cyanobase » Synechococcus sp. JA-2-3B'a(2-13) » genes » CYB_1497

GeneView: CYB_1497

GFF3

GeneAnnotation

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ID CYB_1497
Type protein_coding_gene
Gene symbol
psbL
Gene symbolExtracted from literature
Gene product

photosystem II reaction center protein PsbL

Gene productExtracted from literature
Functional category Not in COGs
Gene Ontology
[IEA]
ipr2go

Genomic context

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Location Chr:1573092..1573217 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length126 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length41 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Cyb:cyb_1497
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 19 41 22

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG CYB_1497 External -- Phylogenetic classification of ortholog.
  • MBGD cyb:CYB_1497 External -- The automated construction of orthologous groups.
  • Gclust *CYB_1497* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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