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Full-text search result: 91 genes by "DL" TXT SET

Synechococcus sp. WH 7803 (91 genes ) TXT SET

SynWH7803_0011 InterPro IPR013822 Signal recognition particle, SRP54 subunit, helical bundle; Gene3D:G3DSA:1.20.120.140 SRP54_helical
InterPro IPR013822 Signal recognition particle, SRP54 subunit, helical bundle; HMMPfam:PF02881 SRP54_N
InterPro IPR013822 Signal recognition particle, SRP54 subunit, helical bundle; superfamily:SSF47364 SRP54
SynWH7803_0144 InterPro NULL NULL; HMMPfam:PF01738 DLH
Blast Hits [sprot] DLHH_SYNY3 (sp|P73163) Putative carboxymethylenebutenolidase OS=Synechocystis sp. (strain PCC 6803) GN=sll1298 PE=3 SV=1
SynWH7803_0713 InterPro IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle; Gene3D:G3DSA:1.20.120.80 CytC_oxdse_III_a-bundle
SynWH7803_0930 InterPro NULL NULL; HMMPfam:PF01738 DLH
SynWH7803_1687 InterPro NULL NULL; HMMPfam:PF01738 DLH
SynWH7803_1731 InterPro IPR013822 Signal recognition particle, SRP54 subunit, helical bundle; Gene3D:G3DSA:1.20.120.140 SRP54_helical
InterPro IPR013822 Signal recognition particle, SRP54 subunit, helical bundle; HMMPfam:PF02881 SRP54_N
InterPro IPR013822 Signal recognition particle, SRP54 subunit, helical bundle; superfamily:SSF47364 SRP54
SynWH7803_1836 InterPro IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain; Gene3D:G3DSA:1.10.1160.10 Glu/Gln-tRNA-synth_Ic_a-bdl
SynWH7803_1873 InterPro IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle; Gene3D:G3DSA:1.20.120.80 CytC_oxdse_III_a-bundle
SynWH7803_1927 InterPro IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain; Gene3D:G3DSA:1.10.1160.10 Glu/Gln-tRNA-synth_Ic_a-bdl
SynWH7803_2065 InterPro IPR012131 Histidinol dehydrogenase, prokaryotic-type; HMMPanther:PTHR21256:SF2 Hstdl_DH_prok
SynWH7803_2161 InterPro NULL NULL; HMMPfam:PF01738 DLH
SynWH7803_2450 InterPro NULL NULL; HMMPfam:PF01738 DLH
Blast Hits [sprot] DLHH_YEAST (sp|Q07505) Putative carboxymethylenebutenolidase OS=Saccharomyces cerevisiae GN=YDL086W PE=1 SV=1
SynWH7803_1754 Gene product L-alanine-DL-glutamate epimerase
SynWH7803_1433 Gene symbol mdlB
SynWH7803_1756 Gene symbol ddl
Blast Hits [sprot] DDL_SYNS3 (sp|Q0IC71) D-alanine--D-alanine ligase OS=Synechococcus sp. (strain CC9311) GN=ddl PE=3 SV=1
SynWH7803_0124 Blast Hits [TAIR_pep] AT3G11540.2 | Symbols: SPY | SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups | chr3:3632842-3637547 FORWARD
Blast Hits [nr] ref|YP_376131.1| O-linked N-acetylglucosamine transferase [Synechococcus sp. CC9902] gi|78167991|gb|ABB25088.1| O-linked N-acetylglucosamine transferase SPINDLY family-like [Synechococcus sp. CC9902]
Blast Hits [sprot] SPY_PETHY (sp|O82039) Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1
SynWH7803_0164 Blast Hits [nr] ref|NP_849259.2| actin filament-associated protein 1-like 1 [Mus musculus] gi|81898184|sp|Q8BZI0.1|AF1L1_MOUSE RecName: Full=Actin filament-associated protein 1-like 1; Short=AFAP1-like protein 1 gi|26330516|dbj|BAC28988.1| unnamed protein product [Mus musculus] gi|148677811|gb|EDL09758.1| expressed sequence AI173486, isoform CRA_c [Mus musculus] gi|151555501|gb|AAI48623.1| Actin filament associated protein 1-like 1 [synthetic construct] gi|157170132|gb|AAI53189.1| Actin filament associated protein 1-like 1 [synthetic construct] gi|187956755|gb|AAI38924.1| Actin filament associated protein 1-like 1 [Mus musculus]
SynWH7803_0909 Blast Hits [nr] ref|ZP_01984235.1| maltose transport system permease protein MalF [Vibrio harveyi HY01] gi|148872078|gb|EDL70895.1| maltose transport system permease protein MalF [Vibrio harveyi HY01]
SynWH7803_1686 Blast Hits [nr] ref|ZP_01866047.1| NHL repeat [Vibrio shilonii AK1] gi|148838630|gb|EDL55570.1| NHL repeat [Vibrio shilonii AK1]
SynWH7803_0089 Blast Hits [sprot] AER61_CHICK (sp|Q5NDL3) Uncharacterized glycosyltransferase AER61 OS=Gallus gallus GN=AER61 PE=2 SV=2
SynWH7803_0109 Blast Hits [sprot] LCNDL_LACLA (sp|Q9CJB7) Lactococcin A secretion protein lcnD-like OS=Lactococcus lactis subsp. lactis GN=lcnD PE=3 SV=1
SynWH7803_0125 Blast Hits [TAIR_pep] AT3G11540.2 | Symbols: SPY | SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups | chr3:3632842-3637547 FORWARD
Blast Hits [sprot] SPY_SOLLC (sp|Q8RVB2) Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1
SynWH7803_0180 Blast Hits [sprot] SKA2_DANRE (sp|Q0P426) Spindle and kinetochore-associated protein 2 OS=Danio rerio GN=ska2 PE=2 SV=2
SynWH7803_0191 Blast Hits [sprot] NUDL_PHOLL (sp|Q7N3M0) Uncharacterized Nudix hydrolase nudL OS=Photorhabdus luminescens subsp. laumondii GN=nudL PE=3 SV=1
SynWH7803_0214 Blast Hits [sprot] DLD_ARATH (sp|Q94AX4) D-lactate dehydrogenase [cytochrome], mitochondrial OS=Arabidopsis thaliana GN=DLD PE=1 SV=1
SynWH7803_0883 Blast Hits [sprot] DDLB_PSESM (sp|Q87WY7) D-alanine--D-alanine ligase B OS=Pseudomonas syringae pv. tomato GN=ddlB PE=3 SV=1
SynWH7803_0950 Blast Hits [sprot] VDLC_HELPY (sp|O05730) Probable short-chain type dehydrogenase/reductase vdlC OS=Helicobacter pylori GN=vdlC PE=3 SV=2
SynWH7803_1013 Blast Hits [sprot] SC23A_BOVIN (sp|A2VDL8) Protein transport protein Sec23A OS=Bos taurus GN=SEC23A PE=2 SV=1
SynWH7803_1058 Blast Hits [sprot] MDLA_ECOLI (sp|P77265) Multidrug resistance-like ATP-binding protein mdlA OS=Escherichia coli (strain K12) GN=mdlA PE=3 SV=1
SynWH7803_1118 Blast Hits [sprot] YCF42_PORYE (sp|Q1XDL4) Putative peroxiredoxin ycf42 OS=Porphyra yezoensis GN=ycf42 PE=3 SV=1
SynWH7803_1426 Blast Hits [sprot] YCF36_PORYE (sp|Q1XDL3) Uncharacterized protein ycf36 OS=Porphyra yezoensis GN=ycf36 PE=3 SV=1
SynWH7803_1566 Blast Hits [sprot] TRPD_METKA (sp|Q8TXJ5) Anthranilate phosphoribosyltransferase OS=Methanopyrus kandleri GN=trpD PE=3 SV=1
SynWH7803_1744 Blast Hits [sprot] DLDH_SYNY3 (sp|P72740) Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=lpdA PE=1 SV=3
SynWH7803_1808 Blast Hits [sprot] IDIA_THEEB (sp|Q8DLH9) Iron deficiency-induced protein A OS=Thermosynechococcus elongatus (strain BP-1) GN=idiA PE=2 SV=1
SynWH7803_1913 Blast Hits [sprot] DLG4_DANRE (sp|Q6R005) Disks large homolog 4 OS=Danio rerio GN=dlg4 PE=2 SV=1
SynWH7803_2331 Blast Hits [sprot] HIS8_STRGC (sp|A8AY31) Histidinol-phosphate aminotransferase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=hisC PE=3 SV=1
SynWH7803_0273 Blast Hits [pln_est] gb|GO554483|GO554483 Mdlv4003H07_e1919.b1 Mdlv Malus x domestica cDNA 3' similar to ref|ZP_00086472.1| hypothetical protein [Pseudomonas fluorescens PfO-1], mRNA sequence.
SynWH7803_0290 Blast Hits [pln_est] gb|FE658834|FE658834 CBYZ9867.g1 CBYZ Panicum virgatum Kanlow 4 day old seedlings Panicum virgatum cDNA clone CBYZ9867 3', mRNA sequence.
SynWH7803_0322 Blast Hits [pln_est] emb|AM815645|AM815645 AM815645 seedling library, SL Nicotiana tabacum cDNA clone nt002047060, mRNA sequence.
SynWH7803_0361 Blast Hits [pln_est] gb|GH226570|GH226570 HVSMEm0017N09f2 Hordeum vulgare green seedling (Blumeria infected) cDNA library HVSMEm (HVcDNA0014)2 Hordeum vulgare subsp. vulgare cDNA clone HV__Ea0042H10r, mRNA sequence.
SynWH7803_0390 Blast Hits [pln_est] dbj|EV176754|EV176754 0144865 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
SynWH7803_0457 Blast Hits [pln_est] gb|GW574846|GW574846 Pa_FMini_14A08_T3 Fern fiddlehead library Pteridium aquilinum cDNA clone Pa_FMini_14A08 3' similar to ref|XP_002311618.1| hypothetical protein POPTRDRAFT_564827 - Populus trichocarpa. Score = 286 bits (733), Expect = 9e-76, mRNA sequence.
SynWH7803_0468 Blast Hits [pln_est] gb|FL891759|FL891759 CCGN9592.g1 CCGN Panicum virgatum etiolated seedlings (L) Panicum virgatum cDNA clone CCGN9592 3', mRNA sequence.
SynWH7803_0561 Blast Hits [pln_est] gb|CV467563|CV467563 Mdlv4006c14.y2 Mdlv Malus x domestica cDNA clone Mdlv4006c14 5' similar to SW:COBI_PSEDE P21639 PRECORRIN-2 C20-METHYLTRANSFERASE, mRNA sequence.
SynWH7803_0569 Blast Hits [pln_est] dbj|EX407878|EX407878 GQ03519.B7_N16 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03519_N16 5', mRNA sequence.
SynWH7803_0702 Blast Hits [pln_est] emb|AM830152|AM830152 AM830152 DL, diurnal library Nicotiana tabacum cDNA clone nt005124087, mRNA sequence.
SynWH7803_0851 Blast Hits [pln_est] emb|AM792930|AM792930 AM792930 seedling library, SL Nicotiana tabacum cDNA clone nt002305019, mRNA sequence.
SynWH7803_0899 Blast Hits [pln_est] dbj|DV684292|DV684292 CGN-25146 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w19f16 5', mRNA sequence.
SynWH7803_0949 Blast Hits [pln_est] emb|AM815645|AM815645 AM815645 seedling library, SL Nicotiana tabacum cDNA clone nt002047060, mRNA sequence.
SynWH7803_1073 Blast Hits [pln_est] gb|GO554853|GO554853 Mdlv4011N15_e2376.b1 Mdlv Malus x domestica cDNA 3' similar to ref|ZP_00086820.1| hypothetical protein [Pseudomonas fluorescens PfO-1], mRNA sequence.
SynWH7803_1121 Blast Hits [pln_est] gb|GO365486|GO365486 GQ03516.SP6.r_J13 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03516_J13 3', mRNA sequence.
SynWH7803_1136 Blast Hits [pln_est] gb|BQ161348|BQ161348 WHE1107_C02_F03ZT Wheat etiolated seedling root normalized cDNA library Triticum aestivum cDNA clone WHE1107_C02_F03, mRNA sequence.
SynWH7803_1151 Blast Hits [pln_est] dbj|DV685014|DV685014 CGN-26178 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w32n5 5', mRNA sequence.
SynWH7803_1185 Blast Hits [pln_est] dbj|EX399503|EX399503 GQ03415.B7_P18 GQ034 - Needles - Mid-season Picea glauca cDNA clone GQ03415_P18 5', mRNA sequence.
SynWH7803_1193 Blast Hits [pln_est] gb|CB924652|CB924652 ABA1_1_C08.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor cDNA clone ABA1_1_C08_A012 3', mRNA sequence.
SynWH7803_1197 Blast Hits [pln_est] emb|AM824547|AM824547 AM824547 seedling library, SL Nicotiana tabacum cDNA clone nt002244095, mRNA sequence.
SynWH7803_1232 Blast Hits [pln_est] dbj|EV169676|EV169676 0148335 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
SynWH7803_1301 Blast Hits [pln_est] gb|CJ771949|CJ771949 CJ771949 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf44e16 3', mRNA sequence.
SynWH7803_1355 Blast Hits [pln_est] dbj|EX404050|EX404050 GQ03509.B7_G11 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03509_G11 5', mRNA sequence.
SynWH7803_1361 Blast Hits [pln_est] emb|AM826997|AM826997 AM826997 DL, diurnal library Nicotiana tabacum cDNA clone nt005030096, mRNA sequence.
SynWH7803_1390 Blast Hits [pln_est] gb|CO912809|CO912809 USDA-FP_10903 Rough Lemon seedling root Citrus jambhiri cDNA clone RLR07_A07 5', mRNA sequence.
SynWH7803_1400 Blast Hits [pln_est] gb|CJ747734|CJ747734 CJ747734 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf38c21 5', mRNA sequence.
SynWH7803_1493 Blast Hits [pln_est] gb|GO365411|GO365411 GQ03515.B7P1_P19 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03515_P19 5', mRNA sequence.
SynWH7803_1585 Blast Hits [pln_est] dbj|EV169676|EV169676 0148335 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
SynWH7803_1615 Blast Hits [pln_est] gb|CO173340|CO173340 NDL1_35_C07.g1_A029 Needles control Pinus taeda cDNA clone NDL1_35_C07_A029 5', mRNA sequence.
SynWH7803_1755 Blast Hits [pln_est] gb|GW575068|GW575068 Pa_FMidi_53H03_T3 Fern fiddlehead library Pteridium aquilinum cDNA clone Pa_FMidi_53H03 3' similar to ref|YP_001518952.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acaryochloris marina. Score = 389 bits (1000), Expect = e-106, mRNA sequence.
SynWH7803_1766 Blast Hits [pln_est] gb|GW402299|GW402299 C102C04R Fragaria x ananassa var. Chandler sustractive red fruit UCO library C1 Fragaria x ananassa cDNA clone C102C04R, mRNA sequence.
SynWH7803_1774 Blast Hits [pln_est] gb|FE647753|FE647753 CBYZ7121.g1 CBYZ Panicum virgatum Kanlow 4 day old seedlings Panicum virgatum cDNA clone CBYZ7121 3', mRNA sequence.
SynWH7803_1825 Blast Hits [pln_est] emb|AM787062|AM787062 AM787062 seedling library, SL Nicotiana tabacum cDNA clone nt002236043, mRNA sequence.
SynWH7803_1880 Blast Hits [pln_est] gb|CX614161|CX614161 GABR1_12_A05.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_12_A05_A002 5', mRNA sequence.
SynWH7803_1882 Blast Hits [pln_est] gb|GO532355|GO532355 Mdltb7523F14.g1 Apple_EST_Mdltb Malus x domestica cDNA 5' similar to dbj|BAA75684.1| transfactor [Nicotiana tabacum], mRNA sequence.
SynWH7803_1931 Blast Hits [pln_est] gb|BQ161348|BQ161348 WHE1107_C02_F03ZT Wheat etiolated seedling root normalized cDNA library Triticum aestivum cDNA clone WHE1107_C02_F03, mRNA sequence.
SynWH7803_1935 Blast Hits [pln_est] dbj|DT713782|DT713782 s13dFA33D01SD010_507734 Tall fescue, Festuca arundinacea Schreb, young seedlings Festuca arundinacea cDNA, mRNA sequence.
SynWH7803_1996 Blast Hits [pln_est] gb|BF621819|BF621819 HVSMEa0001A09f Hordeum vulgare seedling shoot EST library HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEa0001A09f, mRNA sequence.
SynWH7803_2089 Blast Hits [pln_est] gb|GR178705|GR178705 CBPG6387.b1 CBPG Mimulus guttatus IM62 roots, seedlings, fruits, callus (L) Mimulus guttatus cDNA clone CBPG6387 5', mRNA sequence.
SynWH7803_2114 Blast Hits [pln_est] gb|CD232372|CD232372 SS1_45_A12.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_45_A12_A012 3', mRNA sequence.
SynWH7803_2170 Blast Hits [pln_est] gb|CI629485|CI629485 CI629485 Oryza sativa (japonica cultivar-group) leaf of seedling irradiated with UVC [0.7 min ( 226.8J/m2)] Oryza sativa Japonica Group cDNA clone J05B3043N11T3 5', mRNA sequence.
SynWH7803_2199 Blast Hits [pln_est] gb|GO364546|GO364546 GQ03417.B7.r_C05 GQ034 - Needles - Mid-season Picea glauca cDNA clone GQ03417_C05 5', mRNA sequence.
SynWH7803_2277 Blast Hits [pln_est] gb|GR177238|GR177238 CBPG5614.b1 CBPG Mimulus guttatus IM62 roots, seedlings, fruits, callus (L) Mimulus guttatus cDNA clone CBPG5614 5', mRNA sequence.
SynWH7803_2293 Blast Hits [pln_est] gb|CD432800|CD432800 ETH1_33_G07.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_33_G07_A002 3', mRNA sequence.
SynWH7803_2317 Blast Hits [pln_est] emb|AM807523|AM807523 AM807523 seedling library, SL Nicotiana tabacum cDNA clone nt002169008, mRNA sequence.
SynWH7803_2344 Blast Hits [pln_est] dbj|DV684292|DV684292 CGN-25146 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w19f16 5', mRNA sequence.
SynWH7803_2349 Blast Hits [pln_est] dbj|EX407246|EX407246 GQ03518.B7_C02 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03518_C02 5', mRNA sequence.
SynWH7803_2423 Blast Hits [pln_est] gb|FL901504|FL901504 CCGN15667.g1 CCGN Panicum virgatum etiolated seedlings (L) Panicum virgatum cDNA clone CCGN15667 3', mRNA sequence.
SynWH7803_2479 Blast Hits [pln_est] gb|BY839735|BY839735 BY839735 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet33d03 5', mRNA sequence.
SynWH7803_0067 Blast Hits [TAIR_pep] AT1G62830.1 | Symbols: LDL1, SWP1, ATSWP1 | LDL1 (LSD1-LIKE1); amine oxidase/ electron carrier/ oxidoreductase | chr1:23264638-23267172 REVERSE
SynWH7803_0116 Blast Hits [TAIR_pep] AT3G11540.1 | Symbols: SPY | SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups | chr3:3632842-3637547 FORWARD
SynWH7803_0460 Blast Hits [TAIR_pep] AT4G19540.1 | Symbols: INDL | INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE) | chr4:10657517-10659094 FORWARD
SynWH7803_0507 Blast Hits [TAIR_pep] AT3G05630.1 | Symbols: PLDP2, PDLZ2, PLDZETA2 | PLDP2; phospholipase D | chr3:1635321-1640105 FORWARD
SynWH7803_1984 Blast Hits [TAIR_pep] AT4G16310.1 | Symbols: LDL3 | LDL3 (LSD1-LIKE3); amine oxidase/ electron carrier/ oxidoreductase | chr4:9218636-9224764 FORWARD
SynWH7803_2075 Blast Hits [TAIR_pep] AT4G26690.1 | Symbols: SHV3, MRH5, GPDL2 | SHV3 (SHAVEN 3); glycerophosphodiester phosphodiesterase/ kinase | chr4:13456793-13459890 REVERSE

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Gene set by search TXT
ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
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