cyanobase » Acaryochloris marina MBIC11017

Acaryochloris marina MBIC11017

Summary

? | +/- | Top
Data source name GCA_000018105.1
Full name Acaryochloris marina MBIC11017 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Acaryochloris.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
Chromosome 6,503,724 6,333
pREB1 374,161 382
pREB2 356,087 408
pREB3 273,121 362
pREB4 226,680 273
pREB5 177,162 222
pREB6 172,728 188
pREB7 155,110 173
pREB8 120,693 117
pREB9 2,133 4
Total 8,361,599 8,462
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset GCA_000018105.1

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000018105.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000018105.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000018105.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000018105.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000018105.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000018105.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000018105.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000018105.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer