cyanobase » Chlorobium tepidum TLS » genes » CT1345

GeneView: CT1345

GFF3

GeneAnnotation

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ID CT1345
Type protein_coding_gene
Gene symbol
ddlA
Gene symbolExtracted from literature
Gene product

D-alanine-D-alanine ligase A

Gene productExtracted from literature
Functional category Biosynthesis of murein sacculus and peptidoglycan
Gene Ontology
[IEA]
ipr2go

Genomic context

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Location Chr:1263277..1264371 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1095 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length364 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Chlorobium:ct1345
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Homology search results (Blast2)

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show/hide TableView GFF3

CyanoBase Ortholog table (blast reciprocal best hit pairs)

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show/hide TableView GFF3

Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop ctep0:CT1345 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG CT1345 External -- Phylogenetic classification of ortholog.
  • MBGD cte:CT1345 External -- The automated construction of orthologous groups.
  • Gclust *CT1345* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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