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Full-text search result: 18 genes by "CLP" TXT SET

Synechococcus sp. WH 7803 (18 genes ) TXT SET

SynWH7803_0064 Gene symbol clpX
InterPro IPR004487 Clp protease, ATP-binding subunit ClpX; HMMPanther:PTHR11262:SF4 ClpX
InterPro IPR004487 Clp protease, ATP-binding subunit ClpX; HMMTigr:TIGR00382 clpX
InterPro IPR010603 Zinc finger, C4-type; HMMPfam:PF06689 zf-C4_ClpX
InterPro IPR019489 Clp ATPase, C-terminal; HMMPfam:PF10431 ClpB_D2-small
Blast Hits [TAIR_pep] AT5G53350.1 | Symbols: CLPX | CLPX; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | chr5:21644060-21647503 FORWARD
Blast Hits [nr] ref|ZP_01079136.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus sp. RS9917] gi|86169005|gb|EAQ70261.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus sp. RS9917]
Blast Hits [sprot] CLPX_SYNS3 (sp|Q0IE20) ATP-dependent Clp protease ATP-binding subunit clpX OS=Synechococcus sp. (strain CC9311) GN=clpX PE=3 SV=1
SynWH7803_0070 Gene product Protease subunit of ATP-dependent Clp protease
Gene symbol clpP
InterPro IPR001907 Peptidase S14, ClpP; FPrintScan:PR00127 CLPPROTEASEP
InterPro IPR001907 Peptidase S14, ClpP; HMMPanther:PTHR10381 Pept_S14_ClpP
InterPro IPR001907 Peptidase S14, ClpP; HMMPfam:PF00574 CLP_protease
InterPro IPR001907 Peptidase S14, ClpP; HMMTigr:TIGR00493 clpP
InterPro IPR018215 Peptidase S14, ClpP, active site; PatternScan:PS00382 CLP_PROTEASE_HIS
Blast Hits [TAIR_pep] AT1G02560.1 | Symbols: CLPP5, NCLPP5, NCLPP1 | CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase | chr1:538000-539805 FORWARD
Blast Hits [nr] ref|ZP_01125465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus sp. WH 7805] gi|88786150|gb|EAR17312.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus sp. WH 7805]
Blast Hits [sprot] CLPP1_SYNPX (sp|Q7UA36) ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain WH8102) GN=clpP1 PE=3 SV=1
SynWH7803_0369 Gene product ATP-dependent Clp protease adaptor protein ClpS
Gene symbol clpS
InterPro IPR003769 Adaptor protein ClpS, core; HMMPfam:PF02617 ClpS
InterPro IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like; superfamily:SSF54736 Ribosomal_L7/12_C/ClpS-like
Blast Hits [TAIR_pep] AT1G68660.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein ClpS, core (InterPro:IPR003769), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719); Has 513 Blast hits to 513 proteins in 129 species: Archae - 0; Bacteria - 273; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink). | chr1:25778058-25779083 REVERSE
Blast Hits [sprot] CLPS_SYNS9 (sp|Q3AUR5) ATP-dependent Clp protease adapter protein clpS OS=Synechococcus sp. (strain CC9902) GN=clpS PE=3 SV=1
SynWH7803_0748 Gene product Chaperone ClpB
Gene symbol clpB
InterPro IPR001270 Chaperonin clpA/B; FPrintScan:PR00300 CLPPROTEASEA
InterPro IPR001270 Chaperonin clpA/B; PatternScan:PS00871 CLPAB_2
InterPro IPR018368 Chaperonin ClpA/B, conserved site; PatternScan:PS00870 CLPAB_1
InterPro IPR019489 Clp ATPase, C-terminal; HMMPfam:PF10431 ClpB_D2-small
Blast Hits [TAIR_pep] AT5G15450.1 | Symbols: APG6, CLPB3, CLPB-P | CLPB3 (CASEIN LYTIC PROTEINASE B3); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | chr5:5014399-5018255 REVERSE
Blast Hits [nr] ref|ZP_01125074.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Synechococcus sp. WH 7805] gi|88786317|gb|EAR17477.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Synechococcus sp. WH 7805]
Blast Hits [sprot] CLPB_PROMM (sp|Q7V8B1) Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1
SynWH7803_0749 Gene product Endopeptidase Clp ATP-binding chain B
InterPro IPR004176 Clp, N-terminal; HMMPfam:PF02861 Clp_N
Blast Hits [TAIR_pep] AT5G15450.1 | Symbols: APG6, CLPB3, CLPB-P | CLPB3 (CASEIN LYTIC PROTEINASE B3); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | chr5:5014399-5018255 REVERSE
Blast Hits [nr] ref|ZP_01125074.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Synechococcus sp. WH 7805] gi|88786317|gb|EAR17477.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Synechococcus sp. WH 7805]
Blast Hits [pln_est] dbj|DW085401|DW085401 CLPX8469.b1_I05.ab1 CLP(XYZ) lettuce perennis Lactuca perennis cDNA clone CLPX8469, mRNA sequence.
Blast Hits [sprot] CLPB_PROMM (sp|Q7V8B1) Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1
SynWH7803_1210 Gene product ATP-dependent Clp protease adaptor
Gene symbol clpS
InterPro IPR003769 Adaptor protein ClpS, core; HMMPfam:PF02617 ClpS
InterPro IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like; superfamily:SSF54736 Ribosomal_L7/12_C/ClpS-like
Blast Hits [TAIR_pep] AT1G68660.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein ClpS, core (InterPro:IPR003769), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719); Has 513 Blast hits to 513 proteins in 129 species: Archae - 0; Bacteria - 273; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink). | chr1:25778058-25779083 REVERSE
Blast Hits [nr] ref|ZP_01124117.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp. WH 7805] gi|88787595|gb|EAR18752.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp. WH 7805]
Blast Hits [sprot] CLPS_SYNY3 (sp|P73634) ATP-dependent Clp protease adapter protein clpS OS=Synechocystis sp. (strain PCC 6803) GN=clpS PE=3 SV=1
SynWH7803_1214 Gene product ATP-dependent Clp protease proteolytic subunit
Gene symbol clpP
InterPro IPR001907 Peptidase S14, ClpP; FPrintScan:PR00127 CLPPROTEASEP
InterPro IPR001907 Peptidase S14, ClpP; HMMPanther:PTHR10381 Pept_S14_ClpP
InterPro IPR001907 Peptidase S14, ClpP; HMMPfam:PF00574 CLP_protease
InterPro IPR001907 Peptidase S14, ClpP; HMMTigr:TIGR00493 clpP
InterPro IPR018215 Peptidase S14, ClpP, active site; PatternScan:PS00381 CLP_PROTEASE_SER
Blast Hits [TAIR_pep] AT1G02560.1 | Symbols: CLPP5, NCLPP5, NCLPP1 | CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase | chr1:538000-539805 FORWARD
Blast Hits [nr] ref|ZP_01124113.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. WH 7805] gi|88787591|gb|EAR18748.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. WH 7805]
Blast Hits [sprot] CLPP2_SYNPX (sp|Q7U6N7) ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain WH8102) GN=clpP2 PE=3 SV=1
SynWH7803_1535 Gene product ATP-dependent Clp protease ATP-binding subunit clpA homolog
Gene symbol clpA
InterPro IPR001270 Chaperonin clpA/B; FPrintScan:PR00300 CLPPROTEASEA
InterPro IPR001270 Chaperonin clpA/B; PatternScan:PS00871 CLPAB_2
InterPro IPR004176 Clp, N-terminal; HMMPfam:PF02861 Clp_N
InterPro IPR018368 Chaperonin ClpA/B, conserved site; PatternScan:PS00870 CLPAB_1
InterPro IPR019489 Clp ATPase, C-terminal; HMMPfam:PF10431 ClpB_D2-small
Blast Hits [TAIR_pep] AT5G50920.1 | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC1; ATP binding / ATP-dependent peptidase/ ATPase | chr5:20715710-20719800 REVERSE
Blast Hits [sprot] CLPC_GUITH (sp|O78410) ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1
SynWH7803_1763 Gene product ATP-dependent Clp protease-like protein
Gene symbol clpP
InterPro IPR001907 Peptidase S14, ClpP; FPrintScan:PR00127 CLPPROTEASEP
InterPro IPR001907 Peptidase S14, ClpP; HMMPanther:PTHR10381 Pept_S14_ClpP
InterPro IPR001907 Peptidase S14, ClpP; HMMPfam:PF00574 CLP_protease
Blast Hits [TAIR_pep] AT4G17040.1 | Symbols: | ATP-dependent Clp protease proteolytic subunit, putative | chr4:9586740-9589297 REVERSE
Blast Hits [nr] ref|YP_729944.1| ATP-dependent Clp protease-like protein [Synechococcus sp. CC9311] gi|113882347|gb|ABI47305.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus sp. CC9311]
Blast Hits [sprot] CLPR_SYNY3 (sp|P74466) Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803) GN=clpR PE=3 SV=1
SynWH7803_1764 Gene product ATP-dependent Clp protease proteolytic subunit
Gene symbol clpP
InterPro IPR001907 Peptidase S14, ClpP; FPrintScan:PR00127 CLPPROTEASEP
InterPro IPR001907 Peptidase S14, ClpP; HMMPanther:PTHR10381 Pept_S14_ClpP
InterPro IPR001907 Peptidase S14, ClpP; HMMPfam:PF00574 CLP_protease
InterPro IPR018215 Peptidase S14, ClpP, active site; PatternScan:PS00381 CLP_PROTEASE_SER
InterPro IPR018215 Peptidase S14, ClpP, active site; PatternScan:PS00382 CLP_PROTEASE_HIS
Blast Hits [TAIR_pep] AT1G02560.1 | Symbols: CLPP5, NCLPP5, NCLPP1 | CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase | chr1:538000-539805 FORWARD
Blast Hits [nr] ref|ZP_01124679.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. WH 7805] gi|88787112|gb|EAR18270.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. WH 7805]
Blast Hits [sprot] CLPP3_SYNSC (sp|Q3ALC4) ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain CC9605) GN=clpP3 PE=3 SV=1
SynWH7803_2371 InterPro IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like; superfamily:SSF54736 Ribosomal_L7/12_C/ClpS-like
SynWH7803_2377 Gene product Chaperone ClpB
Gene symbol clpB
InterPro IPR001270 Chaperonin clpA/B; FPrintScan:PR00300 CLPPROTEASEA
InterPro IPR001270 Chaperonin clpA/B; PatternScan:PS00871 CLPAB_2
InterPro IPR004176 Clp, N-terminal; HMMPfam:PF02861 Clp_N
InterPro IPR018368 Chaperonin ClpA/B, conserved site; PatternScan:PS00870 CLPAB_1
InterPro IPR019489 Clp ATPase, C-terminal; HMMPfam:PF10431 ClpB_D2-small
Blast Hits [TAIR_pep] AT5G15450.1 | Symbols: APG6, CLPB3, CLPB-P | CLPB3 (CASEIN LYTIC PROTEINASE B3); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | chr5:5014399-5018255 REVERSE
Blast Hits [nr] ref|ZP_01125295.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Synechococcus sp. WH 7805] gi|88786173|gb|EAR17334.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Synechococcus sp. WH 7805]
Blast Hits [sprot] CLPB2_SYNPX (sp|Q7U3T3) Chaperone protein clpB 2 OS=Synechococcus sp. (strain WH8102) GN=clpB2 PE=3 SV=1
SynWH7803_1895 Gene product Periplasmic serine proteases (ClpP class)
SynWH7803_2338 Blast Hits [sprot] CLPB_BORBR (sp|Q7WHB6) Chaperone protein clpB OS=Bordetella bronchiseptica GN=clpB PE=3 SV=1
SynWH7803_1127 Blast Hits [pln_est] dbj|DW095240|DW095240 CLPY6343.b1_M02.ab1 CLP(XYZ) lettuce perennis Lactuca perennis cDNA clone CLPY6343, mRNA sequence.
SynWH7803_1321 Blast Hits [pln_est] dbj|DW093308|DW093308 CLPY4559.b1_N12.ab1 CLP(XYZ) lettuce perennis Lactuca perennis cDNA clone CLPY4559, mRNA sequence.
SynWH7803_0478 Blast Hits [TAIR_pep] AT1G12410.1 | Symbols: CLPR2, NCLPP2, CLP2 | CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2); serine-type endopeptidase | chr1:4223099-4224954 FORWARD
SynWH7803_1230 Blast Hits [TAIR_pep] AT5G15450.1 | Symbols: APG6, CLPB3, CLPB-P | CLPB3 (CASEIN LYTIC PROTEINASE B3); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | chr5:5014399-5018255 REVERSE

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Gene set by search TXT
ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
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