cyanobase » Synechocystis sp. PCC 6803 » genes » slr0473

GeneView: slr0473

GFF3

GeneAnnotation

? | +/- | Top
ID slr0473
Type protein_coding_gene
Gene symbol
cph1, hik35
Gene symbolExtracted from literature
cph1, hik35, phy, chk35
Gene product

cyanobacterial phytochrome 1, two-component sensor histidine kinase

Gene productExtracted from literature
Cph1, SyCph1, Slr0473, Chk35, AphA, Hik35
Functional category
Gene Ontology
[IEA]
ipr2go
  • Biological Process: peptidyl-histidine phosphorylation (GO:0018106 External)
  • Biological Process: protein-chromophore linkage (GO:0018298 External)
  • Biological Process: regulation of transcription (GO:0045449 External)
  • Biological Process: regulation of transcription, DNA-dependent (GO:0006355 External)
  • Biological Process: sensory perception (GO:0007600 External)
  • Biological Process: signal transduction (GO:0007165 External)
  • Cellular Component: membrane (GO:0016020 External)
  • Molecular Function: ATP binding (GO:0005524 External)
  • Molecular Function: G-protein coupled photoreceptor activity (GO:0008020 External)
  • Molecular Function: protein histidine kinase activity (GO:0004673 External)
  • Molecular Function: receptor activity (GO:0004872 External)
  • Molecular Function: signal transducer activity (GO:0004871 External)
  • Molecular Function: two-component sensor activity (GO:0000155 External)

Genomic context

? | +/- | Top
Location Chr:2607812..2610058
Strand direct
Genomic context

Transcript

? | +/- | Top
Nucleotide sequence
FNA
Length2247 nt
Sequence retrieving

Peptide

? | +/- | Top
Translated sequence
FAA
Length748 AA.

Protein families, domains and functional sites

? | +/- | Top
Graphical view by InterProScan External
show/hide
PNG
Table view by InterProScan External
show/hide
TableView
GFF3

Mutants

? | +/- | Top
Gene:
Genes and Mutantsposted by Teruo Ogawa <h44975a at nucc.cc.nagoya-u.ac.jp> at 1998-04-15
GeneticBackgroundNot examined
DNAyes
Phenotypeno
AdditionalInformationTeruo Ogawa. Bioscience Center, Nagoya University. Chikusa, Nagoya 464-8601, Japan. Tel: 81-52-789-5215; Fax: 81-52-789-5214
Gene: phy
Genes and Mutantsposted by Masahiko Ikeuchi <mikeuchi at mail.ims.u-tokyo.ac.jp> at 1999-09-17
GeneNamephy
GeneticBackgroundGT
DNAno
DrugMarkerKm-F
AdditionalInformationReference to Hironori Fujita and Masahiko Ikeuchi. Department of Life Sciences (Biology). University of Tokyo. Komaba 3-8-1, Meguro, Tokyo 153-8902 Japan. Phone/Fax 81-5454-6641/81-5454-4337
Gene: phy
Genes and Mutantsposted by Masahiko Ikeuchi <mikeuchi at mail.ims.u-tokyo.ac.jp> at 1999-09-17
GeneNamephy
GeneticBackgroundPCC
DNAno
DrugMarkerCm-PpsbA2
AdditionalInformationReference to Xiao-Xing Geng and Masahiko Ikeuchi. Department of Life Sciences (Biology). University of Tokyo. Komaba 3-8-1, Meguro, Tokyo 153-8902 Japan. Phone/Fax 81-5454-6641/81-5454-4337
Gene: Hik35
Genes and Mutantsposted by Iwane Suzuki <iwane at nibb.ac.jp> at 2000-05-25
GeneNameHik35
GeneticBackgroundGT
DNAno
DrugMarkerSp-r
AdditionalInformationSp-r Ins. Site: HincII (2sites). Sp-r Ins. position: 2608525. Product Reference: I. Suzuki et al. and N. Murata
Mutant: Δphytochrome
Genes and Mutantsposted by Teruo Ogawa <ogawater at xd6.so-net.ne.jp> at 2003-05-08
MutantNameΔphytochrome
GeneticBackgroundGT
DNAno
DrugMarkerKm
AdditionalInformationOGAWA_COLLECTION_1-23
Mutant: SK35
Genes and Mutantsposted by Teruo Ogawa <ogawater at xd6.so-net.ne.jp> at 2003-05-08
MutantNameSK35
GeneticBackgroundGT
DNAno
DrugMarkerSpe
AdditionalInformationOGAWA_COLLECTION_2-41. from I. Suzuki
Mutant: Δhik35
Genes and Mutantsposted by Iwane Suzuki <iwanes6803 at biol.tsukuba.ac.jp> at 2007-11-01
MutantNameΔhik35
GeneNamehik35, cph1
ProductNamehistidine kinase35, Hik35
Functiona component of the two-component system involved in signal transduction of red/far-red light
GeneticBackgroundGT
DrugDirectionFw
DrugMarkerSp-r
AdditionalInformationHincII (2sites), 2608525
Medline15757650

Homology search results (Blast2)

? | +/- | Top
show/hide TableView GFF3

CyanoBase Ortholog table (blast reciprocal best hit pairs)

? | +/- | Top
show/hide TableView GFF3

References

? | +/- | Top

External links

? | +/- | Top

API

? | +/- | Top
Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
  • /cyanobase/GCA_000009725.1/orthologs/slr0473.gff3 -- GFF3.
  • InterProScan matches

    MicrobeBase