G
GO term Molecular Function: translation elongation factor activity (GO:0003746)
InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; Gene3D:G3DSA:3.30.70.240 Transl_elong_EFG/EF2_C
InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; HMMPfam:PF00679 EFG_C
InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; HMMSmart:SM00838 EFG_C
InterPro IPR000795 Protein synthesis factor, GTP-binding; FPrintScan:PR00315 ELONGATNFCT
InterPro IPR000795 Protein synthesis factor, GTP-binding; HMMPfam:PF00009 GTP_EFTU
InterPro IPR000795 Protein synthesis factor, GTP-binding; PatternScan:PS00301 EFACTOR_GTP
InterPro IPR004161 Translation elongation factor EFTu/EF1A, domain 2; HMMPfam:PF03144 GTP_EFTU_D2
InterPro IPR004540 Translation elongation factor EFG/EF2; HMMTigr:TIGR00484 EF-G
InterPro IPR005517 Translation elongation factor EFG/EF2, domain IV; HMMPfam:PF03764 EFG_IV
InterPro IPR005517 Translation elongation factor EFG/EF2, domain IV; HMMSmart:SM00889 EFG_IV
InterPro IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel; superfamily:SSF50447 Translat_factor
InterPro IPR009022 Elongation factor G/III/V; superfamily:SSF54980 EFG_III_V
Blast Hits [TAIR_pep] AT1G62750.1 | Symbols: ATSCO1, ATSCO1/CPEF-G, SCO1 | SCO1 (SNOWY COTYLEDON 1); ATP binding / translation elongation factor/ translation factor, nucleic acid binding | chr1:23233622-23236321 REVERSE
Blast Hits [nr] ref|ZP_01123454.1| elongation factor EF-2 [Synechococcus sp. WH 7805] gi|88787982|gb|EAR19138.1| elongation factor EF-2 [Synechococcus sp. WH 7805]
Blast Hits [sprot] EFG_SYNS9 (sp|Q3AW54) Elongation factor G OS=Synechococcus sp. (strain CC9902) GN=fusA PE=3 SV=1
SynWH7803_0405 Gene product peptide chain release factor 1
GO term Molecular Function: translation release factor activity (GO:0003747)
GO term Molecular Function: translation release factor activity, codon specific (GO:0016149)
InterPro IPR000352 Class I peptide chain release factor; HMMPfam:PF00472 RF-1
InterPro IPR000352 Class I peptide chain release factor; PatternScan:PS00745 RF_PROK_I
InterPro IPR004373 Peptide chain release factor 1; HMMTigr:TIGR00019 prfA
InterPro IPR005139 Peptide chain release factor; HMMPfam:PF03462 PCRF
Blast Hits [TAIR_pep] AT3G62910.1 | Symbols: APG3 | APG3 (ALBINO AND PALE GREEN); translation release factor/ translation release factor, codon specific | chr3:23257661-23260386 REVERSE
Blast Hits [nr] ref|ZP_01123425.1| peptide chain release factor 1 [Synechococcus sp. WH 7805] gi|88787953|gb|EAR19109.1| peptide chain release factor 1 [Synechococcus sp. WH 7805]
Blast Hits [sprot] RF1_SYNS3 (sp|Q0ID34) Peptide chain release factor 1 OS=Synechococcus sp. (strain CC9311) GN=prfA PE=3 SV=1
SynWH7803_0434 InterPro IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel; superfamily:SSF50447 Translat_factor
SynWH7803_0448 InterPro IPR009036 Molybdenum cofactor biosynthesis, MoeB; superfamily:SSF69572 MoeB
Blast Hits [TAIR_pep] AT5G55130.1 | Symbols: CNX5, SIR1 | CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5); Mo-molybdopterin cofactor sulfurase | chr5:22373374-22376028 REVERSE
SynWH7803_0524 InterPro IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific; HMMTigr:TIGR03534 RF_mod_HemK
SynWH7803_0528 Gene product Cell division topological specificity factor
InterPro IPR005527 Septum formation topological specificity factor MinE; HMMPfam:PF03776 MinE
InterPro IPR005527 Septum formation topological specificity factor MinE; HMMTigr:TIGR01215 minE
Blast Hits [sprot] MINE_SYNS3 (sp|Q0ICQ3) Cell division topological specificity factor OS=Synechococcus sp. (strain CC9311) GN=minE PE=3 SV=1
SynWH7803_0559 InterPro IPR003347 Transcription factor jumonji/aspartyl beta-hydroxylase; ProfileScan:PS51184 JMJC
Blast Hits [TAIR_pep] AT3G20810.2 | Symbols: | transcription factor jumonji (jmjC) domain-containing protein | chr3:7275814-7278144 FORWARD
SynWH7803_0611 Gene product RNA polymerase sigma factor RpoD, sigma-70 family
GO term Molecular Function: sigma factor activity (GO:0016987)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000943 RNA polymerase sigma-70 factor; FPrintScan:PR00046 SIGMA70FCT
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00715 SIGMA70_1
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00716 SIGMA70_2
InterPro IPR012760 RNA polymerase sigma factor RpoD, C-terminal; HMMTigr:TIGR02393 RpoD_Cterm
InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
InterPro IPR017848 RNA polymerase sigma factor, RpoD-like, cyanobacteria; HMMTigr:TIGR02997 Sig70-cyanoRpoD
Blast Hits [TAIR_pep] AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr1:2703461-2706696 FORWARD
Blast Hits [nr] ref|ZP_01123169.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805] gi|88788871|gb|EAR20026.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Blast Hits [sprot] RPOD_ANASP (sp|P26683) RNA polymerase sigma factor rpoD OS=Anabaena sp. (strain PCC 7120) GN=rpoD PE=3 SV=1
SynWH7803_0638 Gene product ribosome recycling factor
InterPro IPR002661 Ribosome recycling factor; HMMPanther:PTHR20982 Ribosome_recyc_fac
InterPro IPR002661 Ribosome recycling factor; HMMPfam:PF01765 RRF
InterPro IPR002661 Ribosome recycling factor; HMMTigr:TIGR00496 frr
InterPro IPR002661 Ribosome recycling factor; superfamily:SSF55194 Ribosome_recyc_fac
InterPro IPR015998 Ribosome recycling factor, bacterial-like; HMMPanther:PTHR20982:SF3 RRF
Blast Hits [TAIR_pep] AT3G63190.1 | Symbols: RRF | RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) | chr3:23342861-23344640 REVERSE
Blast Hits [nr] ref|ZP_05789812.1| ribosome recycling factor [Synechococcus sp. WH 8109] gi|260413716|gb|EEX07012.1| ribosome recycling factor [Synechococcus sp. WH 8109]
Blast Hits [sprot] RRF_SYNSC (sp|Q3ALP8) Ribosome-recycling factor OS=Synechococcus sp. (strain CC9605) GN=frr PE=3 SV=1
SynWH7803_0650 InterPro IPR011324 Cytotoxic necrotizing factor-like, catalytic; superfamily:SSF64438 Cytotoxic_necrot_fac-like_cat
SynWH7803_0719 InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; Gene3D:G3DSA:3.30.750.24 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; HMMPfam:PF01740 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; ProfileScan:PS50801 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; superfamily:SSF52091 STAS
SynWH7803_0742 Gene product Alternative RNA polymerase sigma factor, sigma-70 family
GO term Molecular Function: sigma factor activity (GO:0016987)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000943 RNA polymerase sigma-70 factor; FPrintScan:PR00046 SIGMA70FCT
InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
Blast Hits [TAIR_pep] AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr2:15537502-15540016 REVERSE
Blast Hits [nr] ref|ZP_05789963.1| possible type II alternative RNA polymerase sigma factor [Synechococcus sp. WH 8109] gi|260413867|gb|EEX07163.1| possible type II alternative RNA polymerase sigma factor [Synechococcus sp. WH 8109]
Blast Hits [sprot] RPOD4_SYNE7 (sp|Q31QR8) RNA polymerase sigma factor rpoD4 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD4 PE=3 SV=1
SynWH7803_0929 InterPro IPR002075 Nuclear transport factor 2; HMMPfam:PF02136 NTF2
Blast Hits [TAIR_pep] AT1G71480.1 | Symbols: | nuclear transport factor 2 (NTF2) family protein | chr1:26932079-26933086 FORWARD
SynWH7803_0947 Gene product Macrophage migration inhibitory factor domain containing protein
InterPro IPR001398 Macrophage migration inhibitory factor; BlastProDom:PD004816 Macrophage_inhib_fac
InterPro IPR001398 Macrophage migration inhibitory factor; HMMPanther:PTHR11954 MIF
InterPro IPR001398 Macrophage migration inhibitory factor; HMMPfam:PF01187 MIF
Blast Hits [TAIR_pep] AT5G57170.1 | Symbols: | macrophage migration inhibitory factor family protein / MIF family protein | chr5:23162201-23163140 REVERSE
Blast Hits [sprot] MIF_SHEEP (sp|Q1ZZU7) Macrophage migration inhibitory factor OS=Ovis aries GN=MIF PE=3 SV=1
SynWH7803_1062 Gene product Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; Gene3D:G3DSA:3.30.750.24 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; HMMPfam:PF01740 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; ProfileScan:PS50801 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; superfamily:SSF52091 STAS
Blast Hits [nr] ref|ZP_01123936.1| anti-anti-sigma regulatory factor, SpoIIAA [Synechococcus sp. WH 7805] gi|88787414|gb|EAR18571.1| anti-anti-sigma regulatory factor, SpoIIAA [Synechococcus sp. WH 7805]
Blast Hits [sprot] Y1442_THEMA (sp|Q9X1F5) Putative anti-sigma factor antagonist TM_1442 OS=Thermotoga maritima GN=TM_1442 PE=1 SV=1
SynWH7803_0525 Gene product Possible translation factor
Blast Hits [sprot] RIMN_SHESR (sp|Q0I0R7) Putative ribosome maturation factor rimN OS=Shewanella sp. (strain MR-7) GN=rimN PE=3 SV=1
SynWH7803_0612 Gene product Primosomal protein N' (replication factor Y)
Blast Hits [nr] ref|ZP_01123171.1| primosomal protein N' (replication factor Y) [Synechococcus sp. WH 7805] gi|88788873|gb|EAR20028.1| primosomal protein N' (replication factor Y) [Synechococcus sp. WH 7805]
SynWH7803_2168 Gene product recombination factor protein RarA/unknown domain fusion protein
SynWH7803_2486 Gene product Molybdopterin converting factor subunit 2
GO term Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777)
Blast Hits [nr] ref|ZP_01124921.1| molybdenum cofactor biosynthesis protein E [Synechococcus sp. WH 7805] gi|88786632|gb|EAR17791.1| molybdenum cofactor biosynthesis protein E [Synechococcus sp. WH 7805]
SynWH7803_2487 Gene product Molybdopterin converting factor subunit 1
Blast Hits [nr] ref|ZP_01124920.1| molydbenum cofactor biosynthesis protein D (molybdopterin converting factor small subunit) [Synechococcus sp. WH 7805] gi|88786631|gb|EAR17790.1| molydbenum cofactor biosynthesis protein D (molybdopterin converting factor small subunit) [Synechococcus sp. WH 7805]
SynWH7803_0143 GO term Molecular Function: transcription factor activity (GO:0003700)
SynWH7803_0197 GO term Molecular Function: cofactor binding (GO:0048037)
Blast Hits [TAIR_pep] AT2G44620.1 | Symbols: MTACP-1, MTACP1 | MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1); acyl carrier/ cofactor binding / phosphopantetheine binding | chr2:18414320-18415065 FORWARD
SynWH7803_0305 GO term Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777)
SynWH7803_0319 GO term Molecular Function: transcription factor activity (GO:0003700)
SynWH7803_0527 GO term Molecular Function: transcription factor activity (GO:0003700)
SynWH7803_0899 GO term Molecular Function: transcription factor activity (GO:0003700)
SynWH7803_0923 GO term Molecular Function: transcription factor activity (GO:0003700)
SynWH7803_1122 GO term Biological Process: cofactor biosynthetic process (GO:0051188)
SynWH7803_1162 GO term Molecular Function: transcription factor activity (GO:0003700)
SynWH7803_1046 GO term Molecular Function: transcription factor activity (GO:0003700)
SynWH7803_1392 GO term Molecular Function: transcription factor activity (GO:0003700)
Blast Hits [TAIR_pep] AT3G05545.1 | Symbols: | transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein | chr3:1609436-1612133 FORWARD
SynWH7803_1461 GO term Molecular Function: transcription factor activity (GO:0003700)
SynWH7803_1530 GO term Biological Process: cofactor metabolic process (GO:0051186)
SynWH7803_1702 GO term Molecular Function: transcription factor activity (GO:0003700)
SynWH7803_1948 GO term Molecular Function: transcription factor activity (GO:0003700)
SynWH7803_1981 GO term Molecular Function: cofactor binding (GO:0048037)
SynWH7803_2019 GO term Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263)
SynWH7803_2020 GO term Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263)
SynWH7803_2022 GO term Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263)
SynWH7803_2023 GO term Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263)
SynWH7803_2070 GO term Molecular Function: transcription factor activity (GO:0003700)
SynWH7803_2153 GO term Molecular Function: transcription factor activity (GO:0003700)
SynWH7803_2021 GO term Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263)
SynWH7803_2447 GO term Molecular Function: transcription factor activity (GO:0003700)
SynWH7803_2276 GO term Molecular Function: transcription factor activity (GO:0003700)
SynWH7803_2284 GO term Molecular Function: transcription factor activity (GO:0003700)
Blast Hits [TAIR_pep] AT2G23380.1 | Symbols: CLF, ICU1, SDG1, SET1 | CLF (CURLY LEAF); transcription factor | chr2:9955570-9960117 FORWARD
SynWH7803_2309 GO term Molecular Function: transcription factor activity (GO:0003700)
SynWH7803_2344 GO term Molecular Function: transcription factor activity (GO:0003700)
SynWH7803_1281 Blast Hits [nr] ref|ZP_01124046.1| possible CsgA C-factor signaling protein [Synechococcus sp. WH 7805] gi|88787524|gb|EAR18681.1| possible CsgA C-factor signaling protein [Synechococcus sp. WH 7805]
Blast Hits [sprot] CSGA_MYXXA (sp|P21158) C-factor OS=Myxococcus xanthus GN=csgA PE=1 SV=1
SynWH7803_0041 Blast Hits [sprot] RF1_FRASC (sp|Q2J6M0) Peptide chain release factor 1 OS=Frankia sp. (strain CcI3) GN=prfA PE=3 SV=1
SynWH7803_0201 Blast Hits [sprot] RIMM_SYNS9 (sp|Q3B0H7) Ribosome maturation factor rimM OS=Synechococcus sp. (strain CC9902) GN=rimM PE=3 SV=1
SynWH7803_0202 Blast Hits [sprot] SPT5_CANGA (sp|Q6FRZ5) Transcription elongation factor SPT5 OS=Candida glabrata GN=SPT5 PE=3 SV=1
SynWH7803_0239 Blast Hits [sprot] BTAF1_HUMAN (sp|O14981) TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2
SynWH7803_0271 Blast Hits [sprot] RF1_BRAJA (sp|Q89XT9) Peptide chain release factor 1 OS=Bradyrhizobium japonicum GN=prfA PE=3 SV=1
SynWH7803_0299 Blast Hits [sprot] MVIN_SYNY3 (sp|Q55179) Virulence factor mviN homolog OS=Synechocystis sp. (strain PCC 6803) GN=mviN PE=3 SV=1
SynWH7803_0347 Blast Hits [sprot] MOAC_THEP3 (sp|B0K8Q5) Molybdenum cofactor biosynthesis protein C OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=moaC PE=3 SV=1
SynWH7803_0570 Blast Hits [sprot] DCAF7_MOUSE (sp|P61963) DDB1- and CUL4-associated factor 7 OS=Mus musculus GN=Dcaf7 PE=2 SV=1
SynWH7803_0635 Blast Hits [sprot] CNGA2_MOUSE (sp|Q62398) Cyclic nucleotide-gated olfactory channel OS=Mus musculus GN=Cnga2 PE=2 SV=1
SynWH7803_0726 Blast Hits [sprot] IF2_CARHZ (sp|Q3AB98) Translation initiation factor IF-2 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=infB PE=3 SV=1
SynWH7803_0856 Blast Hits [sprot] CSGA_MYXXA (sp|P21158) C-factor OS=Myxococcus xanthus GN=csgA PE=1 SV=1
SynWH7803_0917 Blast Hits [sprot] IF2_POLNA (sp|A1VNU2) Translation initiation factor IF-2 OS=Polaromonas naphthalenivorans (strain CJ2) GN=infB PE=3 SV=1
SynWH7803_0944 Blast Hits [sprot] RFCL_METB6 (sp|A7I781) Replication factor C large subunit OS=Methanoregula boonei (strain 6A8) GN=rfcL PE=3 SV=1
SynWH7803_0956 Blast Hits [sprot] MOAA_PYRKO (sp|Q5JHN5) Probable molybdenum cofactor biosynthesis protein A OS=Pyrococcus kodakaraensis GN=moaA PE=3 SV=1
SynWH7803_0962 Blast Hits [sprot] ARHGC_HUMAN (sp|Q9NZN5) Rho guanine nucleotide exchange factor 12 OS=Homo sapiens GN=ARHGEF12 PE=1 SV=1
SynWH7803_0975 Blast Hits [sprot] IKKB_HUMAN (sp|O14920) Inhibitor of nuclear factor kappa-B kinase subunit beta OS=Homo sapiens GN=IKBKB PE=1 SV=1
SynWH7803_1180 Blast Hits [sprot] TF3B_SCHPO (sp|Q9P6R0) Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces pombe GN=brf1 PE=1 SV=1
SynWH7803_1207 Blast Hits [sprot] RP542_RHIME (sp|P33985) RNA polymerase sigma-54 factor OS=Rhizobium meliloti GN=rpoN PE=3 SV=1
SynWH7803_1265 Blast Hits [sprot] IF2_BACP2 (sp|A8FDD1) Translation initiation factor IF-2 OS=Bacillus pumilus (strain SAFR-032) GN=infB PE=3 SV=1
SynWH7803_1331 Blast Hits [sprot] ACE1_TRIRE (sp|Q9P8W3) Zinc finger transcription factor ace1 OS=Trichoderma reesei GN=ace1 PE=4 SV=1
SynWH7803_1359 Blast Hits [sprot] IF2P_METVS (sp|A6URS1) Probable translation initiation factor IF-2 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=infB PE=3 SV=1
SynWH7803_1379 Blast Hits [sprot] VAV3_HUMAN (sp|Q9UKW4) Guanine nucleotide exchange factor VAV3 OS=Homo sapiens GN=VAV3 PE=1 SV=1
SynWH7803_1395 Blast Hits [TAIR_pep] AT2G31955.2 | Symbols: CNX2 | CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2); catalytic | chr2:13584635-13586484 REVERSE
Blast Hits [sprot] MOAA_SULTO (sp|Q971H1) Probable molybdenum cofactor biosynthesis protein A OS=Sulfolobus tokodaii GN=moaA PE=3 SV=1
SynWH7803_1397 Blast Hits [sprot] EFTU1_THETH (sp|P60338) Elongation factor Tu-A OS=Thermus thermophilus GN=tufA PE=1 SV=2
SynWH7803_1610 Blast Hits [sprot] RF2_NAUPA (sp|B9L5Y7) Peptide chain release factor 2 OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=prfB PE=3 SV=1
SynWH7803_1807 Blast Hits [sprot] EFG_ANASP (sp|Q8YP62) Elongation factor G OS=Anabaena sp. (strain PCC 7120) GN=fusA PE=3 SV=1
SynWH7803_1953 Blast Hits [sprot] Y7813_DICDI (sp|Q54YP8) TNF receptor-associated factor family protein DDB_G0278133 OS=Dictyostelium discoideum GN=DDB_G0278133 PE=3 SV=1
SynWH7803_2076 Blast Hits [sprot] RIMP_SYNS3 (sp|Q0I7K5) Ribosome maturation factor rimP OS=Synechococcus sp. (strain CC9311) GN=rimP PE=3 SV=1
SynWH7803_2257 Blast Hits [sprot] CSTF2_MOUSE (sp|Q8BIQ5) Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1 SV=2
SynWH7803_2508 Blast Hits [sprot] OR8B4_HUMAN (sp|Q96RC9) Olfactory receptor 8B4 OS=Homo sapiens GN=OR8B4 PE=2 SV=2
SynWH7803_1870 Blast Hits [pln_est] gb|FP047615|FP047615 FP047615 LG0AAC Quercus petraea cDNA clone LG0AAC20YH13RM1 similar to PplGI.3|TC73505 weakly similar to GB|AAD08639.1|3603230|AF026850 cytochrome oxidase assembly factor {Homo sapiens}, mRNA sequence.
SynWH7803_1882 Blast Hits [pln_est] gb|GO532355|GO532355 Mdltb7523F14.g1 Apple_EST_Mdltb Malus x domestica cDNA 5' similar to dbj|BAA75684.1| transfactor [Nicotiana tabacum], mRNA sequence.
SynWH7803_0024 Blast Hits [TAIR_pep] AT5G52830.1 | Symbols: WRKY27, ATWRKY27 | WRKY27; transcription factor | chr5:21410996-21412218 FORWARD
SynWH7803_0301 Blast Hits [TAIR_pep] AT1G11950.1 | Symbols: | transcription factor | chr1:4034747-4038310 REVERSE
SynWH7803_0317 Blast Hits [TAIR_pep] AT4G32010.1 | Symbols: HSL1, HSI2-L1, VAL2 | HSL1 (HSI2-LIKE 1); transcription factor | chr4:15481231-15484897 FORWARD
SynWH7803_0340 Blast Hits [TAIR_pep] AT3G10800.1 | Symbols: BZIP28 | BZIP28; DNA binding / transcription factor | chr3:3379326-3381430 FORWARD
SynWH7803_0342 Blast Hits [TAIR_pep] AT1G62490.1 | Symbols: | mitochondrial transcription termination factor-related / mTERF-related | chr1:23130405-23131533 REVERSE
SynWH7803_0463 Blast Hits [TAIR_pep] AT3G26710.1 | Symbols: CCB1 | CCB1 (COFACTOR ASSEMBLY OF COMPLEX C) | chr3:9813550-9814606 FORWARD
SynWH7803_0583 Blast Hits [TAIR_pep] AT2G18280.2 | Symbols: AtTLP2 | AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor | chr2:7946754-7948176 FORWARD
SynWH7803_0588 Blast Hits [TAIR_pep] AT1G13260.1 | Symbols: RAV1 | RAV1; DNA binding / transcription factor/ transcription repressor | chr1:4542386-4543420 FORWARD
SynWH7803_0684 Blast Hits [TAIR_pep] AT5G04290.1 | Symbols: KTF1 | KTF1 (KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1); nucleotide binding | chr5:1196069-1202653 FORWARD
SynWH7803_0711 Blast Hits [TAIR_pep] AT1G62085.1 | Symbols: | mitochondrial transcription termination factor family protein / mTERF family protein | chr1:22948757-22950142 REVERSE
SynWH7803_0775 Blast Hits [TAIR_pep] AT4G02020.1 | Symbols: EZA1, SWN, SDG10 | SWN (SWINGER); transcription factor | chr4:886693-891743 FORWARD
SynWH7803_0781 Blast Hits [TAIR_pep] AT4G16340.1 | Symbols: SPK1 | SPK1 (SPIKE1); GTP binding / GTPase binding / guanyl-nucleotide exchange factor | chr4:9228773-9241060 REVERSE
SynWH7803_0793 Blast Hits [TAIR_pep] AT5G65330.1 | Symbols: AGL78 | AGL78 (AGAMOUS-LIKE 78); transcription factor | chr5:26110326-26111351 FORWARD
SynWH7803_0795 Blast Hits [TAIR_pep] AT3G14980.1 | Symbols: | PHD finger transcription factor, putative | chr3:5039931-5044811 REVERSE
SynWH7803_0797 Blast Hits [TAIR_pep] AT4G17600.1 | Symbols: LIL3:1 | LIL3:1; transcription factor | chr4:9803759-9804714 FORWARD
SynWH7803_0807 Blast Hits [TAIR_pep] AT1G75410.2 | Symbols: BLH3 | BLH3 (BEL1-LIKE HOMEODOMAIN 3); DNA binding / transcription factor | chr1:28300095-28301890 REVERSE
SynWH7803_0811 Blast Hits [TAIR_pep] AT5G55020.1 | Symbols: ATMYB120, MYB120 | MYB120 (MYB DOMAIN PROTEIN 120); DNA binding / transcription factor | chr5:22324599-22326248 REVERSE
SynWH7803_0902 Blast Hits [TAIR_pep] AT1G09250.1 | Symbols: | transcription factor | chr1:2989509-2990132 FORWARD
SynWH7803_0920 Blast Hits [TAIR_pep] AT3G19760.1 | Symbols: | eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative | chr3:6863790-6866242 FORWARD
SynWH7803_0937 Blast Hits [TAIR_pep] AT4G17600.1 | Symbols: LIL3:1 | LIL3:1; transcription factor | chr4:9803759-9804714 FORWARD
SynWH7803_0942 Blast Hits [TAIR_pep] AT2G24690.1 | Symbols: | DNA binding / transcription factor | chr2:10499551-10503110 REVERSE
SynWH7803_0946 Blast Hits [TAIR_pep] AT1G47270.1 | Symbols: AtTLP6 | AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor | chr1:17326828-17328564 FORWARD
SynWH7803_0976 Blast Hits [TAIR_pep] AT5G38740.1 | Symbols: AGL77 | AGL77 (AGAMOUS-LIKE 77); transcription factor | chr5:15513025-15514305 REVERSE
SynWH7803_0992 Blast Hits [TAIR_pep] AT4G18020.3 | Symbols: APRR2, PRR2 | APRR2; transcription factor/ two-component response regulator | chr4:10003738-10006682 REVERSE
SynWH7803_1000 Blast Hits [TAIR_pep] AT3G46450.1 | Symbols: | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr3:17093297-17095319 REVERSE
SynWH7803_1010 Blast Hits [TAIR_pep] AT1G32150.1 | Symbols: | bZIP transcription factor family protein | chr1:11566022-11568317 FORWARD
SynWH7803_1054 Blast Hits [TAIR_pep] AT3G24780.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterized conserved protein UCP015417, vWA (InterPro:IPR011205), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13210.1); Has 276 Blast hits to 231 proteins in 34 species: Archae - 0; Bacteria - 26; Metazoa - 5; Fungi - 23; Plants - 46; Viruses - 15; Other Eukaryotes - 161 (source: NCBI BLink). | chr3:9049446-9051593 FORWARD
SynWH7803_1071 Blast Hits [TAIR_pep] AT3G43300.1 | Symbols: ATMIN7 | ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7); guanyl-nucleotide exchange factor/ protein binding | chr3:15234235-15245034 REVERSE
SynWH7803_1106 Blast Hits [TAIR_pep] AT4G29060.2 | Symbols: emb2726 | emb2726 (embryo defective 2726); RNA binding / translation elongation factor | chr4:14317744-14321315 FORWARD
SynWH7803_1126 Blast Hits [TAIR_pep] AT1G59840.2 | Symbols: CCB4 | CCB4 (COFACTOR ASSEMBLY OF COMPLEX C) | chr1:22026569-22028174 FORWARD
SynWH7803_1127 Blast Hits [TAIR_pep] AT3G15510.1 | Symbols: ATNAC2, ANAC056, NARS1 | ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2); transcription factor | chr3:5243696-5245037 FORWARD
SynWH7803_1187 Blast Hits [TAIR_pep] AT4G34000.2 | Symbols: ABF3, DPBF5 | ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3); DNA binding / protein binding / transcription activator/ transcription factor | chr4:16296008-16297971 FORWARD
SynWH7803_1196 Blast Hits [TAIR_pep] AT1G61010.3 | Symbols: CPSF73-I | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I); protein binding | chr1:22474954-22477660 REVERSE
SynWH7803_1221 Blast Hits [TAIR_pep] AT1G25580.1 | Symbols: ANAC008 | ANAC008 (Arabidopsis NAC domain containing protein 8); transcription factor | chr1:8997064-8999600 REVERSE
SynWH7803_1256 Blast Hits [TAIR_pep] AT2G20570.1 | Symbols: GPRI1, GLK1 | GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1); transcription factor/ transcription regulator | chr2:8855486-8857522 FORWARD
SynWH7803_1339 Blast Hits [TAIR_pep] AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor | chr1:18416740-18419753 FORWARD
SynWH7803_1350 Blast Hits [TAIR_pep] AT1G07480.2 | Symbols: | transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) | chr1:2296706-2299215 REVERSE
SynWH7803_1369 Blast Hits [TAIR_pep] AT3G55980.1 | Symbols: SZF1, ATSZF1 | SZF1 (SALT-INDUCIBLE ZINC FINGER 1); transcription factor | chr3:20776857-20778599 FORWARD
SynWH7803_1377 Blast Hits [TAIR_pep] AT5G58080.1 | Symbols: ARR18 | ARR18 (ARABIDOPSIS RESPONSE REGULATOR 18); transcription factor/ two-component response regulator | chr5:23501785-23504099 REVERSE
SynWH7803_1385 Blast Hits [TAIR_pep] AT2G25180.1 | Symbols: ARR12 | ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12); transcription factor/ two-component response regulator | chr2:10724490-10726961 REVERSE
SynWH7803_1386 Blast Hits [TAIR_pep] AT4G38780.1 | Symbols: | splicing factor, putative | chr4:18101438-18111029 REVERSE
SynWH7803_1409 Blast Hits [TAIR_pep] AT2G01760.1 | Symbols: ARR14 | ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14); transcription factor/ two-component response regulator | chr2:333041-334514 FORWARD
SynWH7803_1449 Blast Hits [TAIR_pep] AT2G01760.1 | Symbols: ARR14 | ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14); transcription factor/ two-component response regulator | chr2:333041-334514 FORWARD
SynWH7803_1491 Blast Hits [TAIR_pep] AT3G51140.1 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CDF1 (CELL GROWTH DEFECT FACTOR 1) (TAIR:AT5G23040.1); Has 133 Blast hits to 133 proteins in 42 species: Archae - 0; Bacteria - 60; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr3:18998182-18999437 FORWARD
SynWH7803_1497 Blast Hits [TAIR_pep] AT5G48650.1 | Symbols: | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein | chr5:19727279-19729533 FORWARD
SynWH7803_1515 Blast Hits [TAIR_pep] AT1G13290.1 | Symbols: DOT5 | DOT5 (DEFECTIVELY ORGANIZED TRIBUTARIES 5); transcription factor | chr1:4550366-4551527 REVERSE
SynWH7803_1519 Blast Hits [TAIR_pep] AT2G33860.1 | Symbols: ETT, ARF3 | ETT (ETTIN); DNA binding / transcription factor | chr2:14325444-14328613 REVERSE
SynWH7803_1520 Blast Hits [TAIR_pep] AT5G25080.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146), Exosome-associated factor Rrp47/DNA strand repair C1D (InterPro:IPR011082); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 42; Plants - 16; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr5:8643782-8646306 FORWARD
SynWH7803_1532 Blast Hits [TAIR_pep] AT5G39660.2 | Symbols: CDF2 | CDF2 (CYCLING DOF FACTOR 2); DNA binding / protein binding / transcription factor | chr5:15878920-15880712 FORWARD
SynWH7803_1545 Blast Hits [TAIR_pep] AT3G16857.2 | Symbols: ARR1 | ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1); transcription factor/ two-component response regulator | chr3:5756113-5759139 FORWARD
SynWH7803_1598 Blast Hits [TAIR_pep] AT1G17450.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; CONTAINS InterPro DOMAIN/s: B-block binding subunit of TFIIIC (InterPro:IPR007309); BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT1G59453.1); Has 39 Blast hits to 33 proteins in 8 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:5988643-5996693 REVERSE
SynWH7803_1608 Blast Hits [TAIR_pep] AT1G04950.3 | Symbols: TAFII59 | TAF6 (TBP-ASSOCIATED FACTOR 6); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor | chr1:1403606-1407184 REVERSE
SynWH7803_1636 Blast Hits [TAIR_pep] AT5G55220.1 | Symbols: | trigger factor type chaperone family protein | chr5:22397677-22400678 FORWARD
SynWH7803_1672 Blast Hits [TAIR_pep] AT4G09160.1 | Symbols: | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr4:5839761-5842158 FORWARD
SynWH7803_1704 Blast Hits [TAIR_pep] AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F1; DNA binding / protein binding / transcription factor | chr5:7360749-7364120 FORWARD
SynWH7803_1722 Blast Hits [TAIR_pep] AT1G25250.1 | Symbols: AtIDD16 | AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16); nucleic acid binding / transcription factor/ zinc ion binding | chr1:8849549-8851520 FORWARD
SynWH7803_1793 Blast Hits [TAIR_pep] AT1G67710.1 | Symbols: ARR11 | ARR11 (RESPONSE REGULATOR 11); transcription factor/ two-component response regulator | chr1:25376994-25378905 REVERSE
SynWH7803_1797 Blast Hits [TAIR_pep] AT1G25550.1 | Symbols: | myb family transcription factor | chr1:8976644-8977942 FORWARD
SynWH7803_1854 Blast Hits [TAIR_pep] AT1G67710.1 | Symbols: ARR11 | ARR11 (RESPONSE REGULATOR 11); transcription factor/ two-component response regulator | chr1:25376994-25378905 REVERSE
SynWH7803_1859 Blast Hits [TAIR_pep] AT2G18280.2 | Symbols: AtTLP2 | AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor | chr2:7946754-7948176 FORWARD
SynWH7803_1886 Blast Hits [TAIR_pep] AT4G31920.1 | Symbols: ARR10 | ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10); transcription factor/ two-component response regulator | chr4:15444290-15446766 REVERSE
SynWH7803_1892 Blast Hits [TAIR_pep] AT4G21750.2 | Symbols: ATML1 | ATML1 (MERISTEM LAYER 1); DNA binding / sequence-specific DNA binding / transcription factor | chr4:11556965-11560243 FORWARD
SynWH7803_1929 Blast Hits [TAIR_pep] AT2G24570.1 | Symbols: WRKY17, ATWRKY17 | WRKY17; calmodulin binding / transcription factor | chr2:10437676-10439222 REVERSE
SynWH7803_1938 Blast Hits [TAIR_pep] AT5G04240.1 | Symbols: ELF6 | ELF6 (EARLY FLOWERING 6); transcription factor | chr5:1169544-1174638 FORWARD
SynWH7803_1975 Blast Hits [TAIR_pep] AT3G16130.1 | Symbols: ATROPGEF13, ROPGEF13 | ROPGEF13; Rho guanyl-nucleotide exchange factor | chr3:5466246-5468512 FORWARD
SynWH7803_1982 Blast Hits [TAIR_pep] AT1G35560.1 | Symbols: | TCP family transcription factor, putative | chr1:13116099-13117124 REVERSE
SynWH7803_2010 Blast Hits [TAIR_pep] AT5G17490.1 | Symbols: RGL3 | RGL3 (RGA-LIKE PROTEIN 3); transcription factor | chr5:5764316-5765887 REVERSE
SynWH7803_2069 Blast Hits [TAIR_pep] AT1G62750.1 | Symbols: ATSCO1, ATSCO1/CPEF-G, SCO1 | SCO1 (SNOWY COTYLEDON 1); ATP binding / translation elongation factor/ translation factor, nucleic acid binding | chr1:23233622-23236321 REVERSE
SynWH7803_2129 Blast Hits [TAIR_pep] AT5G36120.1 | Symbols: CCB3 | CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) | chr5:14198679-14199203 REVERSE
SynWH7803_2196 Blast Hits [TAIR_pep] AT4G36650.1 | Symbols: ATPBRP | ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN); RNA polymerase II transcription factor/ rDNA binding | chr4:17283283-17285527 REVERSE
SynWH7803_2248 Blast Hits [TAIR_pep] AT2G01760.1 | Symbols: ARR14 | ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14); transcription factor/ two-component response regulator | chr2:333041-334514 FORWARD
SynWH7803_2305 Blast Hits [TAIR_pep] AT1G72730.1 | Symbols: | eukaryotic translation initiation factor 4A, putative / eIF-4A, putative | chr1:27378040-27379593 REVERSE
SynWH7803_2314 Blast Hits [TAIR_pep] ATCG01110.1 | Symbols: NDHH | Encodes the 49KDa plastid NAD(P)H dehydrogenase subunit H protein. Its transcription is regulated by an ndhF-specific plastid sigma factor, SIG4. | chrC:122011-123192 REVERSE
SynWH7803_2334 Blast Hits [TAIR_pep] AT1G02440.1 | Symbols: ATARFD1A | ATARFD1A (ADP-ribosylation factor D1A); GTP binding | chr1:496586-497479 REVERSE
SynWH7803_2391 Blast Hits [TAIR_pep] AT3G13445.1 | Symbols: TBP1, TFIID-1 | TBP1 (TATA BINDING PROTEIN 1); DNA binding / RNA polymerase II transcription factor/ binding | chr3:4380317-4381869 FORWARD
SynWH7803_2402 Blast Hits [TAIR_pep] AT2G34710.1 | Symbols: PHB, ATHB14, ATHB-14, PHB-1D | PHB (PHABULOSA); DNA binding / transcription factor | chr2:14639548-14643993 REVERSE
SynWH7803_2428 Blast Hits [TAIR_pep] AT5G22010.1 | Symbols: AtRFC1 | AtRFC1 (replication factor C 1); ATP binding / DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding | chr5:7280632-7287037 REVERSE
SynWH7803_2460 Blast Hits [TAIR_pep] AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS); transcription factor | chr1:6887353-6891182 FORWARD
SynWH7803_0357 Blast Hits [nr] gb|AAH39635.1| eukaryotic translation elongation factor 1 beta 2 [Mus musculus]
SynWH7803_1199 Blast Hits [nr] ref|ZP_01124129.1| putative transcripton factor [Synechococcus sp. WH 7805] gi|88787607|gb|EAR18764.1| putative transcripton factor [Synechococcus sp. WH 7805]

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Gene set by search TXT
ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
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