cyanobase » Synechococcus sp. JA-2-3B'a(2-13) » genes » CYB_1842

GeneView: CYB_1842

GFF3

GeneAnnotation

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ID CYB_1842
Type protein_coding_gene
Gene symbol
ppc
Gene symbolExtracted from literature
Gene product

phosphoenolpyruvate carboxylase

Gene productExtracted from literature
Functional category Energy production and conversion
Gene Ontology
[IEA]
ipr2go
  • Biological Process: tricarboxylic acid cycle (GO:0006099 External)
  • Biological Process: tricarboxylic acid cycle (GO:0006099 External)
  • Molecular Function: catalytic activity (GO:0003824 External)
  • Molecular Function: catalytic activity (GO:0003824 External)
  • Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964 External)
  • Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964 External)

Genomic context

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Location Chr:1928768..1931704 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length2937 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length978 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Cyb:cyb_1842
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Homology search results (Blast2)

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show/hide TableView GFF3

CyanoBase Ortholog table (blast reciprocal best hit pairs)

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show/hide TableView GFF3

Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG CYB_1842 External -- Phylogenetic classification of ortholog.
  • MBGD cyb:CYB_1842 External -- The automated construction of orthologous groups.
  • Gclust *CYB_1842* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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