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Full-text search result: 77 genes by "955" TXT SET

Synechococcus sp. WH 7803 (77 genes ) TXT SET

SynWH7803_0269 InterPro IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site; PatternScan:PS00955 IGP_DEHYDRATASE_2
SynWH7803_0326 InterPro NULL NULL; superfamily:SSF53955 SSF53955
SynWH7803_0779 InterPro NULL NULL; superfamily:SSF53955 SSF53955
SynWH7803_0994 InterPro NULL NULL; HMMPfam:PF04955 HupE_UreJ
SynWH7803_1067 InterPro IPR016195 Polymerase/histidinol phosphatase-like; superfamily:SSF89550 PHP-like
SynWH7803_1201 InterPro NULL NULL; superfamily:SSF53955 SSF53955
SynWH7803_1273 InterPro IPR016195 Polymerase/histidinol phosphatase-like; superfamily:SSF89550 PHP-like
SynWH7803_1290 InterPro IPR009061 Putative DNA binding domain; superfamily:SSF46955 Putativ_DNA_bind
SynWH7803_1404 InterPro NULL NULL; superfamily:SSF53955 SSF53955
SynWH7803_1955 Gene product lipid-A-disaccharide synthase
Gene symbol lpxB
Function Cell wall/membrane biogenesis: Cell wall/membrane biogenesis
GO term Biological Process: lipid A biosynthetic process (GO:0009245)
GO term Molecular Function: lipid-A-disaccharide synthase activity (GO:0008915)
InterPro IPR003835 Glycosyl transferase, family 19; HMMPfam:PF02684 LpxB
InterPro IPR003835 Glycosyl transferase, family 19; HMMTigr:TIGR00215 lpxB
InterPro NULL NULL; Gene3D:G3DSA:3.40.50.2000 G3DSA:3.40.50.2000
InterPro NULL NULL; superfamily:SSF53756 SSF53756
Blast Hits [TAIR_pep] AT2G04560.1 | Symbols: | transferase, transferring glycosyl groups | chr2:1590341-1592667 REVERSE
Blast Hits [nr] ref|ZP_01122960.1| lipid-A-disaccharide synthase [Synechococcus sp. WH 7805] gi|88788662|gb|EAR19817.1| lipid-A-disaccharide synthase [Synechococcus sp. WH 7805]
Blast Hits [pln_est] gb|FC359156|FC359156 CAYY31659.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY31659 5', mRNA sequence.
Blast Hits [sprot] LPXB_PROMM (sp|Q7V5X6) Lipid-A-disaccharide synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=lpxB PE=3 SV=1
SynWH7803_2321 InterPro IPR004218 Prokaryotic glutathione synthetase, ATP-binding; HMMPfam:PF02955 GSH-S_ATP
SynWH7803_2352 InterPro NULL NULL; HMMPfam:PF04955 HupE_UreJ
SynWH7803_2353 InterPro NULL NULL; HMMPfam:PF04955 HupE_UreJ
SynWH7803_2354 InterPro NULL NULL; HMMPfam:PF04955 HupE_UreJ
SynWH7803_0955 Gene product hypothetical protein
Function Not in COGs: Not in COGs
Blast Hits [TAIR_pep] AT2G32950.1 | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase | chr2:13978000-13983282 FORWARD
Blast Hits [nr] ref|NP_897432.1| hypothetical protein SYNW1339 [Synechococcus sp. WH 8102] gi|33633043|emb|CAE07854.1| hypothetical [Synechococcus sp. WH 8102]
Blast Hits [pln_est] gb|BI786951|BI786951 sai55d02.y1 Gm-c1068 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1068-2475 5' similar to SW:COP1_PEA P93471 COP1 REGULATORY PROTEIN, mRNA sequence.
Blast Hits [sprot] COP1_PEA (sp|P93471) E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1
SynWH7803_0528 GO term Biological Process: regulation of barrier septum formation (GO:0032955)
SynWH7803_1218 GO term Molecular Function: potassium ion binding (GO:0030955)
SynWH7803_0403 Blast Hits [nr] ref|ZP_01123427.1| alanine racemase [Synechococcus sp. WH 7805] gi|88787955|gb|EAR19111.1| alanine racemase [Synechococcus sp. WH 7805]
SynWH7803_0692 Blast Hits [nr] ref|ZP_01123253.1| hypothetical protein WH7805_14358 [Synechococcus sp. WH 7805] gi|88788955|gb|EAR20110.1| hypothetical protein WH7805_14358 [Synechococcus sp. WH 7805]
SynWH7803_0893 Blast Hits [nr] ref|ZP_01125236.1| hypothetical protein WH7805_00955 [Synechococcus sp. WH 7805] gi|88786479|gb|EAR17639.1| hypothetical protein WH7805_00955 [Synechococcus sp. WH 7805]
SynWH7803_0977 Blast Hits [nr] ref|ZP_01079955.1| hypothetical protein RS9917_10856 [Synechococcus sp. RS9917] gi|86168674|gb|EAQ69931.1| hypothetical protein RS9917_10856 [Synechococcus sp. RS9917]
SynWH7803_1082 Blast Hits [nr] ref|ZP_01123955.1| probable arylesterase protein [Synechococcus sp. WH 7805] gi|88787433|gb|EAR18590.1| probable arylesterase protein [Synechococcus sp. WH 7805]
SynWH7803_1434 Blast Hits [nr] ref|ZP_01124320.1| RNA-binding S4 [Synechococcus sp. WH 7805] gi|88787798|gb|EAR18955.1| RNA-binding S4 [Synechococcus sp. WH 7805]
SynWH7803_1470 Blast Hits [nr] ref|ZP_01124364.1| ATPase [Synechococcus sp. WH 7805] gi|88786797|gb|EAR17955.1| ATPase [Synechococcus sp. WH 7805]
SynWH7803_1630 Blast Hits [nr] ref|ZP_01124522.1| hypothetical protein WH7805_04956 [Synechococcus sp. WH 7805] gi|88786955|gb|EAR18113.1| hypothetical protein WH7805_04956 [Synechococcus sp. WH 7805]
SynWH7803_1865 Blast Hits [nr] ref|ZP_01123098.1| N-acetylmannosamine-6-phosphate 2-epimerase [Synechococcus sp. WH 7805] gi|88788800|gb|EAR19955.1| N-acetylmannosamine-6-phosphate 2-epimerase [Synechococcus sp. WH 7805]
SynWH7803_1959 Blast Hits [nr] ref|ZP_01122955.1| hypothetical protein WH7805_12868 [Synechococcus sp. WH 7805] gi|88788657|gb|EAR19812.1| hypothetical protein WH7805_12868 [Synechococcus sp. WH 7805]
SynWH7803_2082 Blast Hits [nr] ref|ZP_01471014.1| photosystem q(b) protein [Synechococcus sp. RS9916] gi|116075685|ref|ZP_01472944.1| photosystem q(b) protein [Synechococcus sp. RS9916] gi|116075696|ref|ZP_01472955.1| photosystem q(b) protein [Synechococcus sp. RS9916] gi|116067000|gb|EAU72755.1| photosystem q(b) protein [Synechococcus sp. RS9916] gi|116067011|gb|EAU72766.1| photosystem q(b) protein [Synechococcus sp. RS9916] gi|116069057|gb|EAU74809.1| photosystem q(b) protein [Synechococcus sp. RS9916]
SynWH7803_2164 Blast Hits [nr] ref|ZP_01122702.1| phosphoglucomutase [Synechococcus sp. WH 7805] gi|88788404|gb|EAR19559.1| phosphoglucomutase [Synechococcus sp. WH 7805]
SynWH7803_2165 Blast Hits [nr] ref|ZP_01122701.1| hypothetical protein WH7805_11598 [Synechococcus sp. WH 7805] gi|88788403|gb|EAR19558.1| hypothetical protein WH7805_11598 [Synechococcus sp. WH 7805]
SynWH7803_2166 Blast Hits [nr] ref|ZP_01122700.1| putative RND family multidrug efflux transporter [Synechococcus sp. WH 7805] gi|88788402|gb|EAR19557.1| putative RND family multidrug efflux transporter [Synechococcus sp. WH 7805]
SynWH7803_2167 Blast Hits [nr] ref|ZP_01122699.1| hypothetical protein WH7805_11588 [Synechococcus sp. WH 7805] gi|88788401|gb|EAR19556.1| hypothetical protein WH7805_11588 [Synechococcus sp. WH 7805]
SynWH7803_2168 Blast Hits [nr] ref|ZP_01122698.1| putative ATPase, AAA family protein [Synechococcus sp. WH 7805] gi|88788400|gb|EAR19555.1| putative ATPase, AAA family protein [Synechococcus sp. WH 7805]
SynWH7803_2169 Blast Hits [nr] ref|ZP_01122697.1| possible protein phosphatase 2C [Synechococcus sp. WH 7805] gi|88788399|gb|EAR19554.1| possible protein phosphatase 2C [Synechococcus sp. WH 7805]
SynWH7803_2170 Blast Hits [nr] ref|ZP_01122696.1| possible Thymidylate synthase [Synechococcus sp. WH 7805] gi|88788398|gb|EAR19553.1| possible Thymidylate synthase [Synechococcus sp. WH 7805]
SynWH7803_2171 Blast Hits [nr] ref|ZP_01122695.1| putative 4'-phosphopantetheinyl transferase [Synechococcus sp. WH 7805] gi|88788397|gb|EAR19552.1| putative 4'-phosphopantetheinyl transferase [Synechococcus sp. WH 7805]
SynWH7803_2172 Blast Hits [nr] ref|ZP_01122694.1| putative bacterioferritin comigratory (BCP) protein [Synechococcus sp. WH 7805] gi|88788396|gb|EAR19551.1| putative bacterioferritin comigratory (BCP) protein [Synechococcus sp. WH 7805]
SynWH7803_2173 Blast Hits [nr] ref|ZP_01122693.1| hypothetical protein WH7805_11558 [Synechococcus sp. WH 7805] gi|88788395|gb|EAR19550.1| hypothetical protein WH7805_11558 [Synechococcus sp. WH 7805]
SynWH7803_2396 Blast Hits [nr] ref|YP_003495526.1| mechanosensitive ion channel [Deferribacter desulfuricans SSM1] gi|290753393|dbj|BAI79770.1| mechanosensitive ion channel [Deferribacter desulfuricans SSM1]
SynWH7803_2458 Blast Hits [nr] ref|NP_898515.1| aspartyl-tRNA synthetase [Synechococcus sp. WH 8102] gi|46577185|sp|Q7U3K6.1|SYD_SYNPX RecName: Full=Aspartyl-tRNA synthetase; AltName: Full=Aspartate--tRNA ligase; Short=AspRS gi|33639557|emb|CAE08941.1| Aspartyl-tRNA synthetase:GAD domain:tRNA synthetases, class I. [Synechococcus sp. WH 8102]
SynWH7803_2508 Blast Hits [nr] ref|ZP_01124896.1| hypothetical protein WH7805_09559 [Synechococcus sp. WH 7805] gi|88786607|gb|EAR17766.1| hypothetical protein WH7805_09559 [Synechococcus sp. WH 7805]
SynWH7803_0215 Blast Hits [sprot] ANK3_HUMAN (sp|Q12955) Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3
SynWH7803_1064 Blast Hits [sprot] Y955_SYNY3 (sp|P74328) Uncharacterized tRNA/rRNA methyltransferase slr0955 OS=Synechocystis sp. (strain PCC 6803) GN=slr0955 PE=3 SV=1
SynWH7803_0662 Blast Hits [pln_est] gb|CX279555|CX279555 21ACACMS_UP_009_E12_08MAR2004_088 Brassica napus 21ACACMS Brassica napus cDNA 5', mRNA sequence.
SynWH7803_1294 Blast Hits [pln_est] dbj|DC955389|DC955389 DC955389 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs38l12 3', mRNA sequence.
SynWH7803_1340 Blast Hits [pln_est] gb|CF569559|CF569559 YCS08_034 Immature Sugarcane Stem Lambda ZIPLOX Library (YCS) Saccharum hybrid cultivar Q117 cDNA clone YCS08_034 5' similar to signal peptidase, mRNA sequence.
SynWH7803_1441 Blast Hits [pln_est] dbj|DC955465|DC955465 DC955465 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs38o21 3', mRNA sequence.
SynWH7803_1555 Blast Hits [pln_est] dbj|EG495515|EG495515 AYAYK04TFB pooled cDNA populations Arabidopsis thaliana cDNA, mRNA sequence.
SynWH7803_1761 Blast Hits [pln_est] dbj|EE179555|EE179555 ZM_BFc0161H03.f ZM_BFc Zea mays cDNA clone ZM_BFc0161H03 3', mRNA sequence.
SynWH7803_2058 Blast Hits [pln_est] gb|CK279551|CK279551 EST725629 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAEC86 5' end, mRNA sequence.
SynWH7803_2416 Blast Hits [pln_est] gb|CJ955766|CJ955766 CJ955766 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul8m16 5', mRNA sequence.
SynWH7803_2427 Blast Hits [pln_est] dbj|DT761703|DT761703 EST1195552 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1YM11, mRNA sequence.
SynWH7803_0033 Blast Hits [TAIR_pep] AT5G15530.1 | Symbols: BCCP2, CAC1-B | BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2); biotin binding | chr5:5038955-5040437 FORWARD
SynWH7803_0109 Blast Hits [TAIR_pep] AT5G45210.1 | Symbols: | disease resistance protein (TIR-NBS-LRR class), putative | chr5:18295521-18298434 FORWARD
SynWH7803_0129 Blast Hits [TAIR_pep] AT5G20000.1 | Symbols: | 26S proteasome AAA-ATPase subunit, putative | chr5:6756915-6759550 FORWARD
SynWH7803_0471 Blast Hits [TAIR_pep] AT3G28850.1 | Symbols: | glutaredoxin family protein | chr3:10848669-10849955 FORWARD
SynWH7803_0581 Blast Hits [TAIR_pep] AT1G17540.1 | Symbols: | kinase | chr1:6029551-6032641 REVERSE
SynWH7803_0886 Blast Hits [TAIR_pep] AT2G38440.1 | Symbols: ITB1, SCAR2, DIS3, WAVE4, ATSCAR2 | SCAR2 (SCAR HOMOLOG 2) | chr2:16095550-16100851 FORWARD
SynWH7803_0942 Blast Hits [TAIR_pep] AT2G24690.1 | Symbols: | DNA binding / transcription factor | chr2:10499551-10503110 REVERSE
SynWH7803_0949 Blast Hits [TAIR_pep] AT5G06830.1 | Symbols: | unknown protein | chr5:2116882-2119559 REVERSE
SynWH7803_1370 Blast Hits [TAIR_pep] AT5G58250.1 | Symbols: | unknown protein | chr5:23559558-23560372 FORWARD
SynWH7803_1395 Blast Hits [TAIR_pep] AT2G31955.2 | Symbols: CNX2 | CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2); catalytic | chr2:13584635-13586484 REVERSE
SynWH7803_1400 Blast Hits [TAIR_pep] AT2G22610.1 | Symbols: | kinesin motor protein-related | chr2:9599550-9604626 FORWARD
SynWH7803_1553 Blast Hits [TAIR_pep] AT2G35390.1 | Symbols: | ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI) | chr2:14895528-14897098 REVERSE
SynWH7803_1728 Blast Hits [TAIR_pep] AT4G15470.1 | Symbols: | EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: glutamate binding (TAIR:AT1G03070.1); Has 4000 Blast hits to 3999 proteins in 955 species: Archae - 0; Bacteria - 1775; Metazoa - 750; Fungi - 92; Plants - 143; Viruses - 77; Other Eukaryotes - 1163 (source: NCBI BLink). | chr4:8843661-8845505 FORWARD
SynWH7803_1743 Blast Hits [TAIR_pep] AT5G48220.1 | Symbols: | indole-3-glycerol phosphate synthase, putative | chr5:19549930-19552046 FORWARD
SynWH7803_1852 Blast Hits [TAIR_pep] AT3G52760.1 | Symbols: | integral membrane Yip1 family protein | chr3:19553932-19554705 REVERSE
SynWH7803_1888 Blast Hits [TAIR_pep] AT2G25710.2 | Symbols: HCS1 | HCS1 (HOLOCARBOXYLASE SYNTHASE); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic | chr2:10952719-10955061 FORWARD
SynWH7803_2054 Blast Hits [TAIR_pep] AT3G50010.1 | Symbols: | DC1 domain-containing protein | chr3:18537248-18539557 REVERSE
SynWH7803_2146 Blast Hits [TAIR_pep] AT3G11560.4 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06220.1); Has 320 Blast hits to 313 proteins in 106 species: Archae - 0; Bacteria - 8; Metazoa - 121; Fungi - 108; Plants - 51; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). | chr3:3639553-3645506 FORWARD
SynWH7803_2264 Blast Hits [TAIR_pep] AT1G15380.2 | Symbols: | lactoylglutathione lyase family protein / glyoxalase I family protein | chr1:5290955-5292287 FORWARD
SynWH7803_2284 Blast Hits [TAIR_pep] AT2G23380.1 | Symbols: CLF, ICU1, SDG1, SET1 | CLF (CURLY LEAF); transcription factor | chr2:9955570-9960117 FORWARD
SynWH7803_2286 Blast Hits [TAIR_pep] AT3G25750.1 | Symbols: | F-box family protein | chr3:9400955-9402088 FORWARD
SynWH7803_2357 Blast Hits [TAIR_pep] AT1G79550.2 | Symbols: PGK | PGK (PHOSPHOGLYCERATE KINASE); phosphoglycerate kinase | chr1:29924347-29926295 REVERSE
SynWH7803_2374 Blast Hits [TAIR_pep] AT1G32990.1 | Symbols: PRPL11 | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome | chr1:11955827-11957139 FORWARD
SynWH7803_2478 Blast Hits [TAIR_pep] AT2G31955.2 | Symbols: CNX2 | CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2); catalytic | chr2:13584635-13586484 REVERSE
SynWH7803_2524 Blast Hits [TAIR_pep] AT5G01490.1 | Symbols: CAX4, ATCAX4 | CAX4 (CATION EXCHANGER 4); calcium:cation antiporter/ calcium:hydrogen antiporter/ cation:cation antiporter | chr5:195589-198465 FORWARD

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Gene set by search TXT
ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
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