in ?
cyanobase » Synechococcus sp. WH 7803 » genes » search

Full-text search result: 165 genes by "133" TXT SET

Synechococcus sp. WH 7803 (165 genes ) TXT SET

SynWH7803_0026 InterPro IPR004401 Uncharacterised protein family UPF0133; HMMPIR:PIRSF004555 UCP004555
InterPro IPR004401 Uncharacterised protein family UPF0133; HMMPfam:PF02575 DUF149
InterPro IPR004401 Uncharacterised protein family UPF0133; HMMTigr:TIGR00103 CHP103
InterPro IPR004401 Uncharacterised protein family UPF0133; superfamily:SSF82607 CHP00103
Blast Hits [sprot] Y024_PROM3 (sp|A2C5M1) UPF0133 protein P9303_00241 OS=Prochlorococcus marinus (strain MIT 9303) GN=P9303_00241 PE=3 SV=1
SynWH7803_0133 Gene product Possible sulfotransferase
Function Cell wall/membrane biogenesis: Cell wall/membrane biogenesis
GO term Molecular Function: sulfotransferase activity (GO:0008146)
InterPro IPR000863 Sulfotransferase domain; HMMPfam:PF00685 Sulfotransfer_1
InterPro IPR007739 Rhamnan synthesis F; HMMPfam:PF05045 RgpF
InterPro NULL NULL; Gene3D:G3DSA:3.40.50.300 G3DSA:3.40.50.300
InterPro NULL NULL; HMMPanther:PTHR10605 PTHR10605
InterPro NULL NULL; superfamily:SSF52540 SSF52540
Blast Hits [TAIR_pep] AT5G43860.1 | Symbols: ATCLH2, CLH2 | ATCLH2; chlorophyllase | chr5:17630492-17632184 FORWARD
Blast Hits [nr] ref|YP_376146.1| hypothetical protein Syncc9902_0128 [Synechococcus sp. CC9902] gi|78168006|gb|ABB25103.1| hypothetical protein Syncc9902_0128 [Synechococcus sp. CC9902]
Blast Hits [pln_est] gb|FC514441|FC514441 CBFS4930.fwd CBFS Thalassiosira pseudonana silicate limited cells (-Si) Thalassiosira pseudonana cDNA clone CBFS4930 5', mRNA sequence.
Blast Hits [sprot] HS3S6_MOUSE (sp|Q5GFD5) Heparan sulfate glucosamine 3-O-sulfotransferase 6 OS=Mus musculus GN=Hs3st6 PE=2 SV=1
SynWH7803_0153 InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
SynWH7803_0177 InterPro IPR004365 Nucleic acid binding, OB-fold, tRNA/helicase-type; HMMPfam:PF01336 tRNA_anti
SynWH7803_0248 InterPro IPR006241 Photosystem II protein cytochrome b559, beta subunit; HMMTigr:TIGR01333 cyt_b559_beta
SynWH7803_0249 InterPro IPR006217 Photosystem II protein cytochrome b559, alpha subunit; HMMTigr:TIGR01332 cyt_b559_alpha
SynWH7803_0269 InterPro NULL NULL; HMMPanther:PTHR23133 PTHR23133
InterPro NULL NULL; HMMPanther:PTHR23133:SF2 Imidazole-GPD
SynWH7803_0311 InterPro IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel; superfamily:SSF88713 Glyco_hydro/deAcase_b/a-brl
SynWH7803_0323 InterPro IPR003669 Thymidylate synthase ThyX; ProfileScan:PS51331 THYX
SynWH7803_0335 InterPro IPR002300 Aminoacyl-tRNA synthetase, class Ia; HMMPfam:PF00133 tRNA-synt_1
SynWH7803_0391 InterPro IPR006243 Photosystem I psaA; HMMTigr:TIGR01335 psaA
SynWH7803_0392 InterPro IPR006244 Photosystem I psaB; HMMTigr:TIGR01336 psaB
SynWH7803_0382 InterPro IPR006032 Ribosomal protein S12/S23; HMMPIR:PIRSF002133 Ribosomal protein, S12p/S12a/S23e/organellar S12 types
SynWH7803_0479 InterPro IPR006246 Phycocyanin, alpha subunit; HMMTigr:TIGR01338 phycocy_alpha
SynWH7803_0480 InterPro IPR006247 Phycocyanin, beta subunit; HMMTigr:TIGR01339 phycocy_beta
SynWH7803_0489 InterPro IPR021133 HEAT, type 2; ProfileScan:PS50077 HEAT_REPEAT
SynWH7803_0513 InterPro IPR002133 S-adenosylmethionine synthetase; HMMPIR:PIRSF000497 MAT
InterPro IPR002133 S-adenosylmethionine synthetase; HMMPanther:PTHR11964 S-AdoMet_synt
InterPro IPR002133 S-adenosylmethionine synthetase; HMMPfam:PF00438 S-AdoMet_synt_N
InterPro IPR002133 S-adenosylmethionine synthetase; HMMPfam:PF02772 S-AdoMet_synt_M
InterPro IPR002133 S-adenosylmethionine synthetase; HMMPfam:PF02773 S-AdoMet_synt_C
InterPro IPR002133 S-adenosylmethionine synthetase; HMMTigr:TIGR01034 metK
InterPro IPR002133 S-adenosylmethionine synthetase; PatternScan:PS00376 ADOMET_SYNTHETASE_1
InterPro IPR002133 S-adenosylmethionine synthetase; PatternScan:PS00377 ADOMET_SYNTHETASE_2
InterPro IPR002133 S-adenosylmethionine synthetase; superfamily:SSF55973 S-AdoMet_synt
SynWH7803_0584 InterPro IPR003699 Queuosine biosynthesis protein; superfamily:SSF111337 Queuosine_synth
SynWH7803_0611 InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
SynWH7803_0690 InterPro IPR021483 Protein of unknown function DUF3136; HMMPfam:PF11334 DUF3136
SynWH7803_0702 InterPro IPR013317 Chromosomal replication control, initiator (DnaA)/regulator (Hda); HMMPfam:PF00308 Bac_DnaA
SynWH7803_0736 InterPro IPR021483 Protein of unknown function DUF3136; HMMPfam:PF11334 DUF3136
SynWH7803_0742 InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
SynWH7803_0678 InterPro IPR020888 Ribulose bisphosphate carboxylase, large subunit; HAMAP:MF_01338 RBL_MF_01338
SynWH7803_0841 InterPro IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel; superfamily:SSF88713 Glyco_hydro/deAcase_b/a-brl
SynWH7803_0968 InterPro IPR005133 Na+/H+ antiporter subunit; HMMPfam:PF03334 PhaG_MnhG_YufB
SynWH7803_0972 InterPro IPR001133 NADH:ubiquinone/quinone oxidoreductase, chain 4L; HMMPfam:PF00420 Oxidored_q2
SynWH7803_1067 InterPro IPR004365 Nucleic acid binding, OB-fold, tRNA/helicase-type; HMMPfam:PF01336 tRNA_anti
SynWH7803_1070 InterPro IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial; HMMPfam:PF01330 RuvA_N
SynWH7803_1133 Gene product Uracil phosphoribosyltransferase
Gene symbol upp
Function Nucleotide transport and metabolism: Nucleotide transport and metabolism
InterPro NULL NULL; Gene3D:G3DSA:3.40.50.2020 G3DSA:3.40.50.2020
InterPro NULL NULL; HMMPanther:PTHR10285 PTHR10285
InterPro NULL NULL; HMMPanther:PTHR10285:SF1 PTHR10285:SF1
InterPro NULL NULL; superfamily:SSF53271 SSF53271
Blast Hits [TAIR_pep] AT3G53900.2 | Symbols: | uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative | chr3:19956914-19959006 REVERSE
Blast Hits [nr] ref|ZP_01124194.1| putative uracil phosphoribosyltransferase [Synechococcus sp. WH 7805] gi|88787672|gb|EAR18829.1| putative uracil phosphoribosyltransferase [Synechococcus sp. WH 7805]
Blast Hits [pln_est] gb|FG882255|FG882255 UCRVU07_CCNP14661_b1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP14661.b1, mRNA sequence.
Blast Hits [sprot] UPP_SYNP6 (sp|Q5MZF4) Uracil phosphoribosyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=upp PE=3 SV=1
SynWH7803_1260 InterPro IPR002300 Aminoacyl-tRNA synthetase, class Ia; HMMPfam:PF00133 tRNA-synt_1
Blast Hits [TAIR_pep] AT4G04350.1 | Symbols: EMB2369 | EMB2369 (EMBRYO DEFECTIVE 2369); ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding | chr4:2128129-2133030 FORWARD
SynWH7803_1277 InterPro IPR003759 Methionine synthase, cobalamin (vitamin B12)-binding module, cap; ProfileScan:PS51337 B12_BINDING_NTER
InterPro IPR006158 Cobalamin (vitamin B12)-binding; ProfileScan:PS51332 B12_BINDING
SynWH7803_1284 InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
SynWH7803_1330 Gene product Glycosyltransferase of family GT2
Function Cell wall/membrane biogenesis: Cell wall/membrane biogenesis
InterPro IPR001173 Glycosyl transferase, family 2; HMMPfam:PF00535 Glycos_transf_2
InterPro NULL NULL; Gene3D:G3DSA:3.90.550.10 G3DSA:3.90.550.10
InterPro NULL NULL; HMMPanther:PTHR22916 PTHR22916
InterPro NULL NULL; superfamily:SSF53448 SSF53448
Blast Hits [TAIR_pep] AT1G20575.1 | Symbols: | dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative | chr1:7126987-7128677 REVERSE
Blast Hits [nr] ref|ZP_01124006.1| possible glycosyltransferase [Synechococcus sp. WH 7805] gi|88787484|gb|EAR18641.1| possible glycosyltransferase [Synechococcus sp. WH 7805]
Blast Hits [pln_est] gb|FC343565|FC343565 CAYY2209.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY2209 5', mRNA sequence.
Blast Hits [sprot] YFNE_BACSU (sp|O06483) Uncharacterized glycosyltransferase yfnE OS=Bacillus subtilis GN=yfnE PE=3 SV=2
SynWH7803_1332 Gene product DevA-like ABC transporter ATPase component
Gene symbol devA
Function Defense mechanisms: Defense mechanisms
GO term Molecular Function: ATP binding (GO:0005524)
GO term Molecular Function: ATPase activity (GO:0016887)
GO term Molecular Function: nucleoside-triphosphatase activity (GO:0017111)
GO term Molecular Function: nucleotide binding (GO:0000166)
InterPro IPR003439 ABC transporter-like; HMMPfam:PF00005 ABC_tran
InterPro IPR003439 ABC transporter-like; ProfileScan:PS50893 ABC_TRANSPORTER_2
InterPro IPR003593 ATPase, AAA+ type, core; HMMSmart:SM00382 AAA
InterPro IPR014324 ABC transporter ATP-binding subunit, DevA type; HMMPanther:PTHR19222:SF35 ABC_heterocyst_DevA
InterPro IPR014324 ABC transporter ATP-binding subunit, DevA type; HMMTigr:TIGR02982 heterocyst_DevA
InterPro IPR017871 ABC transporter, conserved site; PatternScan:PS00211 ABC_TRANSPORTER_1
InterPro NULL NULL; Gene3D:G3DSA:3.40.50.300 G3DSA:3.40.50.300
InterPro NULL NULL; HMMPanther:PTHR19222 PTHR19222
InterPro NULL NULL; superfamily:SSF52540 SSF52540
Blast Hits [TAIR_pep] AT4G28620.1 | Symbols: ATATM2, ATM2 | ATM2 (ABC TRANSPORTER OF THE MITOCHONDRION 2); ATPase, coupled to transmembrane movement of substances / transporter | chr4:14135526-14137953 REVERSE
Blast Hits [nr] ref|ZP_01124004.1| ABC transporter, ATP-binding component [Synechococcus sp. WH 7805] gi|88787482|gb|EAR18639.1| ABC transporter, ATP-binding component [Synechococcus sp. WH 7805]
Blast Hits [pln_est] gb|FG604836|FG604836 PF_T3_70R_G03_03SEP2003_019 Opium poppy root cDNA library Papaver somniferum cDNA, mRNA sequence.
Blast Hits [sprot] Y1508_METJA (sp|Q58903) Uncharacterized ABC transporter ATP-binding protein MJ1508 OS=Methanocaldococcus jannaschii GN=MJ1508 PE=3 SV=1
SynWH7803_1333 Gene product DevC-like ABC transporter permease component
Gene symbol devC
Function Defense mechanisms: Defense mechanisms
GO term Cellular Component: membrane (GO:0016020)
InterPro IPR003838 Protein of unknown function DUF214, permase predicted; HMMPfam:PF02687 FtsX
InterPro IPR005891 DevC protein; HMMPIR:PIRSF031773 DevC
InterPro IPR005891 DevC protein; HMMTigr:TIGR01185 devC
Blast Hits [TAIR_pep] AT1G63880.1 | Symbols: | disease resistance protein (TIR-NBS-LRR class), putative | chr1:23712514-23716047 REVERSE
Blast Hits [nr] ref|ZP_01124003.1| DevC protein [Synechococcus sp. WH 7805] gi|88787481|gb|EAR18638.1| DevC protein [Synechococcus sp. WH 7805]
Blast Hits [sprot] HRTB_STAS1 (sp|Q49ZT7) Putative hemin transport system permease protein hrtB OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=hrtB PE=3 SV=1
SynWH7803_1334 Gene product DevB-like secretion protein
Gene symbol devB
Function Cell wall/membrane biogenesis: Cell wall/membrane biogenesis
InterPro IPR014315 ABC transporter membrane fusion protein, DevB type; HMMTigr:TIGR02971 heterocyst_DevB
InterPro NULL NULL; Gene3D:G3DSA:2.40.50.100 G3DSA:2.40.50.100
Blast Hits [TAIR_pep] AT3G20250.1 | Symbols: APUM5 | APUM5 (Arabidopsis Pumilio 5); RNA binding / binding | chr3:7059098-7062660 REVERSE
Blast Hits [nr] ref|ZP_01124002.1| possible ABC transporter component [Synechococcus sp. WH 7805] gi|88787480|gb|EAR18637.1| possible ABC transporter component [Synechococcus sp. WH 7805]
Blast Hits [pln_est] gb|FP029811|FP029811 FP029811 LG0AAA Quercus robur cDNA clone LG0AAA15YK04RM1 similar to CZCB_RALME Cobalt-zinc-cadmium resistance protein czcB . - Ralstonia metallidurans, mRNA sequence.
Blast Hits [sprot] AAEA_SERP5 (sp|A8GK45) p-hydroxybenzoic acid efflux pump subunit AaeA OS=Serratia proteamaculans (strain 568) GN=aaeA PE=3 SV=1
SynWH7803_1335 Gene product phycocyanobilin:ferredoxin oxidoreductase
Gene symbol pcyA
Function Not in COGs: Not in COGs
GO term Biological Process: oxidation reduction (GO:0055114)
GO term Biological Process: phytochromobilin biosynthetic process (GO:0010024)
GO term Molecular Function: cobalt ion binding (GO:0050897)
GO term Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor (GO:0016636)
InterPro IPR009249 Ferredoxin-dependent bilin reductase; HMMPfam:PF05996 Fe_bilin_red
Blast Hits [TAIR_pep] AT3G48110.1 | Symbols: EDD1, EDD | EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1); glycine-tRNA ligase | chr3:17763111-17770964 FORWARD
Blast Hits [nr] ref|ZP_01124001.1| phycocyanobilin:ferredoxin oxidoreductase [Synechococcus sp. WH 7805] gi|88787479|gb|EAR18636.1| phycocyanobilin:ferredoxin oxidoreductase [Synechococcus sp. WH 7805]
Blast Hits [pln_est] gb|BI716643|BI716643 1031011F04.y1 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas reinhardtii cDNA, mRNA sequence.
Blast Hits [sprot] PCYA_PROM3 (sp|A2CA92) Phycocyanobilin:ferredoxin oxidoreductase OS=Prochlorococcus marinus (strain MIT 9303) GN=pcyA PE=3 SV=1
SynWH7803_1336 Gene product Zn-dependent peptidase
Function General function prediction only: General function prediction only
GO term Biological Process: proteolysis (GO:0006508)
GO term Molecular Function: catalytic activity (GO:0003824)
GO term Molecular Function: metal ion binding (GO:0046872)
GO term Molecular Function: metalloendopeptidase activity (GO:0004222)
GO term Molecular Function: zinc ion binding (GO:0008270)
InterPro IPR001431 Peptidase M16, zinc-binding site; PatternScan:PS00143 INSULINASE
InterPro IPR007863 Peptidase M16, C-terminal; HMMPfam:PF05193 Peptidase_M16_C
InterPro IPR011237 Peptidase M16, core; Gene3D:G3DSA:3.30.830.10 Pept_M16_core
InterPro IPR011249 Metalloenzyme, LuxS/M16 peptidase-like, metal-binding; superfamily:SSF63411 Metalloenz_metal-bd
InterPro IPR011765 Peptidase M16, N-terminal; HMMPfam:PF00675 Peptidase_M16
InterPro NULL NULL; HMMPanther:PTHR11851 PTHR11851
Blast Hits [TAIR_pep] AT3G02090.2 | Symbols: MPPBETA | mitochondrial processing peptidase beta subunit, putative | chr3:365624-368534 FORWARD
Blast Hits [nr] ref|ZP_01124000.1| Possible Zn-dependent peptidase [Synechococcus sp. WH 7805] gi|88787478|gb|EAR18635.1| Possible Zn-dependent peptidase [Synechococcus sp. WH 7805]
Blast Hits [pln_est] gb|FC080974|FC080974 CACW12225.fwd CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cDNA clone CACW12225 5', mRNA sequence.
Blast Hits [sprot] Y522_RICBR (sp|Q1RJ61) Uncharacterized zinc protease RBE_0522 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0522 PE=3 SV=1
SynWH7803_1337 Gene product Predicted Zn-dependent peptidase
Function General function prediction only: General function prediction only
GO term Biological Process: proteolysis (GO:0006508)
GO term Molecular Function: catalytic activity (GO:0003824)
GO term Molecular Function: metal ion binding (GO:0046872)
GO term Molecular Function: metalloendopeptidase activity (GO:0004222)
GO term Molecular Function: zinc ion binding (GO:0008270)
InterPro IPR007863 Peptidase M16, C-terminal; HMMPfam:PF05193 Peptidase_M16_C
InterPro IPR011237 Peptidase M16, core; Gene3D:G3DSA:3.30.830.10 Pept_M16_core
InterPro IPR011249 Metalloenzyme, LuxS/M16 peptidase-like, metal-binding; superfamily:SSF63411 Metalloenz_metal-bd
InterPro IPR011765 Peptidase M16, N-terminal; HMMPfam:PF00675 Peptidase_M16
InterPro NULL NULL; HMMPanther:PTHR11851 PTHR11851
InterPro NULL NULL; HMMPanther:PTHR11851:SF61 PTHR11851:SF61
Blast Hits [TAIR_pep] AT3G02090.1 | Symbols: MPPBETA | mitochondrial processing peptidase beta subunit, putative | chr3:365624-368526 FORWARD
Blast Hits [nr] ref|ZP_01123999.1| Insulinase family (Peptidase family M16) [Synechococcus sp. WH 7805] gi|88787477|gb|EAR18634.1| Insulinase family (Peptidase family M16) [Synechococcus sp. WH 7805]
Blast Hits [pln_est] gb|GT622162|GT622162 LCUSE1NG_T3_040_A04_14JUN2007_032 LCUSE1NG Lens culinaris cDNA, mRNA sequence.
Blast Hits [sprot] Y522_RICBR (sp|Q1RJ61) Uncharacterized zinc protease RBE_0522 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0522 PE=3 SV=1
SynWH7803_1338 Gene product hypothetical protein
Function Not in COGs: Not in COGs
InterPro IPR021495 Protein of unknown function DUF3148; HMMPfam:PF11347 DUF3148
Blast Hits [TAIR_pep] AT5G20935.1 | Symbols: | unknown protein | chr5:7103487-7103945 FORWARD
Blast Hits [nr] ref|ZP_01123998.1| hypothetical protein WH7805_02322 [Synechococcus sp. WH 7805] gi|88787476|gb|EAR18633.1| hypothetical protein WH7805_02322 [Synechococcus sp. WH 7805]
Blast Hits [pln_est] dbj|DN261849|DN261849 Meso00854 Mesostigma vegetative library Mesostigma viride cDNA clone Meso2b16d10.r1, mRNA sequence.
Blast Hits [sprot] YBIO_ECOLI (sp|P75783) Uncharacterized mscS family protein ybiO OS=Escherichia coli (strain K12) GN=ybiO PE=3 SV=2
SynWH7803_1339 Gene product Uncharacterized BioY family conserved membrane protein
Function General function prediction only: General function prediction only
InterPro IPR003784 BioY protein; HMMPIR:PIRSF016661 BioY
InterPro IPR003784 BioY protein; HMMPfam:PF02632 BioY
Blast Hits [TAIR_pep] AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor | chr1:18416740-18419753 FORWARD
Blast Hits [nr] ref|YP_001017663.1| hypothetical protein P9303_16541 [Prochlorococcus marinus str. MIT 9303] gi|123963642|gb|ABM78398.1| Uncharacterized conserved protein [Prochlorococcus marinus str. MIT 9303]
Blast Hits [sprot] BIOY_BACSH (sp|P22819) Probable biotin transporter bioY OS=Bacillus sphaericus GN=bioY PE=3 SV=1
SynWH7803_1368 InterPro IPR011335 Restriction endonuclease, type II-like, core; superfamily:SSF52980 Restrict_endonuc_II-like_core
SynWH7803_1443 InterPro IPR021336 Protein of unknown function DUF2949; HMMPfam:PF11165 DUF2949
SynWH7803_1483 InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
SynWH7803_1484 InterPro IPR002794 Protein of unknown function DUF92, transmembrane; HMMPanther:PTHR13353 DUF92_TM
SynWH7803_1496 InterPro IPR013345 Ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent; HMMTigr:TIGR02505 RTPR
SynWH7803_1544 InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
SynWH7803_1587 InterPro IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel; superfamily:SSF88713 Glyco_hydro/deAcase_b/a-brl
SynWH7803_1617 InterPro NULL NULL; HMMPanther:PTHR10133 PTHR10133
SynWH7803_1710 InterPro IPR016064 ATP-NAD kinase, PpnK-type; superfamily:SSF111331 ATP-NAD_kinase_PpnK-typ
SynWH7803_1736 InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
SynWH7803_1754 InterPro IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal; HMMPfam:PF02746 MR_MLE_N
InterPro IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal; HMMPfam:PF01188 MR_MLE
SynWH7803_1803 InterPro IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase; FPrintScan:PR00998 CRBOXYPTASET
InterPro IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase; HMMPIR:PIRSF006615 Zn_crbxpep_Taq
InterPro IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase; HMMPfam:PF02074 Peptidase_M32
SynWH7803_1851 InterPro IPR002325 Cytochrome f; HMMPfam:PF01333 Apocytochr_F_C
SynWH7803_1997 InterPro IPR001185 Large-conductance mechanosensitive channel; superfamily:SSF81330 MS_channel
SynWH7803_2022 InterPro IPR000568 ATPase, F0 complex, subunit A; superfamily:SSF81336 ATPase_F0_A
SynWH7803_2027 InterPro IPR006245 Allophycocyanin, beta subunit; HMMTigr:TIGR01337 apcB
SynWH7803_2133 Gene product Conserved hypothetical protein similar to TolB C-terminal domain
Function Intracellular trafficking and secretion: Intracellular trafficking and secretion
InterPro NULL NULL; superfamily:SSF50960 TolB_C
Blast Hits [TAIR_pep] AT3G03730.1 | Symbols: | F-box family protein | chr3:935139-936320 REVERSE
Blast Hits [nr] ref|ZP_01122733.1| hypothetical protein WH7805_11758 [Synechococcus sp. WH 7805] gi|88788435|gb|EAR19590.1| hypothetical protein WH7805_11758 [Synechococcus sp. WH 7805]
Blast Hits [sprot] TOLB_RICCN (sp|Q92IL4) Protein tolB OS=Rickettsia conorii GN=tolB PE=3 SV=1
SynWH7803_2193 InterPro IPR004365 Nucleic acid binding, OB-fold, tRNA/helicase-type; HMMPfam:PF01336 tRNA_anti
SynWH7803_2021 InterPro IPR002379 ATPase, F0/V0 complex, subunit C; superfamily:SSF81333 F1F0 ATP synthase subunit C
SynWH7803_2440 InterPro IPR002300 Aminoacyl-tRNA synthetase, class Ia; HMMPfam:PF00133 tRNA-synt_1
SynWH7803_2453 InterPro IPR001045 Spermine synthase; PatternScan:PS01330 SPERMIDINE_SYNTHASE_1
SynWH7803_2458 InterPro IPR004365 Nucleic acid binding, OB-fold, tRNA/helicase-type; HMMPfam:PF01336 tRNA_anti
SynWH7803_2459 InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
SynWH7803_2501 InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
SynWH7803_2521 InterPro IPR021481 Protein of unknown function DUF3134; HMMPfam:PF11332 DUF3134
SynWH7803_2244 InterPro IPR018095 Thymidylate kinase, conserved site; PatternScan:PS01331 THYMIDYLATE_KINASE
SynWH7803_2287 InterPro IPR016064 ATP-NAD kinase, PpnK-type; superfamily:SSF111331 ATP-NAD_kinase_PpnK-typ
SynWH7803_2288 InterPro IPR001133 NADH:ubiquinone/quinone oxidoreductase, chain 4L; HMMPfam:PF00420 Oxidored_q2
SynWH7803_2317 InterPro IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal; HMMPfam:PF01188 MR_MLE
SynWH7803_2361 InterPro IPR006009 N-acetylglucosaminyltransferase, MurG; HMMTigr:TIGR01133 murG
SynWH7803_2385 InterPro IPR004413 Glutamyl-tRNA(Gln) amidotransferase, B subunit; HMMTigr:TIGR00133 gatB
SynWH7803_2389 InterPro IPR002985 Arginine decarboxylase; HMMPIR:PIRSF001336 Arg_decrbxlase
SynWH7803_1331 Gene product hypothetical protein
Function Not in COGs: Not in COGs
Blast Hits [TAIR_pep] AT1G50750.1 | Symbols: | unknown protein | chr1:18809184-18812050 REVERSE
Blast Hits [nr] ref|ZP_01124005.1| hypothetical protein WH7805_02357 [Synechococcus sp. WH 7805] gi|88787483|gb|EAR18640.1| hypothetical protein WH7805_02357 [Synechococcus sp. WH 7805]
Blast Hits [pln_est] emb|AV433140|AV433140 AV433140 Porphyra yezoensis TU-1 Porphyra yezoensis cDNA clone PM024g05_r 5', mRNA sequence.
Blast Hits [sprot] ACE1_TRIRE (sp|Q9P8W3) Zinc finger transcription factor ace1 OS=Trichoderma reesei GN=ace1 PE=4 SV=1
SynWH7803_0126 Blast Hits [nr] ref|YP_376133.1| TPR repeat-containing protein [Synechococcus sp. CC9902] gi|78167993|gb|ABB25090.1| TPR repeat [Synechococcus sp. CC9902]
SynWH7803_0131 Blast Hits [nr] ref|YP_476596.1| heptosyltransferase family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556376|gb|ABD01333.1| heptosyltransferase family protein [Synechococcus sp. JA-2-3B'a(2-13)]
SynWH7803_0140 Blast Hits [nr] ref|ZP_01123605.1| hypothetical protein WH7805_08026 [Synechococcus sp. WH 7805] gi|88788133|gb|EAR19289.1| hypothetical protein WH7805_08026 [Synechococcus sp. WH 7805]
SynWH7803_0801 Blast Hits [nr] ref|ZP_01125133.1| hypothetical protein WH7805_00440 [Synechococcus sp. WH 7805] gi|88786376|gb|EAR17536.1| hypothetical protein WH7805_00440 [Synechococcus sp. WH 7805]
SynWH7803_0883 Blast Hits [nr] ref|ZP_01080443.1| hypothetical protein RS9917_13310 [Synechococcus sp. RS9917] gi|86168166|gb|EAQ69424.1| hypothetical protein RS9917_13310 [Synechococcus sp. RS9917]
SynWH7803_0955 Blast Hits [nr] ref|NP_897432.1| hypothetical protein SYNW1339 [Synechococcus sp. WH 8102] gi|33633043|emb|CAE07854.1| hypothetical [Synechococcus sp. WH 8102]
SynWH7803_0957 Blast Hits [nr] ref|ZP_01123800.1| hypothetical protein WH7805_01332 [Synechococcus sp. WH 7805] gi|88787278|gb|EAR18435.1| hypothetical protein WH7805_01332 [Synechococcus sp. WH 7805]
SynWH7803_0958 Blast Hits [nr] ref|ZP_01123801.1| hypothetical protein WH7805_01337 [Synechococcus sp. WH 7805] gi|88787279|gb|EAR18436.1| hypothetical protein WH7805_01337 [Synechococcus sp. WH 7805]
SynWH7803_1011 Blast Hits [nr] ref|YP_001227389.1| hypothetical protein SynRCC307_1133 [Synechococcus sp. RCC307] gi|147850542|emb|CAK28036.1| Uncharacterized conserved membrane protein [Synechococcus sp. RCC307]
SynWH7803_1194 Blast Hits [nr] ref|ZP_01124133.1| DNA ligase [Synechococcus sp. WH 7805] gi|88787611|gb|EAR18768.1| DNA ligase [Synechococcus sp. WH 7805]
SynWH7803_1648 Blast Hits [nr] ref|ZP_01124542.1| Photosynthetic II protein PsbC [Synechococcus sp. WH 7805] gi|88786975|gb|EAR18133.1| Photosynthetic II protein PsbC [Synechococcus sp. WH 7805]
SynWH7803_1831 Blast Hits [nr] ref|ZP_01123133.1| short chain dehydrogenase [Synechococcus sp. WH 7805] gi|88788835|gb|EAR19990.1| short chain dehydrogenase [Synechococcus sp. WH 7805]
SynWH7803_1850 Blast Hits [nr] ref|ZP_05789412.1| cytochrome b6-F complex iron-sulfur subunit [Synechococcus sp. WH 8109] gi|260413316|gb|EEX06612.1| cytochrome b6-F complex iron-sulfur subunit [Synechococcus sp. WH 8109]
SynWH7803_1902 Blast Hits [nr] ref|ZP_01123060.1| hypothetical protein WH7805_13393 [Synechococcus sp. WH 7805] gi|88788762|gb|EAR19917.1| hypothetical protein WH7805_13393 [Synechococcus sp. WH 7805]
SynWH7803_1903 Blast Hits [nr] ref|ZP_01123059.1| hypothetical protein WH7805_13388 [Synechococcus sp. WH 7805] gi|88788761|gb|EAR19916.1| hypothetical protein WH7805_13388 [Synechococcus sp. WH 7805]
SynWH7803_1904 Blast Hits [nr] ref|ZP_01123058.1| hypothetical protein WH7805_13383 [Synechococcus sp. WH 7805] gi|88788760|gb|EAR19915.1| hypothetical protein WH7805_13383 [Synechococcus sp. WH 7805]
SynWH7803_1906 Blast Hits [nr] ref|ZP_01123056.1| hypothetical protein WH7805_13373 [Synechococcus sp. WH 7805] gi|88788758|gb|EAR19913.1| hypothetical protein WH7805_13373 [Synechococcus sp. WH 7805]
SynWH7803_1909 Blast Hits [nr] ref|ZP_01123053.1| hypothetical protein WH7805_13358 [Synechococcus sp. WH 7805] gi|88788755|gb|EAR19910.1| hypothetical protein WH7805_13358 [Synechococcus sp. WH 7805]
SynWH7803_1910 Blast Hits [nr] ref|ZP_01123052.1| hypothetical protein WH7805_13353 [Synechococcus sp. WH 7805] gi|88788754|gb|EAR19909.1| hypothetical protein WH7805_13353 [Synechococcus sp. WH 7805]
SynWH7803_1911 Blast Hits [nr] ref|ZP_01123051.1| hypothetical protein WH7805_13348 [Synechococcus sp. WH 7805] gi|88788753|gb|EAR19908.1| hypothetical protein WH7805_13348 [Synechococcus sp. WH 7805]
SynWH7803_1912 Blast Hits [nr] ref|ZP_01123050.1| hypothetical protein WH7805_13343 [Synechococcus sp. WH 7805] gi|88788752|gb|EAR19907.1| hypothetical protein WH7805_13343 [Synechococcus sp. WH 7805]
SynWH7803_1936 Blast Hits [nr] ref|YP_001227980.1| putative cyanophycin synthetase [Synechococcus sp. RCC307] gi|147851133|emb|CAK28627.1| Putative cyanophycin synthetase [Synechococcus sp. RCC307]
SynWH7803_2108 Blast Hits [nr] ref|XP_002287958.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977074|gb|EED95401.1| predicted protein [Thalassiosira pseudonana CCMP1335]
SynWH7803_0647 Blast Hits [sprot] GLGC_NOSP7 (sp|B2IUY3) Glucose-1-phosphate adenylyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=glgC PE=3 SV=1
SynWH7803_0879 Blast Hits [sprot] NIFK_METTM (sp|P95296) Nitrogenase molybdenum-iron protein beta chain OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=nifK PE=3 SV=1
SynWH7803_1239 Blast Hits [sprot] YCXI_PORPU (sp|P51336) Uncharacterized protein in rpl9-rpl11 intergenic region OS=Porphyra purpurea PE=3 SV=1
SynWH7803_1394 Blast Hits [sprot] SEPF_NOSP7 (sp|B2J1K8) Cell division protein sepF OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=sepF PE=3 SV=1
SynWH7803_1672 Blast Hits [sprot] GP133_BOVIN (sp|A6QLU6) Probable G-protein coupled receptor 133 OS=Bos taurus GN=GPR133 PE=2 SV=1
SynWH7803_1772 Blast Hits [sprot] UBIE_NOSP7 (sp|B2IUM7) Menaquinone biosynthesis methyltransferase ubiE OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ubiE PE=3 SV=1
SynWH7803_1809 Blast Hits [sprot] FBPB2_HAEIN (sp|P71338) Fe(3+)-transport system permease protein fbpB 2 OS=Haemophilus influenzae GN=fbpB2 PE=3 SV=2
SynWH7803_1953 Blast Hits [sprot] Y7813_DICDI (sp|Q54YP8) TNF receptor-associated factor family protein DDB_G0278133 OS=Dictyostelium discoideum GN=DDB_G0278133 PE=3 SV=1
SynWH7803_2035 Blast Hits [sprot] GLNB_NOSP7 (sp|O30794) Nitrogen regulatory protein P-II OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=glnB PE=3 SV=1
SynWH7803_2226 Blast Hits [sprot] Y095_TREPA (sp|O83133) TPR repeat-containing protein TP_0095 OS=Treponema pallidum GN=TP_0095 PE=4 SV=1
SynWH7803_0134 Blast Hits [pln_est] gb|FC513342|FC513342 CBFS4174.fwd CBFS Thalassiosira pseudonana silicate limited cells (-Si) Thalassiosira pseudonana cDNA clone CBFS4174 5', mRNA sequence.
SynWH7803_0703 Blast Hits [pln_est] dbj|EG721438|EG721438 GTE00013395 Guillardia theta non-normalised Guillardia theta cDNA, mRNA sequence.
SynWH7803_0793 Blast Hits [pln_est] gb|GE593472|GE593472 CCPW2133.b1_I06.ab1 CCP(UWX) Globe Artichoke Cynara scolymus cDNA clone CCPW2133, mRNA sequence.
SynWH7803_0854 Blast Hits [pln_est] gb|FE505386|FE505386 CAOU13378.fwd CAOU Selaginella moellendorffii mixed tissues; whole juvenile plants with roots and reproductive stems with developing strobili Selaginella moellendorffii cDNA clone CAOU13378 5', mRNA sequence.
SynWH7803_1403 Blast Hits [pln_est] gb|CN201308|CN201308 Tor1337 Gametophyte rehydration Library Syntrichia ruralis cDNA, mRNA sequence.
SynWH7803_1802 Blast Hits [pln_est] dbj|EV218593|EV218593 0133701 Brassica napus Root - drought Brassica napus cDNA, mRNA sequence.
SynWH7803_2393 Blast Hits [pln_est] gb|GO997173|GO997173 CCIG13388.g1 CCIG Mimulus guttatus DUN10 floral buds (H) Mimulus guttatus cDNA clone CCIG13388 3', mRNA sequence.
SynWH7803_0010 Blast Hits [TAIR_pep] AT4G26370.1 | Symbols: | antitermination NusB domain-containing protein | chr4:13334099-13336153 REVERSE
SynWH7803_0027 Blast Hits [TAIR_pep] AT3G27700.2 | Symbols: | RNA recognition motif (RRM)-containing protein | chr3:10257681-10261330 REVERSE
SynWH7803_0046 Blast Hits [TAIR_pep] AT2G13360.2 | Symbols: AGT, AGT1 | AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE); alanine-glyoxylate transaminase/ serine-glyoxylate transaminase/ serine-pyruvate transaminase | chr2:5539417-5540902 REVERSE
SynWH7803_0112 Blast Hits [TAIR_pep] AT4G04350.1 | Symbols: EMB2369 | EMB2369 (EMBRYO DEFECTIVE 2369); ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding | chr4:2128129-2133030 FORWARD
SynWH7803_0142 Blast Hits [TAIR_pep] AT1G55920.1 | Symbols: ATSERAT2;1, SAT5, SAT1 | ATSERAT2;1 (SERINE ACETYLTRANSFERASE 2;1); serine O-acetyltransferase | chr1:20912378-20913322 FORWARD
SynWH7803_0233 Blast Hits [TAIR_pep] AT1G53000.1 | Symbols: | cytidylyltransferase family | chr1:19745330-19747133 REVERSE
SynWH7803_0283 Blast Hits [TAIR_pep] AT1G55930.1 | Symbols: | CBS domain-containing protein / transporter associated domain-containing protein | chr1:20918895-20922133 FORWARD
SynWH7803_0350 Blast Hits [TAIR_pep] AT4G22850.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12000.1); Has 1331 Blast hits to 1328 proteins in 349 species: Archae - 4; Bacteria - 600; Metazoa - 103; Fungi - 64; Plants - 162; Viruses - 0; Other Eukaryotes - 398 (source: NCBI BLink). | chr4:11994194-11995941 FORWARD
SynWH7803_0393 Blast Hits [TAIR_pep] AT3G13300.2 | Symbols: VCS | VCS (VARICOSE); nucleotide binding / protein homodimerization | chr3:4304085-4309949 FORWARD
SynWH7803_0442 Blast Hits [TAIR_pep] AT2G17820.1 | Symbols: ATHK1, AHK1 | ATHK1 (histidine kinase 1); histidine phosphotransfer kinase/ osmosensor/ protein histidine kinase | chr2:7743133-7748013 REVERSE
SynWH7803_0458 Blast Hits [TAIR_pep] AT2G17820.1 | Symbols: ATHK1, AHK1 | ATHK1 (histidine kinase 1); histidine phosphotransfer kinase/ osmosensor/ protein histidine kinase | chr2:7743133-7748013 REVERSE
SynWH7803_0620 Blast Hits [TAIR_pep] AT3G57610.1 | Symbols: ADSS | ADSS (ADENYLOSUCCINATE SYNTHASE); adenylosuccinate synthase | chr3:21334519-21336603 REVERSE
SynWH7803_0629 Blast Hits [TAIR_pep] AT4G26430.1 | Symbols: CSN6B | CSN6B | chr4:13355229-13357326 FORWARD
SynWH7803_0635 Blast Hits [TAIR_pep] AT2G26650.1 | Symbols: AKT1, ATAKT1 | AKT1 (ARABIDOPSIS K TRANSPORTER 1); cyclic nucleotide binding / inward rectifier potassium channel | chr2:11331965-11336444 REVERSE
SynWH7803_0694 Blast Hits [TAIR_pep] AT2G31350.1 | Symbols: GLX2-5 | GLX2-5 (GLYOXALASE 2-5); hydroxyacylglutathione hydrolase/ iron ion binding / zinc ion binding | chr2:13368451-13370802 FORWARD
SynWH7803_0794 Blast Hits [TAIR_pep] AT2G31390.1 | Symbols: | pfkB-type carbohydrate kinase family protein | chr2:13383635-13386116 REVERSE
SynWH7803_0818 Blast Hits [TAIR_pep] AT1G18060.1 | Symbols: | unknown protein | chr1:6212065-6213314 REVERSE
SynWH7803_0845 Blast Hits [TAIR_pep] AT2G05120.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nup133, N-terminal (InterPro:IPR014908); Has 103 Blast hits to 103 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr2:1842069-1846858 REVERSE
SynWH7803_0952 Blast Hits [TAIR_pep] AT4G33540.1 | Symbols: | metallo-beta-lactamase family protein | chr4:16130882-16133678 FORWARD
SynWH7803_1103 Blast Hits [TAIR_pep] AT2G04039.1 | Symbols: | unknown protein | chr2:1333464-1334438 FORWARD
SynWH7803_1197 Blast Hits [TAIR_pep] AT5G01040.1 | Symbols: LAC8 | LAC8 (laccase 8); laccase | chr5:13394-16142 REVERSE
SynWH7803_1234 Blast Hits [TAIR_pep] AT3G61480.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1339 (InterPro:IPR009771), WD40/YVTN repeat-like (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28350.2); Has 245 Blast hits to 227 proteins in 108 species: Archae - 0; Bacteria - 13; Metazoa - 104; Fungi - 64; Plants - 29; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | chr3:22749984-22756476 FORWARD
SynWH7803_1345 Blast Hits [TAIR_pep] AT2G13360.2 | Symbols: AGT, AGT1 | AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE); alanine-glyoxylate transaminase/ serine-glyoxylate transaminase/ serine-pyruvate transaminase | chr2:5539417-5540902 REVERSE
SynWH7803_1392 Blast Hits [TAIR_pep] AT3G05545.1 | Symbols: | transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein | chr3:1609436-1612133 FORWARD
SynWH7803_1430 Blast Hits [TAIR_pep] AT3G61950.2 | Symbols: | basic helix-loop-helix (bHLH) family protein | chr3:22940231-22941332 FORWARD
SynWH7803_1450 Blast Hits [TAIR_pep] AT2G17820.1 | Symbols: ATHK1, AHK1 | ATHK1 (histidine kinase 1); histidine phosphotransfer kinase/ osmosensor/ protein histidine kinase | chr2:7743133-7748013 REVERSE
SynWH7803_1491 Blast Hits [TAIR_pep] AT3G51140.1 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CDF1 (CELL GROWTH DEFECT FACTOR 1) (TAIR:AT5G23040.1); Has 133 Blast hits to 133 proteins in 42 species: Archae - 0; Bacteria - 60; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr3:18998182-18999437 FORWARD
SynWH7803_1574 Blast Hits [TAIR_pep] AT4G26300.1 | Symbols: emb1027 | emb1027 (embryo defective 1027); ATP binding / aminoacyl-tRNA ligase/ arginine-tRNA ligase/ nucleotide binding | chr4:13308400-13313109 REVERSE
SynWH7803_1605 Blast Hits [TAIR_pep] AT4G26500.1 | Symbols: EMB1374, CPSUFE, ATSUFE, SUFE1 | CPSUFE (CHLOROPLAST SULFUR E); enzyme activator/ transcription regulator | chr4:13382456-13383571 REVERSE
SynWH7803_1628 Blast Hits [TAIR_pep] AT2G31250.1 | Symbols: HEMA3 | HEMA3; NADP or NADPH binding / binding / catalytic/ glutamyl-tRNA reductase/ shikimate 5-dehydrogenase | chr2:13319702-13321526 REVERSE
SynWH7803_1787 Blast Hits [TAIR_pep] AT3G48010.1 | Symbols: ATCNGC16, CNGC16 | ATCNGC16; calmodulin binding / cyclic nucleotide binding / ion channel | chr3:17721335-17724028 REVERSE
SynWH7803_1844 Blast Hits [TAIR_pep] AT1G31330.1 | Symbols: PSAF | PSAF (photosystem I subunit F) | chr1:11215011-11215939 REVERSE
SynWH7803_1924 Blast Hits [TAIR_pep] AT4G26480.1 | Symbols: | KH domain-containing protein | chr4:13372885-13378390 REVERSE
SynWH7803_2006 Blast Hits [TAIR_pep] AT1G55930.1 | Symbols: | CBS domain-containing protein / transporter associated domain-containing protein | chr1:20918895-20922133 FORWARD
SynWH7803_2057 Blast Hits [TAIR_pep] AT5G45380.1 | Symbols: ATDUR3, DUR3 | sodium:solute symporter family protein | chr5:18391337-18395696 FORWARD
SynWH7803_2066 Blast Hits [TAIR_pep] AT3G04790.1 | Symbols: | ribose 5-phosphate isomerase-related | chr3:1313365-1314195 FORWARD
SynWH7803_2176 Blast Hits [TAIR_pep] AT5G57960.1 | Symbols: | GTP-binding family protein | chr5:23463133-23466481 REVERSE
SynWH7803_2204 Blast Hits [TAIR_pep] AT5G14760.1 | Symbols: AO | AO (L-ASPARTATE OXIDASE); L-aspartate oxidase/ electron carrier/ oxidoreductase | chr5:4769133-4772012 FORWARD
SynWH7803_2237 Blast Hits [TAIR_pep] AT3G55320.1 | Symbols: PGP20 | PGP20 (P-GLYCOPROTEIN 20); ATPase, coupled to transmembrane movement of substances | chr3:20507391-20513393 REVERSE
SynWH7803_2275 Blast Hits [TAIR_pep] AT3G55320.1 | Symbols: PGP20 | PGP20 (P-GLYCOPROTEIN 20); ATPase, coupled to transmembrane movement of substances | chr3:20507391-20513393 REVERSE
SynWH7803_2324 Blast Hits [TAIR_pep] AT5G24060.1 | Symbols: | unknown protein | chr5:8130273-8133269 REVERSE
SynWH7803_2333 Blast Hits [TAIR_pep] AT5G13030.1 | Symbols: | unknown protein | chr5:4133216-4136461 FORWARD
SynWH7803_2336 Blast Hits [TAIR_pep] AT4G26300.1 | Symbols: emb1027 | emb1027 (embryo defective 1027); ATP binding / aminoacyl-tRNA ligase/ arginine-tRNA ligase/ nucleotide binding | chr4:13308400-13313109 REVERSE
SynWH7803_2381 Blast Hits [TAIR_pep] AT5G07140.1 | Symbols: | protein kinase family protein | chr5:2212877-2215133 FORWARD
SynWH7803_2430 Blast Hits [TAIR_pep] AT3G01331.1 | Symbols: | Encodes a ECA1 gametogenesis related family protein | chr3:119618-119917 REVERSE
SynWH7803_2474 Blast Hits [TAIR_pep] AT3G55830.1 | Symbols: EPC1 | EPC1 (ECTOPICALLY PARTING CELLS); UDP-glucosyltransferase/ transferase, transferring glycosyl groups | chr3:20715101-20717133 FORWARD
SynWH7803_2485 Blast Hits [TAIR_pep] AT5G20990.1 | Symbols: B73, SIR4, CNX, CHL6, CNX1 | B73; molybdenum ion binding | chr5:7128737-7133397 REVERSE
SynWH7803_2486 Blast Hits [TAIR_pep] AT2G43760.3 | Symbols: | molybdopterin biosynthesis MoaE family protein | chr2:18133276-18133872 FORWARD
SynWH7803_2488 Blast Hits [TAIR_pep] AT5G20990.1 | Symbols: B73, SIR4, CNX, CHL6, CNX1 | B73; molybdenum ion binding | chr5:7128737-7133397 REVERSE
SynWH7803_2510 Blast Hits [TAIR_pep] AT1G31170.2 | Symbols: ATSRX, SRX | SRX (SULFIREDOXIN); DNA binding / oxidoreductase, acting on sulfur group of donors | chr1:11133521-11134228 FORWARD

Word clouds

API

? | +/- | Top
Gene set by search TXT
ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
Table of contents (165)
1.737883746

MicrobeBase