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Full-text search result: 38 genes by "alani" TXT SET

Synechococcus sp. WH 7803 (38 genes ) TXT SET

SynWH7803_0028 Gene product UDP-N-acetylmuramate-alanine ligase
GO term Molecular Function: UDP-N-acetylmuramate-L-alanine ligase activity (GO:0008763)
InterPro IPR005758 UDP-N-acetylmuramate-alanine ligase; HMMTigr:TIGR01082 murC
Blast Hits [nr] ref|ZP_01124845.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 7805] gi|88786556|gb|EAR17715.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 7805]
Blast Hits [sprot] MURC_SYNS3 (sp|Q0IE55) UDP-N-acetylmuramate--L-alanine ligase OS=Synechococcus sp. (strain CC9311) GN=murC PE=3 SV=1
SynWH7803_0099 GO term Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745)
InterPro IPR002502 N-acetylmuramoyl-L-alanine amidase, family 2; HMMPfam:PF01510 Amidase_2
InterPro IPR002502 N-acetylmuramoyl-L-alanine amidase, family 2; superfamily:SSF55846 Amidase_2
SynWH7803_0275 InterPro IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase; FPrintScan:PR00082 GLFDHDRGNASE
InterPro IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; HMMPfam:PF00208 ELFV_dehydrog
InterPro IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; HMMSmart:SM00839 ELFV_dehydrog
InterPro IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; HMMPfam:PF02812 ELFV_dehydrog_N
Blast Hits [sprot] DHPH_BACSH (sp|P23307) Phenylalanine dehydrogenase OS=Bacillus sphaericus GN=pdh PE=3 SV=1
SynWH7803_0403 Gene product alanine racemase
GO term Biological Process: alanine metabolic process (GO:0006522)
GO term Molecular Function: alanine racemase activity (GO:0008784)
InterPro IPR000821 Alanine racemase; FPrintScan:PR00992 ALARACEMASE
InterPro IPR000821 Alanine racemase; HMMTigr:TIGR00492 alr
InterPro IPR001608 Alanine racemase, N-terminal; HMMPfam:PF01168 Ala_racemase_N
InterPro IPR009006 Alanine racemase/group IV decarboxylase, C-terminal; superfamily:SSF50621 Racem_decarbox_C
InterPro IPR011079 Alanine racemase, C-terminal; HMMPfam:PF00842 Ala_racemase_C
InterPro IPR020622 Alanine racemase, pyridoxal-phosphate attachment site; PatternScan:PS00395 ALANINE_RACEMASE
Blast Hits [nr] ref|ZP_01123427.1| alanine racemase [Synechococcus sp. WH 7805] gi|88787955|gb|EAR19111.1| alanine racemase [Synechococcus sp. WH 7805]
Blast Hits [sprot] ALR_PROMA (sp|Q7V9Z2) Alanine racemase OS=Prochlorococcus marinus GN=alr PE=3 SV=1
SynWH7803_0474 Gene product Bifunctional enzyme (pantoate-beta-alanine ligase / cytidylate kinase), cyanobacteria-specific
GO term Molecular Function: pantoate-beta-alanine ligase activity (GO:0004592)
InterPro IPR003721 Pantoate-beta-alanine ligase; HMMPanther:PTHR21299:SF1 Pantoate_ligase
InterPro IPR003721 Pantoate-beta-alanine ligase; HMMPfam:PF02569 Pantoate_ligase
InterPro IPR003721 Pantoate-beta-alanine ligase; HMMTigr:TIGR00018 panC
Blast Hits [TAIR_pep] AT5G48840.1 | Symbols: PANC, PTS, ATPTS | PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC); pantoate-beta-alanine ligase/ protein homodimerization | chr5:19803823-19805041 REVERSE
Blast Hits [nr] ref|ZP_01123354.1| pantoate-beta-alanine ligase [Synechococcus sp. WH 7805] gi|88787882|gb|EAR19038.1| pantoate-beta-alanine ligase [Synechococcus sp. WH 7805]
SynWH7803_0571 InterPro IPR001608 Alanine racemase, N-terminal; HMMPfam:PF01168 Ala_racemase_N
Blast Hits [TAIR_pep] AT1G11930.2 | Symbols: | alanine racemase family protein | chr1:4028783-4030298 FORWARD
SynWH7803_1028 Gene product UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alani ne ligase
GO term Molecular Function: UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766)
InterPro IPR005863 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; HMMPanther:PTHR23135:SF3 MurF
InterPro IPR005863 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; HMMTigr:TIGR01143 murF
Blast Hits [sprot] MURF_SYNY3 (sp|P45450) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase OS=Synechocystis sp. (strain PCC 6803) GN=murF PE=3 SV=1
SynWH7803_1257 Gene product N-acetylmuramoyl-L-alanine amidase
GO term Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745)
InterPro IPR002502 N-acetylmuramoyl-L-alanine amidase, family 2; Gene3D:G3DSA:3.40.80.10 Amidase_2
InterPro IPR002502 N-acetylmuramoyl-L-alanine amidase, family 2; HMMPfam:PF01510 Amidase_2
InterPro IPR002502 N-acetylmuramoyl-L-alanine amidase, family 2; HMMSmart:SM00644 Ami_2
InterPro IPR002502 N-acetylmuramoyl-L-alanine amidase, family 2; superfamily:SSF55846 Amidase_2
Blast Hits [sprot] AMPD_CITFR (sp|P82974) 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD OS=Citrobacter freundii GN=ampD PE=1 SV=1
SynWH7803_1431 Gene product Na+/alanine symporter
InterPro IPR001463 Sodium:alanine symporter; FPrintScan:PR00175 NAALASMPORT
InterPro IPR001463 Sodium:alanine symporter; HMMPfam:PF01235 Na_Ala_symp
InterPro IPR001463 Sodium:alanine symporter; HMMTigr:TIGR00835 agcS
InterPro IPR001463 Sodium:alanine symporter; PatternScan:PS00873 NA_ALANINE_SYMP
Blast Hits [nr] ref|ZP_05046078.1| sodium:alanine symporter family protein [Cyanobium sp. PCC 7001] gi|197626828|gb|EDY39387.1| sodium:alanine symporter family protein [Cyanobium sp. PCC 7001]
SynWH7803_1533 InterPro IPR009006 Alanine racemase/group IV decarboxylase, C-terminal; superfamily:SSF50621 Racem_decarbox_C
SynWH7803_1555 InterPro IPR001930 Peptidase M1, membrane alanine aminopeptidase; HMMPanther:PTHR11533 Peptidase_M1
InterPro IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal; FPrintScan:PR00756 ALADIPTASE
InterPro IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal; HMMPfam:PF01433 Peptidase_M1
SynWH7803_1629 InterPro IPR007698 Alanine dehydrogenase/PNT, C-terminal; HMMPfam:PF01262 AlaDh_PNT_C
InterPro IPR007886 Alanine dehydrogenase/PNT, N-terminal; HMMPfam:PF05222 AlaDh_PNT_N
InterPro IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2; PatternScan:PS00837 ALADH_PNT_2
SynWH7803_1756 Gene product D-alanine--D-alanine ligase
GO term Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716)
InterPro IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site; PatternScan:PS00843 DALA_DALA_LIGASE_1
InterPro IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site; PatternScan:PS00844 DALA_DALA_LIGASE_2
InterPro IPR005905 D-alanine--D-alanine ligase; HMMTigr:TIGR01205 D_ala_D_alaTIGR
InterPro IPR011095 D-alanine--D-alanine ligase, C-terminal; HMMPfam:PF07478 Dala_Dala_lig_C
InterPro IPR011127 D-alanine--D-alanine ligase, N-terminal; HMMPfam:PF01820 Dala_Dala_lig_N
Blast Hits [TAIR_pep] AT3G08840.2 | Symbols: | D-alanine--D-alanine ligase family | chr3:2679648-2686157 REVERSE
Blast Hits [nr] ref|ZP_01124671.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7805] gi|88787104|gb|EAR18262.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7805]
Blast Hits [sprot] DDL_SYNS3 (sp|Q0IC71) D-alanine--D-alanine ligase OS=Synechococcus sp. (strain CC9311) GN=ddl PE=3 SV=1
SynWH7803_1984 GO term Molecular Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase activity (GO:0008764)
InterPro IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase; HMMTigr:TIGR01087 murD
Blast Hits [sprot] MURD_SYNSC (sp|Q3AHP0) UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Synechococcus sp. (strain CC9605) GN=murD PE=3 SV=1
SynWH7803_2010 Gene product Alanine dehydrogenase
GO term Molecular Function: alanine dehydrogenase activity (GO:0000286)
InterPro IPR007698 Alanine dehydrogenase/PNT, C-terminal; HMMPfam:PF01262 AlaDh_PNT_C
InterPro IPR007886 Alanine dehydrogenase/PNT, N-terminal; HMMPfam:PF05222 AlaDh_PNT_N
InterPro IPR008141 Alanine dehydrogenase/pyridine nucleotide transhydrogenase; HMMTigr:TIGR00518 alaDH
Blast Hits [nr] ref|ZP_01122900.1| alanine dehydrogenase [Synechococcus sp. WH 7805] gi|88788602|gb|EAR19757.1| alanine dehydrogenase [Synechococcus sp. WH 7805]
Blast Hits [sprot] DHA_MYCTU (sp|P30234) Alanine dehydrogenase OS=Mycobacterium tuberculosis GN=ald PE=1 SV=2
SynWH7803_1036 Gene product N-acetylmuramoyl-L-alanine amidase
GO term Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745)
Blast Hits [sprot] CWLB_BACSU (sp|Q02114) N-acetylmuramoyl-L-alanine amidase lytC OS=Bacillus subtilis GN=lytC PE=1 SV=1
SynWH7803_1266 Gene product D-alanyl-D-alanine carboxypeptidase
Blast Hits [nr] ref|ZP_01124061.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Synechococcus sp. WH 7805] gi|88787539|gb|EAR18696.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Synechococcus sp. WH 7805]
Blast Hits [sprot] DAC_ACTSP (sp|P39045) D-alanyl-D-alanine carboxypeptidase OS=Actinomadura sp. (strain R39) GN=dac PE=1 SV=1
SynWH7803_1316 Gene product D-alanyl-D-alanine carboxypeptidase
SynWH7803_1345 Gene product Alanine--glyoxylate transaminase
Blast Hits [TAIR_pep] AT2G13360.2 | Symbols: AGT, AGT1 | AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE); alanine-glyoxylate transaminase/ serine-glyoxylate transaminase/ serine-pyruvate transaminase | chr2:5539417-5540902 REVERSE
Blast Hits [nr] ref|ZP_01123989.1| serine:pyruvate/alanine:glyoxylate aminotransferase [Synechococcus sp. WH 7805] gi|88787467|gb|EAR18624.1| serine:pyruvate/alanine:glyoxylate aminotransferase [Synechococcus sp. WH 7805]
SynWH7803_1754 Gene product L-alanine-DL-glutamate epimerase
SynWH7803_0375 GO term Biological Process: L-phenylalanine biosynthetic process (GO:0009094)
SynWH7803_1290 GO term Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826)
SynWH7803_1712 GO term Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826)
SynWH7803_2398 GO term Molecular Function: alanine-tRNA ligase activity (GO:0004813)
Blast Hits [TAIR_pep] AT5G22800.1 | Symbols: EMB1030 | EMB1030 (EMBRYO DEFECTIVE 1030); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding | chr5:7616221-7619961 REVERSE
SynWH7803_1534 Blast Hits [nr] ref|ZP_01124421.1| ribosomal-protein-alanine acetyltransferase [Synechococcus sp. WH 7805] gi|88786854|gb|EAR18012.1| ribosomal-protein-alanine acetyltransferase [Synechococcus sp. WH 7805]
Blast Hits [sprot] RIMI_BACSU (sp|O05517) Putative ribosomal-protein-alanine acetyltransferase OS=Bacillus subtilis GN=rimI PE=3 SV=1
SynWH7803_0736 Blast Hits [sprot] ALR_STAS1 (sp|Q49Z24) Alanine racemase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=alr PE=3 SV=1
SynWH7803_0883 Blast Hits [sprot] DDLB_PSESM (sp|Q87WY7) D-alanine--D-alanine ligase B OS=Pseudomonas syringae pv. tomato GN=ddlB PE=3 SV=1
SynWH7803_0906 Blast Hits [sprot] C79A2_ARATH (sp|Q9FLC8) Phenylalanine N-hydroxylase OS=Arabidopsis thaliana GN=CYP79A2 PE=1 SV=1
SynWH7803_0924 Blast Hits [sprot] ALR_ANOFW (sp|B7GFP5) Alanine racemase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=alr PE=3 SV=1
SynWH7803_1029 Blast Hits [sprot] AT2L1_BOVIN (sp|Q5E9S4) Alanine--glyoxylate aminotransferase 2-like 1 OS=Bos taurus GN=AGXT2L1 PE=2 SV=1
SynWH7803_1320 Blast Hits [sprot] DDPX_SYNY3 (sp|P74268) D-alanyl-D-alanine dipeptidase OS=Synechocystis sp. (strain PCC 6803) GN=ddpX PE=1 SV=1
SynWH7803_1990 Blast Hits [TAIR_pep] AT2G37040.1 | Symbols: pal1, ATPAL1 | pal1 (Phe ammonia lyase 1); phenylalanine ammonia-lyase | chr2:15557602-15560237 REVERSE
Blast Hits [sprot] PALY_CAMSI (sp|P45726) Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1
SynWH7803_0046 Blast Hits [TAIR_pep] AT2G13360.2 | Symbols: AGT, AGT1 | AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE); alanine-glyoxylate transaminase/ serine-glyoxylate transaminase/ serine-pyruvate transaminase | chr2:5539417-5540902 REVERSE
SynWH7803_1193 Blast Hits [TAIR_pep] AT1G55800.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATP binding / nucleotide binding / phenylalanine-tRNA ligase (TAIR:AT1G55790.1); Has 134 Blast hits to 131 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 34; Fungi - 27; Plants - 66; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:20856922-20858235 REVERSE
SynWH7803_1796 Blast Hits [TAIR_pep] AT3G08840.3 | Symbols: | D-alanine--D-alanine ligase family | chr3:2680568-2686157 REVERSE
SynWH7803_2392 Blast Hits [TAIR_pep] AT1G11930.2 | Symbols: | alanine racemase family protein | chr1:4028783-4030298 FORWARD
SynWH7803_0462 Blast Hits [nr] ref|ZP_01123366.1| possible N-acetylmuramoyl-L-alanine amidase [Synechococcus sp. WH 7805] gi|88787894|gb|EAR19050.1| possible N-acetylmuramoyl-L-alanine amidase [Synechococcus sp. WH 7805]
SynWH7803_0996 Blast Hits [nr] ref|ZP_01123835.1| possible N-acetylmuramoyl-L-alanine amidase [Synechococcus sp. WH 7805] gi|88787313|gb|EAR18470.1| possible N-acetylmuramoyl-L-alanine amidase [Synechococcus sp. WH 7805]

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Gene set by search TXT
ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
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