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Full-text search result: 84 genes by "703" TXT SET

Synechococcus sp. WH 7803 (84 genes ) TXT SET

SynWH7803_0280 InterPro IPR017703 Folate-binding, YgfZ; HMMTigr:TIGR03317 ygfZ_signature
SynWH7803_0682 InterPro IPR014076 Carboxysome peptide A; HMMTigr:TIGR02703 carboxysome_A
SynWH7803_0703 Gene product hypothetical protein
Function Function unknown: Function unknown
InterPro IPR014956 Putative ParB-like nuclease; HMMPfam:PF08857 ParBc_2
InterPro IPR016932 Uncharacterised conserved protein UCP029669; HMMPIR:PIRSF029669 UCP029669
Blast Hits [TAIR_pep] AT1G15520.1 | Symbols: PDR12, ATPDR12 | PDR12 (PLEIOTROPIC DRUG RESISTANCE 12); ATPase, coupled to transmembrane movement of substances | chr1:5331993-5338175 REVERSE
Blast Hits [nr] ref|ZP_01123264.1| hypothetical protein WH7805_14413 [Synechococcus sp. WH 7805] gi|88788966|gb|EAR20121.1| hypothetical protein WH7805_14413 [Synechococcus sp. WH 7805]
Blast Hits [pln_est] dbj|EG721438|EG721438 GTE00013395 Guillardia theta non-normalised Guillardia theta cDNA, mRNA sequence.
Blast Hits [sprot] CALM_ACHKL (sp|P15094) Calmodulin OS=Achlya klebsiana GN=CMD1 PE=3 SV=3
SynWH7803_1742 InterPro IPR001189 Manganese/iron superoxide dismutase; FPrintScan:PR01703 MNSODISMTASE
SynWH7803_2088 InterPro IPR007036 Succinylglutamate desuccinylase/aspartoacylase; HMMPfam:PF04952 AstE_AspA
SynWH7803_1703 Gene product hypothetical protein
Function Not in COGs: Not in COGs
Blast Hits [TAIR_pep] AT5G48470.1 | Symbols: | unknown protein | chr5:19641810-19644127 FORWARD
Blast Hits [nr] ref|ZP_01124597.1| possible Neuromedin U [Synechococcus sp. WH 7805] gi|88787030|gb|EAR18188.1| possible Neuromedin U [Synechococcus sp. WH 7805]
Blast Hits [sprot] PPARG_BOVIN (sp|O18971) Peroxisome proliferator-activated receptor gamma OS=Bos taurus GN=PPARG PE=2 SV=1
SynWH7803_0141 GO term Biological Process: protein import (GO:0017038)
SynWH7803_1187 GO term Biological Process: chromate transport (GO:0015703)
SynWH7803_1692 GO term Molecular Function: 5-amino-6-(5-phosphoribosylamino)uracil reductase activity (GO:0008703)
SynWH7803_2211 GO term Molecular Function: 5-amino-6-(5-phosphoribosylamino)uracil reductase activity (GO:0008703)
SynWH7803_0039 Blast Hits [nr] ref|ZP_01124833.1| possible helicase [Synechococcus sp. WH 7805] gi|88786544|gb|EAR17703.1| possible helicase [Synechococcus sp. WH 7805]
SynWH7803_0535 Blast Hits [nr] ref|YP_128116.1| arsenite efflux membrane component-like protein [Legionella pneumophila str. Lens] gi|53755533|emb|CAH17032.1| arsenite efflux membrane component-like protein [Legionella pneumophila str. Lens]
Blast Hits [sprot] Y2703_MYCBO (sp|P0A607) Uncharacterized transporter Mb2703 OS=Mycobacterium bovis GN=Mb2703 PE=3 SV=1
SynWH7803_0768 Blast Hits [nr] ref|ZP_01472703.1| hypothetical protein RS9916_27824 [Synechococcus sp. RS9916] gi|116067640|gb|EAU73394.1| hypothetical protein RS9916_27824 [Synechococcus sp. RS9916]
SynWH7803_1086 Blast Hits [nr] ref|ZP_01079249.1| hypothetical protein RS9917_06045 [Synechococcus sp. RS9917] gi|86169118|gb|EAQ70374.1| hypothetical protein RS9917_06045 [Synechococcus sp. RS9917]
SynWH7803_1111 Blast Hits [nr] ref|ZP_01124225.1| RecJ exonuclease [Synechococcus sp. WH 7805] gi|88787703|gb|EAR18860.1| RecJ exonuclease [Synechococcus sp. WH 7805]
SynWH7803_1259 Blast Hits [nr] ref|ZP_01124068.1| glucose-6-phosphate isomerase [Synechococcus sp. WH 7805] gi|88787546|gb|EAR18703.1| glucose-6-phosphate isomerase [Synechococcus sp. WH 7805]
SynWH7803_1588 Blast Hits [nr] ref|ZP_01470358.1| Lycopene cyclase, beta and epsilon [Synechococcus sp. RS9916] gi|116068401|gb|EAU74153.1| Lycopene cyclase, beta and epsilon [Synechococcus sp. RS9916]
SynWH7803_1591 Blast Hits [nr] ref|ZP_01470361.1| inositol-5-monophosphate dehydrogenase [Synechococcus sp. RS9916] gi|116068404|gb|EAU74156.1| inositol-5-monophosphate dehydrogenase [Synechococcus sp. RS9916]
SynWH7803_1592 Blast Hits [nr] ref|ZP_01470362.1| Thioredoxin [Synechococcus sp. RS9916] gi|116068405|gb|EAU74157.1| Thioredoxin [Synechococcus sp. RS9916]
SynWH7803_1669 Blast Hits [TAIR_pep] AT1G37140.2 | Symbols: MCT1 | MCT1 (mei2 C-Terminal RRM only like 1); RNA binding | chr1:14170351-14172040 REVERSE
Blast Hits [nr] ref|YP_381352.1| hypothetical protein Syncc9605_1039 [Synechococcus sp. CC9605] gi|78197032|gb|ABB34797.1| conserved hypothetical protein [Synechococcus sp. CC9605]
SynWH7803_1704 Blast Hits [nr] ref|ZP_01124605.1| hypothetical protein WH7805_05371 [Synechococcus sp. WH 7805] gi|88787038|gb|EAR18196.1| hypothetical protein WH7805_05371 [Synechococcus sp. WH 7805]
SynWH7803_2028 Blast Hits [nr] ref|NP_896578.1| linker polypeptide, allophycocyanin-associated [Synechococcus sp. WH 8102] gi|116073700|ref|ZP_01470962.1| linker polypeptide, allophycocyanin-associated protein [Synechococcus sp. RS9916] gi|33638703|emb|CAE06998.1| linker polypeptide, allophycocyanin-associated [Synechococcus sp. WH 8102] gi|116069005|gb|EAU74757.1| linker polypeptide, allophycocyanin-associated protein [Synechococcus sp. RS9916]
SynWH7803_2060 Blast Hits [nr] ref|ZP_01122846.1| DNA-directed RNA polymerase beta' subunit [Synechococcus sp. WH 7805] gi|88788548|gb|EAR19703.1| DNA-directed RNA polymerase beta' subunit [Synechococcus sp. WH 7805]
SynWH7803_2163 Blast Hits [nr] ref|ZP_01122703.1| hypothetical protein WH7805_11608 [Synechococcus sp. WH 7805] gi|88788405|gb|EAR19560.1| hypothetical protein WH7805_11608 [Synechococcus sp. WH 7805]
SynWH7803_2493 Blast Hits [nr] ref|ZP_01079242.1| formate and nitrite transporters [Synechococcus sp. RS9917] gi|86169111|gb|EAQ70367.1| formate and nitrite transporters [Synechococcus sp. RS9917]
SynWH7803_2524 Blast Hits [nr] ref|ZP_01079210.1| hypothetical protein RS9917_05850 [Synechococcus sp. RS9917] gi|86169079|gb|EAQ70335.1| hypothetical protein RS9917_05850 [Synechococcus sp. RS9917]
SynWH7803_0986 Blast Hits [sprot] YCGQ_BACSU (sp|P94394) UPF0703 protein ycgQ OS=Bacillus subtilis GN=ycgQ PE=3 SV=1
SynWH7803_1499 Blast Hits [sprot] RNPA_BIFAA (sp|A1A3X8) Ribonuclease P protein component OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rnpA PE=3 SV=1
SynWH7803_1727 Blast Hits [sprot] YJCE_ECOLI (sp|P32703) Uncharacterized Na(+)/H(+) exchanger yjcE OS=Escherichia coli (strain K12) GN=yjcE PE=3 SV=1
SynWH7803_1991 Blast Hits [sprot] DNAK_DICNV (sp|A5EYG3) Chaperone protein dnaK OS=Dichelobacter nodosus (strain VCS1703A) GN=dnaK PE=2 SV=1
SynWH7803_2401 Blast Hits [sprot] TP53B_MOUSE (sp|P70399) Tumor suppressor p53-binding protein 1 OS=Mus musculus GN=Tp53bp1 PE=1 SV=2
SynWH7803_2455 Blast Hits [sprot] HCN2_MOUSE (sp|O88703) Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 OS=Mus musculus GN=Hcn2 PE=1 SV=1
SynWH7803_0083 Blast Hits [pln_est] dbj|EY723100|EY723100 CS00-C3-703-053-A02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
SynWH7803_0181 Blast Hits [pln_est] dbj|EY721969|EY721969 CS00-C3-703-030-C06-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
SynWH7803_0225 Blast Hits [pln_est] dbj|EY722249|EY722249 CS00-C3-703-034-H02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
SynWH7803_0226 Blast Hits [pln_est] dbj|EY722249|EY722249 CS00-C3-703-034-H02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
SynWH7803_0244 Blast Hits [pln_est] gb|FG227032|FG227032 Cucurbita_Aug04_001171 Cucurbita maxima (winter squash) phloem Cucurbita maxima cDNA, mRNA sequence.
SynWH7803_0429 Blast Hits [pln_est] dbj|EC731703|EC731703 MVE00004673 Mesostigma viride Regular library 2 Mesostigma viride cDNA similar to 50S ribosomal protein L2, Mesostigma chloroplast genome, mRNA sequence.
SynWH7803_0516 Blast Hits [pln_est] gb|BG349871|BG349871 947036D01.x1 947 - 2 week shoot from Barkan lab Zea mays cDNA, mRNA sequence.
SynWH7803_0612 Blast Hits [pln_est] dbj|EY720557|EY720557 CS00-C3-703-011-A12-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
SynWH7803_0764 Blast Hits [pln_est] gb|BU103703|BU103703 SCJFLR1073H12.g Saccharum officinarum mRNA (Nogueira,F.T.S) Saccharum hybrid cultivar SP80-3280 cDNA, mRNA sequence.
SynWH7803_0876 Blast Hits [pln_est] emb|AJ703643|AJ703643 AJ703643 ZAAE floral spathe MPIZ-ADIS-062 cDNA Zantedeschia aethiopica cDNA clone B-11-9, mRNA sequence.
SynWH7803_0893 Blast Hits [pln_est] gb|BG857030|BG857030 1024049E03.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, mRNA sequence.
SynWH7803_1297 Blast Hits [pln_est] gb|FG227037|FG227037 Cucurbita_Aug04_001311 Cucurbita maxima (winter squash) phloem Cucurbita maxima cDNA, mRNA sequence.
SynWH7803_1393 Blast Hits [pln_est] gb|FF392703|FF392703 MOOCW62TF MOO Vigna unguiculata cDNA 5', mRNA sequence.
SynWH7803_1445 Blast Hits [pln_est] gb|CA703132|CA703132 wdk1c.pk008.k21 wdk1c Triticum aestivum cDNA clone wdk1c.pk008.k21 5' end, mRNA sequence.
SynWH7803_1461 Blast Hits [pln_est] dbj|EY725896|EY725896 CS00-C3-703-041-F10-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
SynWH7803_1550 Blast Hits [pln_est] gb|CK270348|CK270348 EST716426 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POACS62 5' end, mRNA sequence.
SynWH7803_1744 Blast Hits [pln_est] dbj|ES790111|ES790111 070306ABLC001804CT (ABLC) Braeburn cell culture three days after subculture Malus x domestica cDNA clone ABLCC00180, mRNA sequence.
SynWH7803_1746 Blast Hits [pln_est] dbj|DV971703|DV971703 GQ0048.B3_A18 GQ004: Non-lignified secondary xylem from mature trees Picea glauca cDNA clone GQ0048_A18 5', mRNA sequence.
SynWH7803_1942 Blast Hits [pln_est] dbj|EY723321|EY723321 CS00-C3-703-057-C06-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
SynWH7803_2067 Blast Hits [pln_est] gb|FL703357|FL703357 CCGA8289.b1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA8289 5', mRNA sequence.
SynWH7803_2151 Blast Hits [pln_est] emb|AJ703002|AJ703002 AJ703002 ZAAE floral spathe MPIZ-ADIS-062 cDNA Zantedeschia aethiopica cDNA clone I-19-6, mRNA sequence.
SynWH7803_2193 Blast Hits [pln_est] dbj|EY726850|EY726850 CS00-C3-703-093-B04-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
SynWH7803_2204 Blast Hits [pln_est] gb|FG612703|FG612703 stem_S089_B08.SEQ Opium poppy stem cDNA library Papaver somniferum cDNA, mRNA sequence.
SynWH7803_2340 Blast Hits [pln_est] gb|GO370371|GO370371 GQ04008.B7P1_G23 GQ040 - Shoot tip - Active growth (Normalized) Picea glauca cDNA clone GQ04008_G23 5', mRNA sequence.
SynWH7803_2427 Blast Hits [pln_est] dbj|DT761703|DT761703 EST1195552 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1YM11, mRNA sequence.
SynWH7803_0034 Blast Hits [TAIR_pep] AT4G19512.1 | Symbols: | unknown protein | chr4:10639488-10639703 REVERSE
SynWH7803_0611 Blast Hits [TAIR_pep] AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr1:2703461-2706696 FORWARD
SynWH7803_0664 Blast Hits [TAIR_pep] AT3G08580.2 | Symbols: AAC1 | AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding | chr3:2605706-2607030 REVERSE
SynWH7803_0889 Blast Hits [TAIR_pep] AT5G57030.1 | Symbols: LUT2 | LUT2 (LUTEIN DEFICIENT 2); lycopene epsilon cyclase | chr5:23077398-23079818 FORWARD
SynWH7803_0903 Blast Hits [TAIR_pep] AT2G45400.1 | Symbols: BEN1 | BEN1; binding / catalytic/ coenzyme binding / oxidoreductase, acting on CH-OH group of donors | chr2:18703960-18706235 REVERSE
SynWH7803_0910 Blast Hits [TAIR_pep] AT4G04970.1 | Symbols: ATGSL1, ATGSL01, GSL01, GSL1 | GSL1 (GLUCAN SYNTHASE-LIKE 1); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups | chr4:2537039-2542434 FORWARD
SynWH7803_0913 Blast Hits [TAIR_pep] AT2G27090.1 | Symbols: | unknown protein | chr2:11567691-11570345 REVERSE
SynWH7803_0995 Blast Hits [TAIR_pep] AT5G05590.2 | Symbols: PAI2 | PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2); phosphoribosylanthranilate isomerase | chr5:1667039-1668214 REVERSE
SynWH7803_1160 Blast Hits [TAIR_pep] AT1G71696.2 | Symbols: SOL1 | SOL1 (SUPPRESSOR OF LLP1 1); carboxypeptidase/ metallocarboxypeptidase/ zinc ion binding | chr1:26966996-26970364 FORWARD
SynWH7803_1195 Blast Hits [TAIR_pep] AT5G14580.1 | Symbols: | polyribonucleotide nucleotidyltransferase, putative | chr5:4697612-4703013 REVERSE
SynWH7803_1284 Blast Hits [TAIR_pep] AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr1:2703461-2706696 FORWARD
SynWH7803_1298 Blast Hits [TAIR_pep] AT5G48300.1 | Symbols: ADG1, APS1 | ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1); glucose-1-phosphate adenylyltransferase | chr5:19570326-19572557 FORWARD
SynWH7803_1349 Blast Hits [TAIR_pep] AT1G20330.1 | Symbols: SMT2, CVP1, FRL1 | SMT2 (STEROL METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase | chr1:7038968-7040053 REVERSE
SynWH7803_1590 Blast Hits [TAIR_pep] AT4G38100.1 | Symbols: | unknown protein | chr4:17887033-17888177 REVERSE
SynWH7803_1736 Blast Hits [TAIR_pep] AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr1:2703461-2706696 FORWARD
SynWH7803_1810 Blast Hits [TAIR_pep] AT3G50390.1 | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:18702137-18703546 FORWARD
SynWH7803_1811 Blast Hits [TAIR_pep] AT5G24740.1 | Symbols: | INVOLVED IN: protein localization; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT1G48090.2); Has 1782 Blast hits to 981 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 1018; Fungi - 290; Plants - 104; Viruses - 0; Other Eukaryotes - 370 (source: NCBI BLink). | chr5:8470073-8489703 REVERSE
SynWH7803_2080 Blast Hits [TAIR_pep] AT5G60880.2 | Symbols: | unknown protein | chr5:24488895-24489703 REVERSE
SynWH7803_2089 Blast Hits [TAIR_pep] AT5G44000.1 | Symbols: | glutathione S-transferase C-terminal domain-containing protein | chr5:17702231-17703934 REVERSE
SynWH7803_2201 Blast Hits [TAIR_pep] AT5G07630.1 | Symbols: | lipid transporter | chr5:2410703-2414523 FORWARD
SynWH7803_2214 Blast Hits [TAIR_pep] AT5G39210.1 | Symbols: CRR7 | CRR7 (CHLORORESPIRATORY REDUCTION 7) | chr5:15703231-15703999 FORWARD
SynWH7803_2255 Blast Hits [TAIR_pep] AT4G17030.1 | Symbols: ATEXLB1, EXPR, AT-EXPR, ATEXPR1, ATHEXP BETA 3.1 | ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) | chr4:9581817-9583181 REVERSE
SynWH7803_2370 Blast Hits [TAIR_pep] AT1G27850.1 | Symbols: | unknown protein | chr1:9699265-9703701 FORWARD
SynWH7803_2428 Blast Hits [TAIR_pep] AT5G22010.1 | Symbols: AtRFC1 | AtRFC1 (replication factor C 1); ATP binding / DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding | chr5:7280632-7287037 REVERSE
SynWH7803_2453 Blast Hits [TAIR_pep] AT1G70310.1 | Symbols: SPDS2 | SPDS2 (spermidine synthase 2); spermidine synthase | chr1:26485497-26487352 REVERSE
SynWH7803_2454 Blast Hits [TAIR_pep] AT4G08900.1 | Symbols: | arginase | chr4:5703499-5705180 FORWARD
SynWH7803_2459 Blast Hits [TAIR_pep] AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr1:2703461-2706696 FORWARD

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Gene set by search TXT
ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
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